RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 USP50Q70EL3 339 aaPredicted RBP18.06■□□□□ 0.48
UPF3A-204ENST00000475218 HIRAP54198 1017 aaPredicted RBP18.05■□□□□ 0.48
UPF3A-204ENST00000475218 ADARB2Q9NS39 739 aaKnown RBP18.05■□□□□ 0.48
UPF3A-204ENST00000475218 ZBTB12Q9Y330 459 aaPredicted RBP18.05■□□□□ 0.48
UPF3A-204ENST00000475218 F6X3S4 739 aa18.04■□□□□ 0.48
UPF3A-204ENST00000475218 DOK7Q18PE1 504 aa18.04■□□□□ 0.48
UPF3A-204ENST00000475218 LINS1Q8NG48 757 aa18.04■□□□□ 0.48
UPF3A-204ENST00000475218 MYH16Q9H6N6 1097 aa18.04■□□□□ 0.48
UPF3A-204ENST00000475218 MKRN1Q9UHC7 482 aaKnown RBP18.04■□□□□ 0.48
UPF3A-204ENST00000475218 CNTNAP1P78357 1384 aa18.04■□□□□ 0.48
UPF3A-204ENST00000475218 PSMD14O00487 310 aa18.04■□□□□ 0.48
UPF3A-204ENST00000475218 ECE2O60344 883 aa18.04■□□□□ 0.48
UPF3A-204ENST00000475218 TNIP1Q15025 636 aa18.04■□□□□ 0.48
UPF3A-204ENST00000475218 TRPM4Q8TD43 1214 aa18.04■□□□□ 0.48
UPF3A-204ENST00000475218 PLA2G12BQ9BX93 195 aa18.04■□□□□ 0.48
UPF3A-204ENST00000475218 TMEM88BA6NKF7 163 aa18.03■□□□□ 0.48
UPF3A-204ENST00000475218 UFL1O94874 794 aa18.03■□□□□ 0.48
UPF3A-204ENST00000475218 BEND3Q5T5X7 828 aa18.03■□□□□ 0.48
UPF3A-204ENST00000475218 ANKRD18AQ8IVF6 992 aa18.03■□□□□ 0.48
UPF3A-204ENST00000475218 TRAF5O00463 557 aa18.02■□□□□ 0.48
UPF3A-204ENST00000475218 PGAP2Q9UHJ9 254 aa18.02■□□□□ 0.48
UPF3A-204ENST00000475218 PSME4Q14997 1843 aa18.02■□□□□ 0.48
UPF3A-204ENST00000475218 ZNF646O15015 1829 aaPredicted RBP18.02■□□□□ 0.47
UPF3A-204ENST00000475218 EGFRP00533 1210 aa18.02■□□□□ 0.47
UPF3A-204ENST00000475218 CSF1RP07333 972 aa18.02■□□□□ 0.47
UPF3A-204ENST00000475218 EYA3Q99504 573 aa18.02■□□□□ 0.47
UPF3A-204ENST00000475218 ANKIB1Q9P2G1 1089 aa18.02■□□□□ 0.47
UPF3A-204ENST00000475218 GGA1Q9UJY5 639 aa18.02■□□□□ 0.47
UPF3A-204ENST00000475218 MINPP1Q9UNW1 487 aa18.02■□□□□ 0.47
UPF3A-204ENST00000475218 TRPM7Q96QT4 1865 aa18.01■□□□□ 0.47
UPF3A-204ENST00000475218 BSDC1Q9NW68 430 aaPredicted RBP18.01■□□□□ 0.47
UPF3A-204ENST00000475218 CNOT7Q9UIV1 285 aaKnown RBP18.01■□□□□ 0.47
UPF3A-204ENST00000475218 XDHP47989 1333 aa18.01■□□□□ 0.47
UPF3A-204ENST00000475218 FAM161AQ3B820 660 aa18■□□□□ 0.47
UPF3A-204ENST00000475218 CST9Q5W186 159 aa18■□□□□ 0.47
UPF3A-204ENST00000475218 MICALL2Q8IY33 904 aa18■□□□□ 0.47
UPF3A-204ENST00000475218 CDC5LQ99459 802 aaKnown RBP18■□□□□ 0.47
UPF3A-204ENST00000475218 BCL2L13Q9BXK5 485 aa18■□□□□ 0.47
UPF3A-204ENST00000475218 FOXO4P98177 505 aa17.99■□□□□ 0.47
UPF3A-204ENST00000475218 DPF2Q92785 391 aa17.99■□□□□ 0.47
UPF3A-204ENST00000475218 ZC3H12CQ9C0D7 883 aaKnown RBP17.99■□□□□ 0.47
UPF3A-204ENST00000475218 VIL1P09327 827 aaKnown RBP17.99■□□□□ 0.47
UPF3A-204ENST00000475218 VEGFBP49765 207 aa17.99■□□□□ 0.47
UPF3A-204ENST00000475218 A0A1B0GUL6 1792 aa17.98■□□□□ 0.47
UPF3A-204ENST00000475218 RASSF10A6NK89 507 aa17.98■□□□□ 0.47
UPF3A-204ENST00000475218 HSPA1AP0DMV8 641 aaKnown RBP17.98■□□□□ 0.47
UPF3A-204ENST00000475218 HSPA1BP0DMV9 641 aaKnown RBP17.98■□□□□ 0.47
UPF3A-204ENST00000475218 ITGA6P23229 1130 aa17.98■□□□□ 0.47
UPF3A-204ENST00000475218 EPHA10Q5JZY3 1008 aa17.98■□□□□ 0.47
UPF3A-204ENST00000475218 SAMD7Q7Z3H4 446 aa17.98■□□□□ 0.47
UPF3A-204ENST00000475218 ATP2B4P23634 1241 aa17.97■□□□□ 0.47
UPF3A-204ENST00000475218 GLIS2Q9BZE0 524 aaPredicted RBP17.97■□□□□ 0.47
UPF3A-204ENST00000475218 ZNF609O15014 1411 aa17.97■□□□□ 0.47
UPF3A-204ENST00000475218 DLK2Q6UY11 383 aa17.96■□□□□ 0.47
UPF3A-204ENST00000475218 TXNRD3Q86VQ6 643 aa17.96■□□□□ 0.47
UPF3A-204ENST00000475218 RPS12P25398 132 aaKnown RBP17.96■□□□□ 0.47
UPF3A-204ENST00000475218 KLRK1P26718 216 aa17.96■□□□□ 0.47
UPF3A-204ENST00000475218 SLFN5Q08AF3 891 aa17.96■□□□□ 0.47
UPF3A-204ENST00000475218 COL13A1Q5TAT6 717 aaPredicted RBP17.96■□□□□ 0.47
UPF3A-204ENST00000475218 IFFO2Q5TF58 517 aa17.96■□□□□ 0.47
UPF3A-204ENST00000475218 ZC3H15Q8WU90 426 aaKnown RBP17.96■□□□□ 0.47
UPF3A-204ENST00000475218 CDCA7LQ96GN5 454 aa17.96■□□□□ 0.47
UPF3A-204ENST00000475218 GMLQ99445 158 aa17.96■□□□□ 0.47
UPF3A-204ENST00000475218 MED23Q9ULK4 1368 aa17.96■□□□□ 0.47
UPF3A-204ENST00000475218 POLR2AP24928 1970 aaKnown RBP17.95■□□□□ 0.46
UPF3A-204ENST00000475218 CCT4P50991 539 aaKnown RBP17.95■□□□□ 0.46
UPF3A-204ENST00000475218 TBC1D10BQ4KMP7 808 aaPredicted RBP17.95■□□□□ 0.46
UPF3A-204ENST00000475218 MRPL50Q8N5N7 158 aaKnown RBP17.95■□□□□ 0.46
UPF3A-204ENST00000475218 H7C1D1 291 aa17.94■□□□□ 0.46
UPF3A-204ENST00000475218 THSD7BQ9C0I4 1608 aa17.94■□□□□ 0.46
UPF3A-204ENST00000475218 IRS2Q9Y4H2 1338 aa17.94■□□□□ 0.46
UPF3A-204ENST00000475218 E9PSI1 815 aa17.94■□□□□ 0.46
UPF3A-204ENST00000475218 GRM8O00222 908 aa17.94■□□□□ 0.46
UPF3A-204ENST00000475218 TRMT2AQ8IZ69 625 aaKnown RBP17.94■□□□□ 0.46
UPF3A-204ENST00000475218 KAZALD1Q96I82 304 aa17.94■□□□□ 0.46
UPF3A-204ENST00000475218 ASTN2O75129 1339 aaPredicted RBP17.93■□□□□ 0.46
UPF3A-204ENST00000475218 SNAP23O00161 211 aa17.93■□□□□ 0.46
UPF3A-204ENST00000475218 IGHMBP2P38935 993 aaKnown RBP17.93■□□□□ 0.46
UPF3A-204ENST00000475218 DEFB115Q30KQ5 88 aa17.93■□□□□ 0.46
UPF3A-204ENST00000475218 RSBN1LQ6PCB5 846 aaPredicted RBP17.93■□□□□ 0.46
UPF3A-204ENST00000475218 ZNF280AP59817 542 aaPredicted RBP17.92■□□□□ 0.46
UPF3A-204ENST00000475218 SSH1Q8WYL5 1049 aa17.92■□□□□ 0.46
UPF3A-204ENST00000475218 ABT1Q9ULW3 272 aaKnown RBP17.92■□□□□ 0.46
UPF3A-204ENST00000475218 ALDH1L1O75891 902 aa17.91■□□□□ 0.46
UPF3A-204ENST00000475218 CHRNDQ07001 517 aa17.91■□□□□ 0.46
UPF3A-204ENST00000475218 SLC4A10Q6U841 1118 aa17.91■□□□□ 0.46
UPF3A-204ENST00000475218 LMBR1LQ6UX01 489 aa17.91■□□□□ 0.46
UPF3A-204ENST00000475218 PODNQ7Z5L7 613 aa17.91■□□□□ 0.46
UPF3A-204ENST00000475218 TLL2Q9Y6L7 1015 aa17.91■□□□□ 0.46
UPF3A-204ENST00000475218 CCER2I3L3R5 266 aa17.91■□□□□ 0.46
UPF3A-204ENST00000475218 RBM26Q5T8P6 1007 aaKnown RBP17.91■□□□□ 0.46
UPF3A-204ENST00000475218 MXD3Q9BW11 206 aa17.91■□□□□ 0.46
UPF3A-204ENST00000475218 LEMD3Q9Y2U8 911 aa17.91■□□□□ 0.46
UPF3A-204ENST00000475218 ZNF804BA4D1E1 1349 aa17.9■□□□□ 0.46
UPF3A-204ENST00000475218 UTYO14607 1347 aa17.9■□□□□ 0.46
UPF3A-204ENST00000475218 WDR33Q9C0J8 1336 aaKnown RBP17.9■□□□□ 0.46
UPF3A-204ENST00000475218 ANKRD18BA2A2Z9 1011 aa17.9■□□□□ 0.46
UPF3A-204ENST00000475218 G3V3G9 751 aa17.9■□□□□ 0.46
UPF3A-204ENST00000475218 CELF2O95319 508 aaKnown RBP17.9■□□□□ 0.46
UPF3A-204ENST00000475218 NBPF7P0C2Y1 421 aaPredicted RBP17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms