RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 SRGAP3O43295 1099 aa9.61□□□□□ -0.87
USP4-207ENST00000462673 KCNJ4P48050 445 aa9.61□□□□□ -0.87
USP4-207ENST00000462673 HSP90AB4PQ58FF6 505 aa9.61□□□□□ -0.87
USP4-207ENST00000462673 C3orf67Q6ZVT6 689 aa9.61□□□□□ -0.87
USP4-207ENST00000462673 CELF1Q92879 486 aaKnown RBP9.61□□□□□ -0.87
USP4-207ENST00000462673 PODXL2Q9NZ53 605 aa9.61□□□□□ -0.87
USP4-207ENST00000462673 XDHP47989 1333 aa9.6□□□□□ -0.87
USP4-207ENST00000462673 MROH5Q6ZUA9 1318 aa9.6□□□□□ -0.87
USP4-207ENST00000462673 ZC3H4Q9UPT8 1303 aaKnown RBP9.6□□□□□ -0.87
USP4-207ENST00000462673 PLIN1O60240 522 aa9.6□□□□□ -0.87
USP4-207ENST00000462673 ATP8B2P98198 1209 aa9.6□□□□□ -0.87
USP4-207ENST00000462673 G3BP1Q13283 466 aaKnown RBP eCLIP9.6□□□□□ -0.87
USP4-207ENST00000462673 WASHC4Q2M389 1173 aa9.6□□□□□ -0.87
USP4-207ENST00000462673 PANK1Q8TE04 598 aa9.6□□□□□ -0.87
USP4-207ENST00000462673 MEIS3Q99687 375 aa9.6□□□□□ -0.87
USP4-207ENST00000462673 RTFDC1Q9BY42 306 aaPredicted RBP9.6□□□□□ -0.87
USP4-207ENST00000462673 SEC31BQ9NQW1 1179 aa9.6□□□□□ -0.87
USP4-207ENST00000462673 DAXXQ9UER7 740 aaPredicted RBP9.6□□□□□ -0.87
USP4-207ENST00000462673 GGA1Q9UJY5 639 aa9.6□□□□□ -0.87
USP4-207ENST00000462673 MINPP1Q9UNW1 487 aa9.6□□□□□ -0.87
USP4-207ENST00000462673 COG6Q9Y2V7 657 aa9.6□□□□□ -0.87
USP4-207ENST00000462673 LRRFIP2Q9Y608 721 aaKnown RBP9.6□□□□□ -0.87
USP4-207ENST00000462673 SRCAPQ6ZRS2 3230 aa9.6□□□□□ -0.87
USP4-207ENST00000462673 N4BP2Q86UW6 1770 aaPredicted RBP9.6□□□□□ -0.87
USP4-207ENST00000462673 IL15P40933 162 aaPredicted RBP9.59□□□□□ -0.87
USP4-207ENST00000462673 IARSP41252 1262 aaKnown RBP9.59□□□□□ -0.87
USP4-207ENST00000462673 MTX1Q13505 466 aa9.59□□□□□ -0.87
USP4-207ENST00000462673 FAM161AQ3B820 660 aa9.59□□□□□ -0.87
USP4-207ENST00000462673 LARGE2Q8N3Y3 721 aa9.59□□□□□ -0.87
USP4-207ENST00000462673 CEP126Q9P2H0 1117 aa9.59□□□□□ -0.87
USP4-207ENST00000462673 AKAP2Q9Y2D5 859 aa9.59□□□□□ -0.87
USP4-207ENST00000462673 CIAO1O76071 339 aa9.58□□□□□ -0.88
USP4-207ENST00000462673 RLBP1P12271 317 aa9.58□□□□□ -0.88
USP4-207ENST00000462673 EIF6P56537 245 aaKnown RBP9.58□□□□□ -0.88
USP4-207ENST00000462673 GSE1Q14687 1217 aa9.58□□□□□ -0.88
USP4-207ENST00000462673 CAVIN4Q5BKX8 364 aa9.58□□□□□ -0.88
USP4-207ENST00000462673 CENPQQ7L2Z9 268 aaPredicted RBP9.58□□□□□ -0.88
USP4-207ENST00000462673 ERC1Q8IUD2 1116 aa9.58□□□□□ -0.88
USP4-207ENST00000462673 KAZALD1Q96I82 304 aa9.58□□□□□ -0.88
USP4-207ENST00000462673 COPRSQ9NQ92 184 aa9.58□□□□□ -0.88
USP4-207ENST00000462673 ZBTB40Q9NUA8 1239 aa9.58□□□□□ -0.88
USP4-207ENST00000462673 RNF181Q9P0P0 153 aa9.58□□□□□ -0.88
USP4-207ENST00000462673 KDM2BQ8NHM5 1336 aa9.57□□□□□ -0.88
USP4-207ENST00000462673 ANKRD31Q8N7Z5 1873 aa9.57□□□□□ -0.88
USP4-207ENST00000462673 EYA2O00167 538 aa9.57□□□□□ -0.88
USP4-207ENST00000462673 PPIP5K2O43314 1243 aa9.57□□□□□ -0.88
USP4-207ENST00000462673 UFL1O94874 794 aa9.57□□□□□ -0.88
USP4-207ENST00000462673 CHRNDQ07001 517 aa9.57□□□□□ -0.88
USP4-207ENST00000462673 OS9Q13438 667 aaPredicted RBP9.57□□□□□ -0.88
USP4-207ENST00000462673 UBE4AQ14139 1066 aa9.57□□□□□ -0.88
USP4-207ENST00000462673 TNIP1Q15025 636 aa9.57□□□□□ -0.88
USP4-207ENST00000462673 METTL24Q5JXM2 366 aa9.57□□□□□ -0.88
USP4-207ENST00000462673 EPHA10Q5JZY3 1008 aa9.57□□□□□ -0.88
USP4-207ENST00000462673 C9orf131Q5VYM1 1079 aa9.57□□□□□ -0.88
USP4-207ENST00000462673 PODNQ7Z5L7 613 aa9.57□□□□□ -0.88
USP4-207ENST00000462673 VPS37DQ86XT2 251 aa9.57□□□□□ -0.88
USP4-207ENST00000462673 NIM1KQ8IY84 436 aa9.57□□□□□ -0.88
USP4-207ENST00000462673 ANKRD44Q8N8A2 993 aa9.57□□□□□ -0.88
USP4-207ENST00000462673 TBC1D16Q8TBP0 767 aa9.57□□□□□ -0.88
USP4-207ENST00000462673 DLEC1Q9Y238 1755 aa9.57□□□□□ -0.88
USP4-207ENST00000462673 ZNF804BA4D1E1 1349 aa9.56□□□□□ -0.88
USP4-207ENST00000462673 PDE8BO95263 885 aa9.56□□□□□ -0.88
USP4-207ENST00000462673 IFIT1P09914 478 aaKnown RBP9.56□□□□□ -0.88
USP4-207ENST00000462673 YY1P25490 414 aa9.56□□□□□ -0.88
USP4-207ENST00000462673 MMP14P50281 582 aa9.56□□□□□ -0.88
USP4-207ENST00000462673 GPSM2P81274 684 aa9.56□□□□□ -0.88
USP4-207ENST00000462673 KIAA2012Q0VF49 1180 aa9.56□□□□□ -0.88
USP4-207ENST00000462673 CRBNQ96SW2 442 aa9.56□□□□□ -0.88
USP4-207ENST00000462673 ZNF277Q9NRM2 450 aaPredicted RBP9.56□□□□□ -0.88
USP4-207ENST00000462673 ZNRF3Q9ULT6 936 aa9.56□□□□□ -0.88
USP4-207ENST00000462673 RIPOR2Q9Y4F9 1068 aa9.56□□□□□ -0.88
USP4-207ENST00000462673 ARFGEF1Q9Y6D6 1849 aa9.56□□□□□ -0.88
USP4-207ENST00000462673 DDX60Q8IY21 1712 aaKnown RBP9.56□□□□□ -0.88
USP4-207ENST00000462673 MYH3P11055 1940 aa9.55□□□□□ -0.88
USP4-207ENST00000462673 SLX4Q8IY92 1834 aa9.55□□□□□ -0.88
USP4-207ENST00000462673 NFKBIEO00221 500 aa9.55□□□□□ -0.88
USP4-207ENST00000462673 RAB11FIP3O75154 756 aa9.55□□□□□ -0.88
USP4-207ENST00000462673 SURF6O75683 361 aaKnown RBP9.55□□□□□ -0.88
USP4-207ENST00000462673 PTPN12Q05209 780 aaKnown RBP9.55□□□□□ -0.88
USP4-207ENST00000462673 NFKBIBQ15653 356 aa9.55□□□□□ -0.88
USP4-207ENST00000462673 ZNF804AQ7Z570 1209 aa9.55□□□□□ -0.88
USP4-207ENST00000462673 SSH3Q8TE77 659 aa9.55□□□□□ -0.88
USP4-207ENST00000462673 ZNF594Q96JF6 807 aaPredicted RBP9.55□□□□□ -0.88
USP4-207ENST00000462673 COA1Q9GZY4 146 aa9.55□□□□□ -0.88
USP4-207ENST00000462673 RTN4Q9NQC3 1192 aaKnown RBP9.55□□□□□ -0.88
USP4-207ENST00000462673 GNL3LQ9NVN8 582 aaKnown RBP9.55□□□□□ -0.88
USP4-207ENST00000462673 TNNQ9UQP3 1299 aa9.55□□□□□ -0.88
USP4-207ENST00000462673 LAMB2P55268 1798 aa9.55□□□□□ -0.88
USP4-207ENST00000462673 BRCA1P38398 1863 aaKnown RBP9.54□□□□□ -0.88
USP4-207ENST00000462673 GLTPD2A6NH11 291 aa9.54□□□□□ -0.88
USP4-207ENST00000462673 RIMBP2O15034 1052 aa9.54□□□□□ -0.88
USP4-207ENST00000462673 FRAT2O75474 233 aaPredicted RBP9.54□□□□□ -0.88
USP4-207ENST00000462673 SLC5A1P13866 664 aa9.54□□□□□ -0.88
USP4-207ENST00000462673 PUM3Q15397 648 aaKnown RBP9.54□□□□□ -0.88
USP4-207ENST00000462673 C15orf52Q6ZUT6 534 aaKnown RBP9.54□□□□□ -0.88
USP4-207ENST00000462673 LPIN2Q92539 896 aa9.54□□□□□ -0.88
USP4-207ENST00000462673 POLLQ9UGP5 575 aa9.54□□□□□ -0.88
USP4-207ENST00000462673 KIAA1551Q9HCM1 1747 aa9.53□□□□□ -0.88
USP4-207ENST00000462673 TNRC6CQ9HCJ0 1690 aaKnown RBP9.53□□□□□ -0.88
USP4-207ENST00000462673 IQCA1LA6NCM1 817 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms