RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 BCL2L13Q9BXK5 485 aa24.12■■□□□ 1.45
CCDC88B-206ENST00000473405 SALL2Q9Y467 1007 aaPredicted RBP24.12■■□□□ 1.45
CCDC88B-206ENST00000473405 PSMD14O00487 310 aa24.11■■□□□ 1.45
CCDC88B-206ENST00000473405 ECE2O60344 883 aa24.11■■□□□ 1.45
CCDC88B-206ENST00000473405 HIRAP54198 1017 aaPredicted RBP24.11■■□□□ 1.45
CCDC88B-206ENST00000473405 NEXNQ0ZGT2 675 aa24.11■■□□□ 1.45
CCDC88B-206ENST00000473405 FLIIQ13045 1269 aa24.11■■□□□ 1.45
CCDC88B-206ENST00000473405 PGAP2Q9UHJ9 254 aa24.11■■□□□ 1.45
CCDC88B-206ENST00000473405 ZBTB12Q9Y330 459 aaPredicted RBP24.11■■□□□ 1.45
CCDC88B-206ENST00000473405 ZNF646O15015 1829 aaPredicted RBP24.11■■□□□ 1.45
CCDC88B-206ENST00000473405 DOK7Q18PE1 504 aa24.1■■□□□ 1.45
CCDC88B-206ENST00000473405 CST9Q5W186 159 aa24.1■■□□□ 1.45
CCDC88B-206ENST00000473405 MICALL2Q8IY33 904 aa24.1■■□□□ 1.45
CCDC88B-206ENST00000473405 KCNQ5Q9NR82 932 aa24.1■■□□□ 1.45
CCDC88B-206ENST00000473405 CNOT7Q9UIV1 285 aaKnown RBP24.1■■□□□ 1.45
CCDC88B-206ENST00000473405 UFL1O94874 794 aa24.09■■□□□ 1.45
CCDC88B-206ENST00000473405 TTLL11Q8NHH1 800 aa24.09■■□□□ 1.45
CCDC88B-206ENST00000473405 SPINK5Q9NQ38 1064 aaPredicted RBP24.09■■□□□ 1.45
CCDC88B-206ENST00000473405 ANKIB1Q9P2G1 1089 aa24.09■■□□□ 1.45
CCDC88B-206ENST00000473405 ABT1Q9ULW3 272 aaKnown RBP24.09■■□□□ 1.45
CCDC88B-206ENST00000473405 VAMP4O75379 141 aa24.08■■□□□ 1.45
CCDC88B-206ENST00000473405 DEFB115Q30KQ5 88 aa24.08■■□□□ 1.45
CCDC88B-206ENST00000473405 DPF2Q92785 391 aa24.08■■□□□ 1.45
CCDC88B-206ENST00000473405 GGA1Q9UJY5 639 aa24.08■■□□□ 1.45
CCDC88B-206ENST00000473405 H7C1W4 665 aa24.07■■□□□ 1.44
CCDC88B-206ENST00000473405 EXOSC9Q06265 439 aaKnown RBP24.07■■□□□ 1.44
CCDC88B-206ENST00000473405 UBE3BQ7Z3V4 1068 aa24.07■■□□□ 1.44
CCDC88B-206ENST00000473405 ANKRD18AQ8IVF6 992 aa24.07■■□□□ 1.44
CCDC88B-206ENST00000473405 ZC3H15Q8WU90 426 aaKnown RBP24.07■■□□□ 1.44
CCDC88B-206ENST00000473405 GLIS2Q9BZE0 524 aaPredicted RBP24.07■■□□□ 1.44
CCDC88B-206ENST00000473405 GREM2Q9H772 168 aa24.07■■□□□ 1.44
CCDC88B-206ENST00000473405 POLR2AP24928 1970 aaKnown RBP24.07■■□□□ 1.44
CCDC88B-206ENST00000473405 XDHP47989 1333 aa24.07■■□□□ 1.44
CCDC88B-206ENST00000473405 GCKRQ14397 625 aa24.06■■□□□ 1.44
CCDC88B-206ENST00000473405 ZC3H12CQ9C0D7 883 aaKnown RBP24.06■■□□□ 1.44
CCDC88B-206ENST00000473405 A0A1B0GUL6 1792 aa24.06■■□□□ 1.44
CCDC88B-206ENST00000473405 ZNF609O15014 1411 aa24.05■■□□□ 1.44
CCDC88B-206ENST00000473405 H7C1D1 291 aa24.05■■□□□ 1.44
CCDC88B-206ENST00000473405 FOXN1O15353 648 aa24.05■■□□□ 1.44
CCDC88B-206ENST00000473405 EGFRP00533 1210 aa24.05■■□□□ 1.44
CCDC88B-206ENST00000473405 RPS12P25398 132 aaKnown RBP24.05■■□□□ 1.44
CCDC88B-206ENST00000473405 FKBP5Q13451 457 aaPredicted RBP24.05■■□□□ 1.44
CCDC88B-206ENST00000473405 CDC5LQ99459 802 aaKnown RBP24.05■■□□□ 1.44
CCDC88B-206ENST00000473405 WDR33Q9C0J8 1336 aaKnown RBP24.05■■□□□ 1.44
CCDC88B-206ENST00000473405 CASP7P55210 303 aa24.04■■□□□ 1.44
CCDC88B-206ENST00000473405 SAMD7Q7Z3H4 446 aa24.04■■□□□ 1.44
CCDC88B-206ENST00000473405 FAM9BQ8IZU0 186 aa24.04■■□□□ 1.44
CCDC88B-206ENST00000473405 DNAAF4Q8WXU2 420 aa24.04■■□□□ 1.44
CCDC88B-206ENST00000473405 WTIPA6NIX2 430 aaPredicted RBP24.03■■□□□ 1.44
CCDC88B-206ENST00000473405 BSDC1Q9NW68 430 aaPredicted RBP24.03■■□□□ 1.44
CCDC88B-206ENST00000473405 TLL2Q9Y6L7 1015 aa24.03■■□□□ 1.44
CCDC88B-206ENST00000473405 VIL1P09327 827 aaKnown RBP24.02■■□□□ 1.44
CCDC88B-206ENST00000473405 TBC1D10BQ4KMP7 808 aaPredicted RBP24.02■■□□□ 1.44
CCDC88B-206ENST00000473405 TNS4Q8IZW8 715 aa24.02■■□□□ 1.44
CCDC88B-206ENST00000473405 LINS1Q8NG48 757 aa24.02■■□□□ 1.44
CCDC88B-206ENST00000473405 PLA2G12BQ9BX93 195 aa24.02■■□□□ 1.44
CCDC88B-206ENST00000473405 WBP1LQ9NX94 342 aa24.02■■□□□ 1.44
CCDC88B-206ENST00000473405 CELF2O95319 508 aaKnown RBP24.01■■□□□ 1.43
CCDC88B-206ENST00000473405 MINPP1Q9UNW1 487 aa24.01■■□□□ 1.43
CCDC88B-206ENST00000473405 MED23Q9ULK4 1368 aa24.01■■□□□ 1.43
CCDC88B-206ENST00000473405 ATP2B4P23634 1241 aa24■■□□□ 1.43
CCDC88B-206ENST00000473405 CDC37L1Q7L3B6 337 aa24■■□□□ 1.43
CCDC88B-206ENST00000473405 CAPNS2Q96L46 248 aa24■■□□□ 1.43
CCDC88B-206ENST00000473405 MYH16Q9H6N6 1097 aa24■■□□□ 1.43
CCDC88B-206ENST00000473405 FAM161AQ3B820 660 aa23.99■■□□□ 1.43
CCDC88B-206ENST00000473405 CYP4F22Q6NT55 531 aa23.99■■□□□ 1.43
CCDC88B-206ENST00000473405 SAPCD2Q86UD0 394 aa23.99■■□□□ 1.43
CCDC88B-206ENST00000473405 ZNF521Q96K83 1311 aa23.99■■□□□ 1.43
CCDC88B-206ENST00000473405 G3V3G9 751 aa23.98■■□□□ 1.43
CCDC88B-206ENST00000473405 DCAF8Q5TAQ9 597 aa23.98■■□□□ 1.43
CCDC88B-206ENST00000473405 DLK2Q6UY11 383 aa23.98■■□□□ 1.43
CCDC88B-206ENST00000473405 AIDAQ96BJ3 306 aa23.98■■□□□ 1.43
CCDC88B-206ENST00000473405 F6X3S4 739 aa23.97■■□□□ 1.43
CCDC88B-206ENST00000473405 CSF1RP07333 972 aa23.97■■□□□ 1.43
CCDC88B-206ENST00000473405 ITGA6P23229 1130 aa23.97■■□□□ 1.43
CCDC88B-206ENST00000473405 RSBN1LQ6PCB5 846 aaPredicted RBP23.97■■□□□ 1.43
CCDC88B-206ENST00000473405 ECE1P42892 770 aa23.96■■□□□ 1.43
CCDC88B-206ENST00000473405 CCT4P50991 539 aaKnown RBP23.96■■□□□ 1.43
CCDC88B-206ENST00000473405 KIF4BQ2VIQ3 1234 aa23.96■■□□□ 1.43
CCDC88B-206ENST00000473405 BEND3Q5T5X7 828 aa23.96■■□□□ 1.43
CCDC88B-206ENST00000473405 PAXIP1Q6ZW49 1069 aaPredicted RBP23.96■■□□□ 1.43
CCDC88B-206ENST00000473405 USP48Q86UV5 1035 aa23.96■■□□□ 1.43
CCDC88B-206ENST00000473405 GMLQ99445 158 aa23.96■■□□□ 1.43
CCDC88B-206ENST00000473405 ZNF408Q9H9D4 720 aa23.96■■□□□ 1.43
CCDC88B-206ENST00000473405 IGHMBP2P38935 993 aaKnown RBP23.95■■□□□ 1.42
CCDC88B-206ENST00000473405 CTCFP49711 727 aaPredicted RBP23.95■■□□□ 1.42
CCDC88B-206ENST00000473405 ZNF280AP59817 542 aaPredicted RBP23.95■■□□□ 1.42
CCDC88B-206ENST00000473405 RBM26Q5T8P6 1007 aaKnown RBP23.95■■□□□ 1.42
CCDC88B-206ENST00000473405 PODNQ7Z5L7 613 aa23.95■■□□□ 1.42
CCDC88B-206ENST00000473405 HHIPL1Q96JK4 782 aa23.95■■□□□ 1.42
CCDC88B-206ENST00000473405 ASTN2O75129 1339 aaPredicted RBP23.94■■□□□ 1.42
CCDC88B-206ENST00000473405 MAP2K1Q02750 393 aaPredicted RBP23.94■■□□□ 1.42
CCDC88B-206ENST00000473405 GRM1Q13255 1194 aa23.94■■□□□ 1.42
CCDC88B-206ENST00000473405 KRT26Q7Z3Y9 468 aa23.94■■□□□ 1.42
CCDC88B-206ENST00000473405 AGBL3Q8NEM8 1001 aa23.94■■□□□ 1.42
CCDC88B-206ENST00000473405 PRDM10Q9NQV6 1147 aa23.94■■□□□ 1.42
CCDC88B-206ENST00000473405 USP17L3A6NCW0 530 aa23.93■■□□□ 1.42
CCDC88B-206ENST00000473405 USP17L4A6NCW7 530 aa23.93■■□□□ 1.42
CCDC88B-206ENST00000473405 ADM5C9JUS6 153 aa23.93■■□□□ 1.42
CCDC88B-206ENST00000473405 USP17L1Q7RTZ2 530 aa23.93■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 107.2 ms