RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 RTFDC1Q9BY42 306 aaPredicted RBP24.7■■□□□ 1.54
COL9A3-204ENST00000463487 PODXL2Q9NZ53 605 aa24.7■■□□□ 1.54
COL9A3-204ENST00000463487 IARSP41252 1262 aaKnown RBP24.69■■□□□ 1.54
COL9A3-204ENST00000463487 GPSM2P81274 684 aa24.69■■□□□ 1.54
COL9A3-204ENST00000463487 ZNF277Q9NRM2 450 aaPredicted RBP24.69■■□□□ 1.54
COL9A3-204ENST00000463487 GGA1Q9UJY5 639 aa24.69■■□□□ 1.54
COL9A3-204ENST00000463487 MINPP1Q9UNW1 487 aa24.69■■□□□ 1.54
COL9A3-204ENST00000463487 COL4A1P02462 1669 aa24.69■■□□□ 1.54
COL9A3-204ENST00000463487 UTRNP46939 3433 aa24.68■■□□□ 1.54
COL9A3-204ENST00000463487 SBF1O95248 1867 aa24.68■■□□□ 1.54
COL9A3-204ENST00000463487 C6orf229H3BNL8 230 aa24.68■■□□□ 1.54
COL9A3-204ENST00000463487 YY1P25490 414 aa24.68■■□□□ 1.54
COL9A3-204ENST00000463487 JDP2Q8WYK2 163 aa24.68■■□□□ 1.54
COL9A3-204ENST00000463487 SRGAP3O43295 1099 aa24.67■■□□□ 1.54
COL9A3-204ENST00000463487 ATP2B4P23634 1241 aa24.67■■□□□ 1.54
COL9A3-204ENST00000463487 MTX1Q13505 466 aa24.67■■□□□ 1.54
COL9A3-204ENST00000463487 LARGE2Q8N3Y3 721 aa24.67■■□□□ 1.54
COL9A3-204ENST00000463487 PPIP5K2O43314 1243 aa24.66■■□□□ 1.54
COL9A3-204ENST00000463487 UFL1O94874 794 aa24.66■■□□□ 1.54
COL9A3-204ENST00000463487 ZNF594Q96JF6 807 aaPredicted RBP24.66■■□□□ 1.54
COL9A3-204ENST00000463487 KCNJ4P48050 445 aa24.65■■□□□ 1.54
COL9A3-204ENST00000463487 CHRNDQ07001 517 aa24.65■■□□□ 1.54
COL9A3-204ENST00000463487 WASHC4Q2M389 1173 aa24.65■■□□□ 1.54
COL9A3-204ENST00000463487 CCDC88AQ3V6T2 1871 aa24.65■■□□□ 1.54
COL9A3-204ENST00000463487 FBXO3Q9UK99 471 aa24.65■■□□□ 1.54
COL9A3-204ENST00000463487 LEMD3Q9Y2U8 911 aa24.65■■□□□ 1.54
COL9A3-204ENST00000463487 MROH5Q6ZUA9 1318 aa24.64■■□□□ 1.54
COL9A3-204ENST00000463487 C20orf194Q5TEA3 1177 aa24.64■■□□□ 1.54
COL9A3-204ENST00000463487 SLC51AQ86UW1 340 aa24.64■■□□□ 1.54
COL9A3-204ENST00000463487 TBC1D16Q8TBP0 767 aa24.64■■□□□ 1.54
COL9A3-204ENST00000463487 DICER1Q9UPY3 1922 aaKnown RBP24.63■■□□□ 1.53
COL9A3-204ENST00000463487 KIAA2012Q0VF49 1180 aa24.63■■□□□ 1.53
COL9A3-204ENST00000463487 AOC3Q16853 763 aa24.63■■□□□ 1.53
COL9A3-204ENST00000463487 NIM1KQ8IY84 436 aa24.63■■□□□ 1.53
COL9A3-204ENST00000463487 ZC3H12CQ9C0D7 883 aaKnown RBP24.63■■□□□ 1.53
COL9A3-204ENST00000463487 LTBP1Q14766 1721 aa24.62■■□□□ 1.53
COL9A3-204ENST00000463487 G3V3G9 751 aa24.62■■□□□ 1.53
COL9A3-204ENST00000463487 DCAF8Q5TAQ9 597 aa24.62■■□□□ 1.53
COL9A3-204ENST00000463487 C1orf115Q9H7X2 142 aa24.62■■□□□ 1.53
COL9A3-204ENST00000463487 POLLQ9UGP5 575 aa24.62■■□□□ 1.53
COL9A3-204ENST00000463487 DUOX1Q9NRD9 1551 aa24.62■■□□□ 1.53
COL9A3-204ENST00000463487 TIAM2Q8IVF5 1701 aa24.61■■□□□ 1.53
COL9A3-204ENST00000463487 EYA2O00167 538 aa24.61■■□□□ 1.53
COL9A3-204ENST00000463487 CIAO1O76071 339 aa24.61■■□□□ 1.53
COL9A3-204ENST00000463487 RFX5P48382 616 aaPredicted RBP24.61■■□□□ 1.53
COL9A3-204ENST00000463487 PRELPP51888 382 aa24.61■■□□□ 1.53
COL9A3-204ENST00000463487 PTPN12Q05209 780 aaKnown RBP24.61■■□□□ 1.53
COL9A3-204ENST00000463487 METTL24Q5JXM2 366 aa24.61■■□□□ 1.53
COL9A3-204ENST00000463487 ZBTB40Q9NUA8 1239 aa24.61■■□□□ 1.53
COL9A3-204ENST00000463487 ATP8B2P98198 1209 aa24.6■■□□□ 1.53
COL9A3-204ENST00000463487 DPY19L2Q6NUT2 758 aa24.6■■□□□ 1.53
COL9A3-204ENST00000463487 KLHDC4Q8TBB5 520 aa24.6■■□□□ 1.53
COL9A3-204ENST00000463487 COPRSQ9NQ92 184 aa24.6■■□□□ 1.53
COL9A3-204ENST00000463487 ZNF804BA4D1E1 1349 aa24.6■■□□□ 1.53
COL9A3-204ENST00000463487 PUS3Q9BZE2 481 aaKnown RBP24.59■■□□□ 1.53
COL9A3-204ENST00000463487 RIPOR2Q9Y4F9 1068 aa24.59■■□□□ 1.53
COL9A3-204ENST00000463487 MED23Q9ULK4 1368 aa24.58■■□□□ 1.53
COL9A3-204ENST00000463487 HMMRO75330 724 aa24.58■■□□□ 1.53
COL9A3-204ENST00000463487 IL15P40933 162 aaPredicted RBP24.58■■□□□ 1.53
COL9A3-204ENST00000463487 EIF6P56537 245 aaKnown RBP24.58■■□□□ 1.53
COL9A3-204ENST00000463487 RPAP2Q8IXW5 612 aaPredicted RBP24.58■■□□□ 1.53
COL9A3-204ENST00000463487 SIL1Q9H173 461 aa24.58■■□□□ 1.53
COL9A3-204ENST00000463487 SUPT16HQ9Y5B9 1047 aaKnown RBP24.58■■□□□ 1.53
COL9A3-204ENST00000463487 KDM2BQ8NHM5 1336 aa24.58■■□□□ 1.52
COL9A3-204ENST00000463487 RIMBP2O15034 1052 aa24.57■■□□□ 1.52
COL9A3-204ENST00000463487 LRRC24Q50LG9 513 aa24.57■■□□□ 1.52
COL9A3-204ENST00000463487 CEP85Q6P2H3 762 aa24.57■■□□□ 1.52
COL9A3-204ENST00000463487 HELBQ8NG08 1087 aaPredicted RBP24.57■■□□□ 1.52
COL9A3-204ENST00000463487 PNMA6EA0A0J9YXQ4 647 aa24.56■■□□□ 1.52
COL9A3-204ENST00000463487 TAF5LO75529 589 aa24.56■■□□□ 1.52
COL9A3-204ENST00000463487 SSH3Q8TE77 659 aa24.56■■□□□ 1.52
COL9A3-204ENST00000463487 ZNRF3Q9ULT6 936 aa24.56■■□□□ 1.52
COL9A3-204ENST00000463487 G3BP1Q13283 466 aaKnown RBP eCLIP24.55■■□□□ 1.52
COL9A3-204ENST00000463487 UBE4AQ14139 1066 aa24.55■■□□□ 1.52
COL9A3-204ENST00000463487 CEP126Q9P2H0 1117 aa24.55■■□□□ 1.52
COL9A3-204ENST00000463487 PA2G4Q9UQ80 394 aaKnown RBP24.55■■□□□ 1.52
COL9A3-204ENST00000463487 FZD9O00144 591 aa24.54■■□□□ 1.52
COL9A3-204ENST00000463487 PDE8BO95263 885 aa24.54■■□□□ 1.52
COL9A3-204ENST00000463487 AAMPQ13685 434 aa24.54■■□□□ 1.52
COL9A3-204ENST00000463487 POLA2Q14181 598 aa24.54■■□□□ 1.52
COL9A3-204ENST00000463487 A0A1B0GUL6 1792 aa24.54■■□□□ 1.52
COL9A3-204ENST00000463487 GLTPD2A6NH11 291 aa24.53■■□□□ 1.52
COL9A3-204ENST00000463487 OS9Q13438 667 aaPredicted RBP24.53■■□□□ 1.52
COL9A3-204ENST00000463487 PUM3Q15397 648 aaKnown RBP24.53■■□□□ 1.52
COL9A3-204ENST00000463487 GPR101Q96P66 508 aaPredicted RBP24.53■■□□□ 1.52
COL9A3-204ENST00000463487 C15orf52Q6ZUT6 534 aaKnown RBP24.52■■□□□ 1.52
COL9A3-204ENST00000463487 ATG9AQ7Z3C6 839 aa24.52■■□□□ 1.52
COL9A3-204ENST00000463487 ZNF804AQ7Z570 1209 aa24.52■■□□□ 1.52
COL9A3-204ENST00000463487 COA1Q9GZY4 146 aa24.52■■□□□ 1.52
COL9A3-204ENST00000463487 ECE2O60344 883 aa24.51■■□□□ 1.51
COL9A3-204ENST00000463487 IFIT1P09914 478 aaKnown RBP24.51■■□□□ 1.51
COL9A3-204ENST00000463487 TNIP1Q15025 636 aa24.51■■□□□ 1.51
COL9A3-204ENST00000463487 HSP90AB4PQ58FF6 505 aa24.51■■□□□ 1.51
COL9A3-204ENST00000463487 CRBNQ96SW2 442 aa24.51■■□□□ 1.51
COL9A3-204ENST00000463487 DBNDD1Q9H9R9 158 aa24.51■■□□□ 1.51
COL9A3-204ENST00000463487 GPBP1L1Q9HC44 474 aaPredicted RBP24.51■■□□□ 1.51
COL9A3-204ENST00000463487 SURF6O75683 361 aaKnown RBP24.5■■□□□ 1.51
COL9A3-204ENST00000463487 SLC5A1P13866 664 aa24.5■■□□□ 1.51
COL9A3-204ENST00000463487 DOK7Q18PE1 504 aa24.5■■□□□ 1.51
COL9A3-204ENST00000463487 PODNQ7Z5L7 613 aa24.5■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 133.1 ms