RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 PLEKHM2Q8IWE5 1019 aa12.47□□□□□ -0.41
USP39-215ENST00000481409 KLHDC4Q8TBB5 520 aa12.47□□□□□ -0.41
USP39-215ENST00000481409 MASTLQ96GX5 879 aa12.47□□□□□ -0.41
USP39-215ENST00000481409 FPGT-TNNI3KV9GXZ4 949 aa12.47□□□□□ -0.41
USP39-215ENST00000481409 ANKRD31Q8N7Z5 1873 aa12.46□□□□□ -0.41
USP39-215ENST00000481409 APBB1O00213 710 aa12.46□□□□□ -0.41
USP39-215ENST00000481409 ZBTB22O15209 634 aa12.46□□□□□ -0.41
USP39-215ENST00000481409 SRGNP10124 158 aa12.46□□□□□ -0.41
USP39-215ENST00000481409 PDE4AP27815 886 aa12.46□□□□□ -0.41
USP39-215ENST00000481409 PDE1AP54750 535 aa12.46□□□□□ -0.41
USP39-215ENST00000481409 TFCP2Q12800 502 aa12.46□□□□□ -0.41
USP39-215ENST00000481409 LRRC24Q50LG9 513 aa12.46□□□□□ -0.41
USP39-215ENST00000481409 BMP2KLQ5H9B9 411 aa12.46□□□□□ -0.41
USP39-215ENST00000481409 MSL1Q68DK7 614 aa12.46□□□□□ -0.41
USP39-215ENST00000481409 STYK1Q6J9G0 422 aa12.46□□□□□ -0.41
USP39-215ENST00000481409 ZNF594Q96JF6 807 aaPredicted RBP12.46□□□□□ -0.41
USP39-215ENST00000481409 CCDC85AQ96PX6 553 aaPredicted RBP12.46□□□□□ -0.41
USP39-215ENST00000481409 SEC31BQ9NQW1 1179 aa12.46□□□□□ -0.41
USP39-215ENST00000481409 KIF13BQ9NQT8 1826 aa12.46□□□□□ -0.42
USP39-215ENST00000481409 C10orf71Q711Q0 1435 aa12.45□□□□□ -0.42
USP39-215ENST00000481409 H0YIN7 160 aa12.45□□□□□ -0.42
USP39-215ENST00000481409 SMARCA5O60264 1052 aaPredicted RBP12.45□□□□□ -0.42
USP39-215ENST00000481409 GLRX3O76003 335 aaKnown RBP12.45□□□□□ -0.42
USP39-215ENST00000481409 RGS3P49796 1198 aa12.45□□□□□ -0.42
USP39-215ENST00000481409 UBE4AQ14139 1066 aa12.45□□□□□ -0.42
USP39-215ENST00000481409 R3HDM1Q15032 1099 aaKnown RBP12.45□□□□□ -0.42
USP39-215ENST00000481409 PUM3Q15397 648 aaKnown RBP12.45□□□□□ -0.42
USP39-215ENST00000481409 GRIPAP1Q4V328 841 aa12.45□□□□□ -0.42
USP39-215ENST00000481409 C3orf67Q6ZVT6 689 aa12.45□□□□□ -0.42
USP39-215ENST00000481409 AACSQ86V21 672 aa12.45□□□□□ -0.42
USP39-215ENST00000481409 VGLL2Q8N8G2 317 aa12.45□□□□□ -0.42
USP39-215ENST00000481409 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.45□□□□□ -0.42
USP39-215ENST00000481409 LPIN2Q92539 896 aa12.45□□□□□ -0.42
USP39-215ENST00000481409 PUS3Q9BZE2 481 aaKnown RBP12.45□□□□□ -0.42
USP39-215ENST00000481409 IL1RAPL2Q9NP60 686 aa12.45□□□□□ -0.42
USP39-215ENST00000481409 ECHDC1Q9NTX5 307 aa12.45□□□□□ -0.42
USP39-215ENST00000481409 ZNF609O15014 1411 aa12.45□□□□□ -0.42
USP39-215ENST00000481409 IFIT1P09914 478 aaKnown RBP12.44□□□□□ -0.42
USP39-215ENST00000481409 TGFB2P61812 414 aa12.44□□□□□ -0.42
USP39-215ENST00000481409 CNKSR1Q969H4 720 aa12.44□□□□□ -0.42
USP39-215ENST00000481409 EAF2Q96CJ1 260 aaPredicted RBP12.44□□□□□ -0.42
USP39-215ENST00000481409 ZNF512BQ96KM6 892 aaPredicted RBP12.44□□□□□ -0.42
USP39-215ENST00000481409 TMX4Q9H1E5 349 aaPredicted RBP12.44□□□□□ -0.42
USP39-215ENST00000481409 ARAP2Q8WZ64 1704 aa12.43□□□□□ -0.42
USP39-215ENST00000481409 A0A1B0GUL7 405 aa12.43□□□□□ -0.42
USP39-215ENST00000481409 NPM3O75607 178 aaKnown RBP12.43□□□□□ -0.42
USP39-215ENST00000481409 SLC5A1P13866 664 aa12.43□□□□□ -0.42
USP39-215ENST00000481409 FGFR2P21802 821 aa12.43□□□□□ -0.42
USP39-215ENST00000481409 CHRNDQ07001 517 aa12.43□□□□□ -0.42
USP39-215ENST00000481409 ATP2B3Q16720 1220 aa12.43□□□□□ -0.42
USP39-215ENST00000481409 CCDC158Q5M9N0 1113 aa12.43□□□□□ -0.42
USP39-215ENST00000481409 TTC22Q5TAA0 569 aa12.43□□□□□ -0.42
USP39-215ENST00000481409 CC2D2BQ6DHV5 1058 aa12.43□□□□□ -0.42
USP39-215ENST00000481409 ILDR2Q71H61 639 aa12.43□□□□□ -0.42
USP39-215ENST00000481409 SP8Q8IXZ3 490 aa12.43□□□□□ -0.42
USP39-215ENST00000481409 CELF1Q92879 486 aaKnown RBP12.43□□□□□ -0.42
USP39-215ENST00000481409 MINPP1Q9UNW1 487 aa12.43□□□□□ -0.42
USP39-215ENST00000481409 LEMD3Q9Y2U8 911 aa12.43□□□□□ -0.42
USP39-215ENST00000481409 SPEF2Q9C093 1822 aa12.42□□□□□ -0.42
USP39-215ENST00000481409 ATP5JP18859 108 aa12.42□□□□□ -0.42
USP39-215ENST00000481409 C2CD5Q86YS7 1000 aa12.42□□□□□ -0.42
USP39-215ENST00000481409 C16orf71Q8IYS4 520 aaPredicted RBP12.42□□□□□ -0.42
USP39-215ENST00000481409 PODXL2Q9NZ53 605 aa12.42□□□□□ -0.42
USP39-215ENST00000481409 CD2APQ9Y5K6 639 aa12.42□□□□□ -0.42
USP39-215ENST00000481409 DLEC1Q9Y238 1755 aa12.42□□□□□ -0.42
USP39-215ENST00000481409 XDHP47989 1333 aa12.41□□□□□ -0.42
USP39-215ENST00000481409 A0A1B0GUL6 1792 aa12.41□□□□□ -0.42
USP39-215ENST00000481409 LRRC37AA6NMS7 1700 aa12.41□□□□□ -0.42
USP39-215ENST00000481409 IGSF3O75054 1194 aa12.41□□□□□ -0.42
USP39-215ENST00000481409 UQCRFS1P1P0C7P4 283 aa12.41□□□□□ -0.42
USP39-215ENST00000481409 C15orf52Q6ZUT6 534 aaKnown RBP12.41□□□□□ -0.42
USP39-215ENST00000481409 CCDC24Q8N4L8 307 aa12.41□□□□□ -0.42
USP39-215ENST00000481409 SGIP1Q9BQI5 828 aa12.41□□□□□ -0.42
USP39-215ENST00000481409 PDGFDQ9GZP0 370 aaPredicted RBP12.41□□□□□ -0.42
USP39-215ENST00000481409 DBNLQ9UJU6 430 aaKnown RBP12.41□□□□□ -0.42
USP39-215ENST00000481409 ATP6V0A2Q9Y487 856 aa12.41□□□□□ -0.42
USP39-215ENST00000481409 PPEF1O14829 653 aaPredicted RBP12.4□□□□□ -0.42
USP39-215ENST00000481409 ZBTB7AO95365 584 aa12.4□□□□□ -0.42
USP39-215ENST00000481409 ATP2B4P23634 1241 aa12.4□□□□□ -0.42
USP39-215ENST00000481409 GORABQ5T7V8 394 aa12.4□□□□□ -0.42
USP39-215ENST00000481409 PI4K2BQ8TCG2 481 aa12.4□□□□□ -0.42
USP39-215ENST00000481409 XAGE2Q96GT9 111 aa12.4□□□□□ -0.42
USP39-215ENST00000481409 NEUROD6Q96NK8 337 aa12.4□□□□□ -0.42
USP39-215ENST00000481409 CCDC8Q9H0W5 538 aaPredicted RBP12.4□□□□□ -0.42
USP39-215ENST00000481409 SPON1Q9HCB6 807 aa12.4□□□□□ -0.42
USP39-215ENST00000481409 COL11A2P13942 1736 aaPredicted RBP12.4□□□□□ -0.43
USP39-215ENST00000481409 SEMA3EO15041 775 aa12.39□□□□□ -0.43
USP39-215ENST00000481409 TIMM10P62072 90 aa12.39□□□□□ -0.43
USP39-215ENST00000481409 LRRFIP1Q32MZ4 808 aaKnown RBP12.39□□□□□ -0.43
USP39-215ENST00000481409 CAVIN4Q5BKX8 364 aa12.39□□□□□ -0.43
USP39-215ENST00000481409 SOGA3Q5TF21 947 aa12.39□□□□□ -0.43
USP39-215ENST00000481409 CASC1Q6TDU7 716 aa12.39□□□□□ -0.43
USP39-215ENST00000481409 CNTROBQ8N137 903 aa12.39□□□□□ -0.43
USP39-215ENST00000481409 EVI5LQ96CN4 794 aa12.39□□□□□ -0.43
USP39-215ENST00000481409 GNL3LQ9NVN8 582 aaKnown RBP12.39□□□□□ -0.43
USP39-215ENST00000481409 TAF1P21675 1872 aa12.38□□□□□ -0.43
USP39-215ENST00000481409 HIP1O00291 1037 aa12.38□□□□□ -0.43
USP39-215ENST00000481409 ARID4AP29374 1257 aaPredicted RBP12.38□□□□□ -0.43
USP39-215ENST00000481409 KCNJ4P48050 445 aa12.38□□□□□ -0.43
USP39-215ENST00000481409 TMED8Q6PL24 325 aaPredicted RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms