RNA–Protein interactions for RNA: ENST00000472789.1

SMARCD3-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 863 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-208ENST00000472789 DPP8Q6V1X1 898 aaPredicted RBP13.18□□□□□ -0.3
SMARCD3-208ENST00000472789 MPNDQ8N594 471 aa13.18□□□□□ -0.3
SMARCD3-208ENST00000472789 MPHOSPH8Q99549 860 aa13.18□□□□□ -0.3
SMARCD3-208ENST00000472789 ZNF277Q9NRM2 450 aaPredicted RBP13.18□□□□□ -0.3
SMARCD3-208ENST00000472789 NSFL1CQ9UNZ2 370 aaKnown RBP13.18□□□□□ -0.3
SMARCD3-208ENST00000472789 LRRFIP2Q9Y608 721 aaKnown RBP13.18□□□□□ -0.3
SMARCD3-208ENST00000472789 WDR90Q96KV7 1748 aa13.18□□□□□ -0.3
SMARCD3-208ENST00000472789 LMNB1P20700 586 aa13.17□□□□□ -0.3
SMARCD3-208ENST00000472789 KAZALD1Q96I82 304 aa13.17□□□□□ -0.3
SMARCD3-208ENST00000472789 ANKIB1Q9P2G1 1089 aa13.17□□□□□ -0.3
SMARCD3-208ENST00000472789 RTL9Q8NET4 1388 aa13.17□□□□□ -0.3
SMARCD3-208ENST00000472789 GRIPAP1Q4V328 841 aa13.16□□□□□ -0.3
SMARCD3-208ENST00000472789 ANKRD44Q8N8A2 993 aa13.16□□□□□ -0.3
SMARCD3-208ENST00000472789 ZNF594Q96JF6 807 aaPredicted RBP13.16□□□□□ -0.3
SMARCD3-208ENST00000472789 COL4A1P02462 1669 aa13.15□□□□□ -0.3
SMARCD3-208ENST00000472789 C6orf229H3BNL8 230 aa13.15□□□□□ -0.3
SMARCD3-208ENST00000472789 GNAI2P04899 355 aa13.15□□□□□ -0.3
SMARCD3-208ENST00000472789 GPSM2P81274 684 aa13.15□□□□□ -0.3
SMARCD3-208ENST00000472789 COL13A1Q5TAT6 717 aaPredicted RBP13.15□□□□□ -0.3
SMARCD3-208ENST00000472789 SUPT20HQ8NEM7 779 aa13.15□□□□□ -0.3
SMARCD3-208ENST00000472789 RBM46Q8TBY0 533 aaKnown RBP13.15□□□□□ -0.3
SMARCD3-208ENST00000472789 CNNM1Q9NRU3 951 aa13.15□□□□□ -0.3
SMARCD3-208ENST00000472789 BSDC1Q9NW68 430 aaPredicted RBP13.15□□□□□ -0.3
SMARCD3-208ENST00000472789 LTBP3Q9NS15 1303 aa13.14□□□□□ -0.31
SMARCD3-208ENST00000472789 ZBTB7BO15156 539 aaPredicted RBP13.14□□□□□ -0.31
SMARCD3-208ENST00000472789 PPIP5K2O43314 1243 aa13.14□□□□□ -0.31
SMARCD3-208ENST00000472789 RABL6Q3YEC7 729 aaPredicted RBP13.14□□□□□ -0.31
SMARCD3-208ENST00000472789 LDHAL6AQ6ZMR3 332 aa13.14□□□□□ -0.31
SMARCD3-208ENST00000472789 LARGE2Q8N3Y3 721 aa13.14□□□□□ -0.31
SMARCD3-208ENST00000472789 KLRG1Q96E93 195 aa13.14□□□□□ -0.31
SMARCD3-208ENST00000472789 PSMD1Q99460 953 aa13.14□□□□□ -0.31
SMARCD3-208ENST00000472789 C1orf115Q9H7X2 142 aa13.14□□□□□ -0.31
SMARCD3-208ENST00000472789 UFL1O94874 794 aa13.13□□□□□ -0.31
SMARCD3-208ENST00000472789 IARSP41252 1262 aaKnown RBP13.13□□□□□ -0.31
SMARCD3-208ENST00000472789 KCNJ4P48050 445 aa13.13□□□□□ -0.31
SMARCD3-208ENST00000472789 PRELPP51888 382 aa13.13□□□□□ -0.31
SMARCD3-208ENST00000472789 AOC3Q16853 763 aa13.13□□□□□ -0.31
SMARCD3-208ENST00000472789 JMYQ8N9B5 988 aa13.13□□□□□ -0.31
SMARCD3-208ENST00000472789 JDP2Q8WYK2 163 aa13.13□□□□□ -0.31
SMARCD3-208ENST00000472789 RWDD1Q9H446 243 aaPredicted RBP13.13□□□□□ -0.31
SMARCD3-208ENST00000472789 ZBTB40Q9NUA8 1239 aa13.13□□□□□ -0.31
SMARCD3-208ENST00000472789 GGA1Q9UJY5 639 aa13.13□□□□□ -0.31
SMARCD3-208ENST00000472789 MINPP1Q9UNW1 487 aa13.13□□□□□ -0.31
SMARCD3-208ENST00000472789 XDHP47989 1333 aa13.13□□□□□ -0.31
SMARCD3-208ENST00000472789 FER1L6Q2WGJ9 1857 aa13.12□□□□□ -0.31
SMARCD3-208ENST00000472789 SPEF2Q9C093 1822 aa13.12□□□□□ -0.31
SMARCD3-208ENST00000472789 G3V3G9 751 aa13.12□□□□□ -0.31
SMARCD3-208ENST00000472789 RIMBP2O15034 1052 aa13.12□□□□□ -0.31
SMARCD3-208ENST00000472789 DCAF8Q5TAQ9 597 aa13.12□□□□□ -0.31
SMARCD3-208ENST00000472789 B4GALNT3Q6L9W6 998 aa13.12□□□□□ -0.31
SMARCD3-208ENST00000472789 HELBQ8NG08 1087 aaPredicted RBP13.12□□□□□ -0.31
SMARCD3-208ENST00000472789 KLHDC4Q8TBB5 520 aa13.12□□□□□ -0.31
SMARCD3-208ENST00000472789 GPR101Q96P66 508 aaPredicted RBP13.12□□□□□ -0.31
SMARCD3-208ENST00000472789 ANKRD2Q9GZV1 360 aa13.12□□□□□ -0.31
SMARCD3-208ENST00000472789 SRGAP3O43295 1099 aa13.11□□□□□ -0.31
SMARCD3-208ENST00000472789 CHRNDQ07001 517 aa13.11□□□□□ -0.31
SMARCD3-208ENST00000472789 FSTL1Q12841 308 aa13.11□□□□□ -0.31
SMARCD3-208ENST00000472789 WASHC4Q2M389 1173 aa13.11□□□□□ -0.31
SMARCD3-208ENST00000472789 NIM1KQ8IY84 436 aa13.11□□□□□ -0.31
SMARCD3-208ENST00000472789 TBC1D16Q8TBP0 767 aa13.11□□□□□ -0.31
SMARCD3-208ENST00000472789 EYA3Q99504 573 aa13.11□□□□□ -0.31
SMARCD3-208ENST00000472789 RTFDC1Q9BY42 306 aaPredicted RBP13.11□□□□□ -0.31
SMARCD3-208ENST00000472789 PUS3Q9BZE2 481 aaKnown RBP13.11□□□□□ -0.31
SMARCD3-208ENST00000472789 SIL1Q9H173 461 aa13.11□□□□□ -0.31
SMARCD3-208ENST00000472789 POLLQ9UGP5 575 aa13.11□□□□□ -0.31
SMARCD3-208ENST00000472789 SBF1O95248 1867 aa13.1□□□□□ -0.31
SMARCD3-208ENST00000472789 TAF5LO75529 589 aa13.1□□□□□ -0.31
SMARCD3-208ENST00000472789 ATP2B4P23634 1241 aa13.1□□□□□ -0.31
SMARCD3-208ENST00000472789 CENPQQ7L2Z9 268 aaPredicted RBP13.1□□□□□ -0.31
SMARCD3-208ENST00000472789 C16orf71Q8IYS4 520 aaPredicted RBP13.1□□□□□ -0.31
SMARCD3-208ENST00000472789 ZC3H12CQ9C0D7 883 aaKnown RBP13.1□□□□□ -0.31
SMARCD3-208ENST00000472789 PODXL2Q9NZ53 605 aa13.1□□□□□ -0.31
SMARCD3-208ENST00000472789 SNED1Q8TER0 1413 aa13.1□□□□□ -0.31
SMARCD3-208ENST00000472789 LRRC37AA6NMS7 1700 aa13.09□□□□□ -0.31
SMARCD3-208ENST00000472789 CCDC88AQ3V6T2 1871 aa13.09□□□□□ -0.31
SMARCD3-208ENST00000472789 LRRC24Q50LG9 513 aa13.09□□□□□ -0.31
SMARCD3-208ENST00000472789 METTL24Q5JXM2 366 aa13.09□□□□□ -0.31
SMARCD3-208ENST00000472789 RPAP2Q8IXW5 612 aaPredicted RBP13.09□□□□□ -0.31
SMARCD3-208ENST00000472789 RRAGCQ9HB90 399 aa13.09□□□□□ -0.31
SMARCD3-208ENST00000472789 PA2G4Q9UQ80 394 aaKnown RBP13.09□□□□□ -0.31
SMARCD3-208ENST00000472789 KDM2BQ8NHM5 1336 aa13.09□□□□□ -0.31
SMARCD3-208ENST00000472789 HMMRO75330 724 aa13.08□□□□□ -0.32
SMARCD3-208ENST00000472789 RFX5P48382 616 aaPredicted RBP13.08□□□□□ -0.32
SMARCD3-208ENST00000472789 EIF6P56537 245 aaKnown RBP13.08□□□□□ -0.32
SMARCD3-208ENST00000472789 KIAA2012Q0VF49 1180 aa13.08□□□□□ -0.32
SMARCD3-208ENST00000472789 DOK7Q18PE1 504 aa13.08□□□□□ -0.32
SMARCD3-208ENST00000472789 DPY19L2Q6NUT2 758 aa13.08□□□□□ -0.32
SMARCD3-208ENST00000472789 DBNDD1Q9H9R9 158 aa13.08□□□□□ -0.32
SMARCD3-208ENST00000472789 ZNF804BA4D1E1 1349 aa13.08□□□□□ -0.32
SMARCD3-208ENST00000472789 MROH5Q6ZUA9 1318 aa13.08□□□□□ -0.32
SMARCD3-208ENST00000472789 PNMA6EA0A0J9YXQ4 647 aa13.07□□□□□ -0.32
SMARCD3-208ENST00000472789 WTIPA6NIX2 430 aaPredicted RBP13.07□□□□□ -0.32
SMARCD3-208ENST00000472789 SNAP23O00161 211 aa13.07□□□□□ -0.32
SMARCD3-208ENST00000472789 EYA2O00167 538 aa13.07□□□□□ -0.32
SMARCD3-208ENST00000472789 CAPN15O75808 1086 aa13.07□□□□□ -0.32
SMARCD3-208ENST00000472789 PTPN12Q05209 780 aaKnown RBP13.07□□□□□ -0.32
SMARCD3-208ENST00000472789 OS9Q13438 667 aaPredicted RBP13.07□□□□□ -0.32
SMARCD3-208ENST00000472789 HDAC1Q13547 482 aaPredicted RBP13.07□□□□□ -0.32
SMARCD3-208ENST00000472789 VPS33BQ9H267 617 aa13.07□□□□□ -0.32
SMARCD3-208ENST00000472789 LEMD3Q9Y2U8 911 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms