RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 IFIT1P09914 478 aaKnown RBP15.62■□□□□ 0.09
USP42-206ENST00000479544 MATR3P43243 847 aaKnown RBP eCLIP15.62■□□□□ 0.09
USP42-206ENST00000479544 GABPB1Q06547 395 aaPredicted RBP15.62■□□□□ 0.09
USP42-206ENST00000479544 KIDINS220Q9ULH0 1771 aa15.62■□□□□ 0.09
USP42-206ENST00000479544 C3P01024 1663 aa15.62■□□□□ 0.09
USP42-206ENST00000479544 SPATA31D1Q6ZQQ2 1576 aa15.62■□□□□ 0.09
USP42-206ENST00000479544 CHL1O00533 1208 aa15.62■□□□□ 0.09
USP42-206ENST00000479544 CAVIN2O95810 425 aa15.62■□□□□ 0.09
USP42-206ENST00000479544 GTF2E1P29083 439 aaPredicted RBP15.62■□□□□ 0.09
USP42-206ENST00000479544 ILDR2Q71H61 639 aa15.62■□□□□ 0.09
USP42-206ENST00000479544 CLTCQ00610 1675 aaKnown RBP15.62■□□□□ 0.09
USP42-206ENST00000479544 PTPDC1A2A3K4 754 aa15.62■□□□□ 0.09
USP42-206ENST00000479544 RAD21O60216 631 aa15.62■□□□□ 0.09
USP42-206ENST00000479544 KCNA6P17658 529 aa15.62■□□□□ 0.09
USP42-206ENST00000479544 CLSTN2Q9H4D0 955 aa15.62■□□□□ 0.09
USP42-206ENST00000479544 DBF4Q9UBU7 674 aaPredicted RBP15.62■□□□□ 0.09
USP42-206ENST00000479544 ERVK-7P63135 1459 aa15.62■□□□□ 0.09
USP42-206ENST00000479544 IMMTQ16891 758 aaKnown RBP15.61■□□□□ 0.09
USP42-206ENST00000479544 FAM107BQ9H098 131 aa15.61■□□□□ 0.09
USP42-206ENST00000479544 TPCN1Q9ULQ1 816 aa15.61■□□□□ 0.09
USP42-206ENST00000479544 TTC21BQ7Z4L5 1316 aa15.61■□□□□ 0.09
USP42-206ENST00000479544 CDC42BPAQ5VT25 1732 aa15.61■□□□□ 0.09
USP42-206ENST00000479544 STX17P56962 302 aa15.61■□□□□ 0.09
USP42-206ENST00000479544 ZC3H6P61129 1189 aaKnown RBP15.61■□□□□ 0.09
USP42-206ENST00000479544 ARHGEF5Q12774 1597 aa15.61■□□□□ 0.09
USP42-206ENST00000479544 KLF18A0A0U1RQI7 1052 aa15.61■□□□□ 0.09
USP42-206ENST00000479544 A0A087WZG4 1122 aa15.6■□□□□ 0.09
USP42-206ENST00000479544 KIAA0754O94854 1291 aa15.6■□□□□ 0.09
USP42-206ENST00000479544 TRIM22Q8IYM9 498 aa15.6■□□□□ 0.09
USP42-206ENST00000479544 SMARCC1Q92922 1105 aaPredicted RBP15.6■□□□□ 0.09
USP42-206ENST00000479544 DNAJC21Q5F1R6 531 aaKnown RBP15.6■□□□□ 0.09
USP42-206ENST00000479544 TXLNBQ8N3L3 684 aa15.6■□□□□ 0.09
USP42-206ENST00000479544 FTOQ9C0B1 505 aaKnown RBP eCLIP15.6■□□□□ 0.09
USP42-206ENST00000479544 GTF2A1P52655 376 aaPredicted RBP15.6■□□□□ 0.09
USP42-206ENST00000479544 DHX8Q14562 1220 aaKnown RBP15.6■□□□□ 0.09
USP42-206ENST00000479544 KIAA1328Q86T90 577 aa15.6■□□□□ 0.09
USP42-206ENST00000479544 MRVI1Q9Y6F6 885 aa15.6■□□□□ 0.09
USP42-206ENST00000479544 SLC27A2O14975 620 aa15.6■□□□□ 0.09
USP42-206ENST00000479544 CADPS2Q86UW7 1296 aa15.6■□□□□ 0.09
USP42-206ENST00000479544 SLC39A6Q13433 755 aa15.59■□□□□ 0.09
USP42-206ENST00000479544 FKBP15Q5T1M5 1219 aa15.59■□□□□ 0.09
USP42-206ENST00000479544 NUP88Q99567 741 aaPredicted RBP15.59■□□□□ 0.09
USP42-206ENST00000479544 AFMP43652 599 aa15.59■□□□□ 0.09
USP42-206ENST00000479544 NCBP1Q09161 790 aaKnown RBP15.59■□□□□ 0.09
USP42-206ENST00000479544 CUL4AQ13619 759 aa15.59■□□□□ 0.09
USP42-206ENST00000479544 CCDC181Q5TID7 509 aa15.59■□□□□ 0.09
USP42-206ENST00000479544 CNNM1Q9NRU3 951 aa15.59■□□□□ 0.09
USP42-206ENST00000479544 PIK3R4Q99570 1358 aa15.58■□□□□ 0.09
USP42-206ENST00000479544 SPTLC2O15270 562 aa15.58■□□□□ 0.09
USP42-206ENST00000479544 ENOX2Q16206 610 aaKnown RBP15.58■□□□□ 0.09
USP42-206ENST00000479544 EYA1Q99502 592 aa15.58■□□□□ 0.09
USP42-206ENST00000479544 XPO4Q9C0E2 1151 aaKnown RBP15.58■□□□□ 0.09
USP42-206ENST00000479544 USP44Q9H0E7 712 aa15.58■□□□□ 0.09
USP42-206ENST00000479544 MNAT1P51948 309 aa15.58■□□□□ 0.08
USP42-206ENST00000479544 UTP14CQ5TAP6 766 aaKnown RBP15.58■□□□□ 0.08
USP42-206ENST00000479544 TBC1D2BQ9UPU7 963 aa15.58■□□□□ 0.08
USP42-206ENST00000479544 RIMS2Q9UQ26 1411 aa15.58■□□□□ 0.08
USP42-206ENST00000479544 EIF5P55010 431 aaKnown RBP15.58■□□□□ 0.08
USP42-206ENST00000479544 GOLGA8FQ08AF8 430 aa15.58■□□□□ 0.08
USP42-206ENST00000479544 GOLGA8DPQ0D2H9 430 aa15.58■□□□□ 0.08
USP42-206ENST00000479544 SART3Q15020 963 aaKnown RBP15.58■□□□□ 0.08
USP42-206ENST00000479544 SPECC1Q5M775 1068 aa15.58■□□□□ 0.08
USP42-206ENST00000479544 CCDC102BQ68D86 513 aa15.58■□□□□ 0.08
USP42-206ENST00000479544 ZNHIT6Q9NWK9 470 aaKnown RBP15.58■□□□□ 0.08
USP42-206ENST00000479544 CCDC57Q2TAC2 916 aa15.57■□□□□ 0.08
USP42-206ENST00000479544 GDAP1L1Q96MZ0 367 aa15.57■□□□□ 0.08
USP42-206ENST00000479544 DACH1Q9UI36 760 aa15.57■□□□□ 0.08
USP42-206ENST00000479544 ZSCAN20P17040 1043 aaPredicted RBP15.57■□□□□ 0.08
USP42-206ENST00000479544 LRRC8AQ8IWT6 810 aa15.57■□□□□ 0.08
USP42-206ENST00000479544 CTNNA3Q9UI47 895 aa15.57■□□□□ 0.08
USP42-206ENST00000479544 SEC31AO94979 1220 aaKnown RBP15.57■□□□□ 0.08
USP42-206ENST00000479544 PPP2R3AQ06190 1150 aa15.57■□□□□ 0.08
USP42-206ENST00000479544 VPS37DQ86XT2 251 aa15.57■□□□□ 0.08
USP42-206ENST00000479544 RASSF4Q9H2L5 321 aa15.57■□□□□ 0.08
USP42-206ENST00000479544 YTHDC2Q9H6S0 1430 aaKnown RBP15.56■□□□□ 0.08
USP42-206ENST00000479544 XBP1P17861 261 aa15.56■□□□□ 0.08
USP42-206ENST00000479544 DRC1Q96MC2 740 aa15.56■□□□□ 0.08
USP42-206ENST00000479544 HYPKQ9NX55 129 aa15.56■□□□□ 0.08
USP42-206ENST00000479544 MAGEC2Q9UBF1 373 aaPredicted RBP15.56■□□□□ 0.08
USP42-206ENST00000479544 PRDM15P57071 1507 aaPredicted RBP15.56■□□□□ 0.08
USP42-206ENST00000479544 ST7Q9NRC1 585 aa15.56■□□□□ 0.08
USP42-206ENST00000479544 MROH2AA6NES4 1674 aa15.56■□□□□ 0.08
USP42-206ENST00000479544 LRRIQ1Q96JM4 1722 aa15.56■□□□□ 0.08
USP42-206ENST00000479544 ZNF213O14771 459 aa15.56■□□□□ 0.08
USP42-206ENST00000479544 OAS2P29728 719 aaKnown RBP15.56■□□□□ 0.08
USP42-206ENST00000479544 FAM160A1Q05DH4 1040 aa15.56■□□□□ 0.08
USP42-206ENST00000479544 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.56■□□□□ 0.08
USP42-206ENST00000479544 HMG20BQ9P0W2 317 aa15.56■□□□□ 0.08
USP42-206ENST00000479544 RPS6KB1P23443 525 aa15.55■□□□□ 0.08
USP42-206ENST00000479544 CCDC47Q96A33 483 aaKnown RBP15.55■□□□□ 0.08
USP42-206ENST00000479544 RNF187Q5TA31 235 aaPredicted RBP15.55■□□□□ 0.08
USP42-206ENST00000479544 CTR9Q6PD62 1173 aa15.55■□□□□ 0.08
USP42-206ENST00000479544 MICALL1Q8N3F8 863 aa15.55■□□□□ 0.08
USP42-206ENST00000479544 NUTM2BA6NNL0 878 aaPredicted RBP15.55■□□□□ 0.08
USP42-206ENST00000479544 NUTM2EB1AL46 878 aaPredicted RBP15.55■□□□□ 0.08
USP42-206ENST00000479544 HMGB1P09429 215 aaKnown RBP15.55■□□□□ 0.08
USP42-206ENST00000479544 ZNF569Q5MCW4 686 aa15.55■□□□□ 0.08
USP42-206ENST00000479544 FBXO38Q6PIJ6 1188 aa15.55■□□□□ 0.08
USP42-206ENST00000479544 NUTM2AQ8IVF1 878 aaPredicted RBP15.55■□□□□ 0.08
USP42-206ENST00000479544 USP28Q96RU2 1077 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms