RNA–Protein interactions for RNA: ENST00000469163.1

NUP50-214, Transcript of nucleoporin 50, humanhuman

TSL 2

Gene NUP50, Length 3,507 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-214ENST00000469163 IL16Q14005 1332 aa11.66□□□□□ -0.54
NUP50-214ENST00000469163 STRCP1A6NGW2 1772 aa11.66□□□□□ -0.54
NUP50-214ENST00000469163 LMBR1LQ6UX01 489 aa11.65□□□□□ -0.54
NUP50-214ENST00000469163 AACSQ86V21 672 aa11.65□□□□□ -0.54
NUP50-214ENST00000469163 USP31Q70CQ4 1352 aa11.65□□□□□ -0.54
NUP50-214ENST00000469163 CAND2O75155 1236 aa11.65□□□□□ -0.54
NUP50-214ENST00000469163 SLC4A8Q2Y0W8 1093 aa11.65□□□□□ -0.54
NUP50-214ENST00000469163 PACS2Q86VP3 889 aa11.65□□□□□ -0.54
NUP50-214ENST00000469163 FAM184AQ8NB25 1140 aa11.65□□□□□ -0.54
NUP50-214ENST00000469163 BOLA2Q9H3K6 86 aa11.65□□□□□ -0.54
NUP50-214ENST00000469163 SLC24A3Q9HC58 644 aa11.65□□□□□ -0.54
NUP50-214ENST00000469163 ANO2Q9NQ90 1003 aa11.65□□□□□ -0.54
NUP50-214ENST00000469163 RRP15Q9Y3B9 282 aaKnown RBP11.65□□□□□ -0.54
NUP50-214ENST00000469163 CHD2O14647 1828 aaKnown RBP11.65□□□□□ -0.54
NUP50-214ENST00000469163 SNAP23O00161 211 aa11.65□□□□□ -0.54
NUP50-214ENST00000469163 BAG4O95429 457 aaKnown RBP11.65□□□□□ -0.54
NUP50-214ENST00000469163 LIG1P18858 919 aa11.65□□□□□ -0.54
NUP50-214ENST00000469163 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.65□□□□□ -0.54
NUP50-214ENST00000469163 PPFIA3O75145 1194 aa11.64□□□□□ -0.55
NUP50-214ENST00000469163 FKBP4Q02790 459 aaKnown RBP eCLIP11.64□□□□□ -0.55
NUP50-214ENST00000469163 SEPT12Q8IYM1 358 aa11.64□□□□□ -0.55
NUP50-214ENST00000469163 ITFG2Q969R8 447 aa11.64□□□□□ -0.55
NUP50-214ENST00000469163 BICC1Q9H694 974 aaKnown RBP11.64□□□□□ -0.55
NUP50-214ENST00000469163 CNNM1Q9NRU3 951 aa11.64□□□□□ -0.55
NUP50-214ENST00000469163 GPS2Q13227 327 aa11.64□□□□□ -0.55
NUP50-214ENST00000469163 DZIP3Q86Y13 1208 aaKnown RBP11.64□□□□□ -0.55
NUP50-214ENST00000469163 TPM3P06753 285 aa11.63□□□□□ -0.55
NUP50-214ENST00000469163 PRPF40AO75400 957 aaKnown RBP11.63□□□□□ -0.55
NUP50-214ENST00000469163 LRSAM1Q6UWE0 723 aa11.63□□□□□ -0.55
NUP50-214ENST00000469163 JMYQ8N9B5 988 aa11.63□□□□□ -0.55
NUP50-214ENST00000469163 MARCH10Q8NA82 808 aaPredicted RBP11.63□□□□□ -0.55
NUP50-214ENST00000469163 CCDC112Q8NEF3 446 aa11.63□□□□□ -0.55
NUP50-214ENST00000469163 ZNF397Q8NF99 534 aaPredicted RBP11.63□□□□□ -0.55
NUP50-214ENST00000469163 HYPKQ9NX55 129 aa11.63□□□□□ -0.55
NUP50-214ENST00000469163 NIP7Q9Y221 180 aaKnown RBP eCLIP11.63□□□□□ -0.55
NUP50-214ENST00000469163 NEBLO76041 1014 aa11.63□□□□□ -0.55
NUP50-214ENST00000469163 CCT2P78371 535 aaKnown RBP11.63□□□□□ -0.55
NUP50-214ENST00000469163 BMS1Q14692 1282 aaKnown RBP11.63□□□□□ -0.55
NUP50-214ENST00000469163 KSR2Q6VAB6 950 aa11.63□□□□□ -0.55
NUP50-214ENST00000469163 SRLQ86TD4 932 aa11.63□□□□□ -0.55
NUP50-214ENST00000469163 USP44Q9H0E7 712 aa11.63□□□□□ -0.55
NUP50-214ENST00000469163 NUCKS1Q9H1E3 243 aaKnown RBP11.63□□□□□ -0.55
NUP50-214ENST00000469163 USP25Q9UHP3 1055 aa11.63□□□□□ -0.55
NUP50-214ENST00000469163 MCTP2Q6DN12 878 aa11.62□□□□□ -0.55
NUP50-214ENST00000469163 UNC5CLQ8IV45 518 aa11.62□□□□□ -0.55
NUP50-214ENST00000469163 PXDNQ92626 1479 aa11.62□□□□□ -0.55
NUP50-214ENST00000469163 EDC3Q96F86 508 aaKnown RBP11.62□□□□□ -0.55
NUP50-214ENST00000469163 CCNL1Q9UK58 526 aaPredicted RBP11.62□□□□□ -0.55
NUP50-214ENST00000469163 SCP2P22307 547 aa11.62□□□□□ -0.55
NUP50-214ENST00000469163 POLD1P28340 1107 aa11.62□□□□□ -0.55
NUP50-214ENST00000469163 KMT5BQ4FZB7 885 aa11.62□□□□□ -0.55
NUP50-214ENST00000469163 CEP85Q6P2H3 762 aa11.62□□□□□ -0.55
NUP50-214ENST00000469163 C16orf45Q96MC5 204 aaPredicted RBP11.62□□□□□ -0.55
NUP50-214ENST00000469163 LRRCC1Q9C099 1032 aa11.62□□□□□ -0.55
NUP50-214ENST00000469163 MAP9Q49MG5 647 aa11.61□□□□□ -0.55
NUP50-214ENST00000469163 ZC3H12AQ5D1E8 599 aaKnown RBP11.61□□□□□ -0.55
NUP50-214ENST00000469163 MUM1L1Q5H9M0 696 aa11.61□□□□□ -0.55
NUP50-214ENST00000469163 NAIF1Q69YI7 327 aaPredicted RBP11.61□□□□□ -0.55
NUP50-214ENST00000469163 CWC27Q6UX04 472 aaKnown RBP11.61□□□□□ -0.55
NUP50-214ENST00000469163 CLASRPQ8N2M8 674 aaKnown RBP11.61□□□□□ -0.55
NUP50-214ENST00000469163 DDX21Q9NR30 783 aaKnown RBP eCLIP11.61□□□□□ -0.55
NUP50-214ENST00000469163 SRP68Q9UHB9 627 aaKnown RBP11.61□□□□□ -0.55
NUP50-214ENST00000469163 MNAT1P51948 309 aa11.61□□□□□ -0.55
NUP50-214ENST00000469163 TIMM10P62072 90 aa11.61□□□□□ -0.55
NUP50-214ENST00000469163 HLFQ16534 295 aa11.61□□□□□ -0.55
NUP50-214ENST00000469163 CCDC57Q2TAC2 916 aa11.61□□□□□ -0.55
NUP50-214ENST00000469163 SIRT2Q8IXJ6 389 aa11.61□□□□□ -0.55
NUP50-214ENST00000469163 SUCLG2Q96I99 432 aa11.61□□□□□ -0.55
NUP50-214ENST00000469163 TFCP2L1Q9NZI6 479 aa11.61□□□□□ -0.55
NUP50-214ENST00000469163 GRM8O00222 908 aa11.61□□□□□ -0.55
NUP50-214ENST00000469163 ZPR1O75312 459 aa11.61□□□□□ -0.55
NUP50-214ENST00000469163 IPO7O95373 1038 aaKnown RBP11.61□□□□□ -0.55
NUP50-214ENST00000469163 MEGF6O75095 1541 aa11.61□□□□□ -0.55
NUP50-214ENST00000469163 MAFGO15525 162 aa11.6□□□□□ -0.55
NUP50-214ENST00000469163 TSGA10IPQ3SY00 556 aa11.6□□□□□ -0.55
NUP50-214ENST00000469163 ATG3Q9NT62 314 aa11.6□□□□□ -0.55
NUP50-214ENST00000469163 SPTLC3Q9NUV7 552 aa11.6□□□□□ -0.55
NUP50-214ENST00000469163 USP32Q8NFA0 1604 aa11.6□□□□□ -0.55
NUP50-214ENST00000469163 NALCNQ8IZF0 1738 aa11.6□□□□□ -0.55
NUP50-214ENST00000469163 LOC102724428A0A0B4J2F2 783 aa11.6□□□□□ -0.55
NUP50-214ENST00000469163 APBA3O96018 575 aa11.6□□□□□ -0.55
NUP50-214ENST00000469163 SIK1P57059 783 aa11.6□□□□□ -0.55
NUP50-214ENST00000469163 AK7Q96M32 723 aa11.6□□□□□ -0.55
NUP50-214ENST00000469163 BSDC1Q9NW68 430 aaPredicted RBP11.6□□□□□ -0.55
NUP50-214ENST00000469163 KLHL33A6NCF5 533 aa11.6□□□□□ -0.55
NUP50-214ENST00000469163 GSCP56915 257 aaPredicted RBP11.6□□□□□ -0.55
NUP50-214ENST00000469163 NBPF3Q9H094 633 aa11.6□□□□□ -0.55
NUP50-214ENST00000469163 NBPF26B4DH59 902 aa11.59□□□□□ -0.55
NUP50-214ENST00000469163 NBPF14Q5TI25 921 aa11.59□□□□□ -0.55
NUP50-214ENST00000469163 SMC5Q8IY18 1101 aa11.59□□□□□ -0.55
NUP50-214ENST00000469163 NBPF15Q8N660 670 aa11.59□□□□□ -0.55
NUP50-214ENST00000469163 RFC4P35249 363 aa11.59□□□□□ -0.55
NUP50-214ENST00000469163 RBM6P78332 1123 aaKnown RBP11.59□□□□□ -0.55
NUP50-214ENST00000469163 VPS37DQ86XT2 251 aa11.59□□□□□ -0.55
NUP50-214ENST00000469163 CCDC97Q96F63 343 aaPredicted RBP11.59□□□□□ -0.55
NUP50-214ENST00000469163 MTMR7Q9Y216 660 aa11.59□□□□□ -0.55
NUP50-214ENST00000469163 HTATSF1O43719 755 aaKnown RBP11.59□□□□□ -0.55
NUP50-214ENST00000469163 TAF5LO75529 589 aa11.59□□□□□ -0.55
NUP50-214ENST00000469163 FOSBP53539 338 aa11.59□□□□□ -0.55
NUP50-214ENST00000469163 KIF3CO14782 793 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms