RNA–Protein interactions for RNA: ENST00000461055.2

NEDD9-206, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 592 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-206ENST00000461055 ABCC12Q96J65 1359 aa13.33□□□□□ -0.27
NEDD9-206ENST00000461055 PHF14O94880 888 aa13.33□□□□□ -0.28
NEDD9-206ENST00000461055 CCDC152Q4G0S7 254 aa13.33□□□□□ -0.28
NEDD9-206ENST00000461055 RTL5Q5HYW3 569 aaPredicted RBP13.33□□□□□ -0.28
NEDD9-206ENST00000461055 LINC00116Q8NCU8 138 aa13.33□□□□□ -0.28
NEDD9-206ENST00000461055 HAUS7Q99871 368 aa13.33□□□□□ -0.28
NEDD9-206ENST00000461055 NYXQ9GZU5 481 aa13.33□□□□□ -0.28
NEDD9-206ENST00000461055 ANO2Q9NQ90 1003 aa13.33□□□□□ -0.28
NEDD9-206ENST00000461055 DBNLQ9UJU6 430 aaKnown RBP13.33□□□□□ -0.28
NEDD9-206ENST00000461055 GRIN3BO60391 1043 aa13.32□□□□□ -0.28
NEDD9-206ENST00000461055 ITGA6P23229 1130 aa13.32□□□□□ -0.28
NEDD9-206ENST00000461055 CCDC158Q5M9N0 1113 aa13.32□□□□□ -0.28
NEDD9-206ENST00000461055 SUSD4Q5VX71 490 aa13.32□□□□□ -0.28
NEDD9-206ENST00000461055 LDHAL6AQ6ZMR3 332 aa13.32□□□□□ -0.28
NEDD9-206ENST00000461055 NARFQ9UHQ1 456 aa13.32□□□□□ -0.28
NEDD9-206ENST00000461055 NIP7Q9Y221 180 aaKnown RBP eCLIP13.32□□□□□ -0.28
NEDD9-206ENST00000461055 RTCBQ9Y3I0 505 aaKnown RBP13.32□□□□□ -0.28
NEDD9-206ENST00000461055 QSER1Q2KHR3 1735 aa13.32□□□□□ -0.28
NEDD9-206ENST00000461055 UBN2Q6ZU65 1347 aa13.32□□□□□ -0.28
NEDD9-206ENST00000461055 MROH5Q6ZUA9 1318 aa13.32□□□□□ -0.28
NEDD9-206ENST00000461055 AK9Q5TCS8 1911 aa13.31□□□□□ -0.28
NEDD9-206ENST00000461055 ZNF512BQ96KM6 892 aaPredicted RBP13.31□□□□□ -0.28
NEDD9-206ENST00000461055 BOLA2Q9H3K6 86 aa13.31□□□□□ -0.28
NEDD9-206ENST00000461055 CIZ1Q9ULV3 898 aaPredicted RBP13.31□□□□□ -0.28
NEDD9-206ENST00000461055 RIPOR2Q9Y4F9 1068 aa13.31□□□□□ -0.28
NEDD9-206ENST00000461055 A0A1B0GUL7 405 aa13.3□□□□□ -0.28
NEDD9-206ENST00000461055 K7ELQ4 463 aaPredicted RBP13.3□□□□□ -0.28
NEDD9-206ENST00000461055 ZPR1O75312 459 aa13.3□□□□□ -0.28
NEDD9-206ENST00000461055 HSPA4P34932 840 aa13.3□□□□□ -0.28
NEDD9-206ENST00000461055 SLC4A3P48751 1232 aa13.3□□□□□ -0.28
NEDD9-206ENST00000461055 LRRC24Q50LG9 513 aa13.3□□□□□ -0.28
NEDD9-206ENST00000461055 SLC10A5Q5PT55 438 aa13.3□□□□□ -0.28
NEDD9-206ENST00000461055 NEUROD6Q96NK8 337 aa13.3□□□□□ -0.28
NEDD9-206ENST00000461055 DBNDD2Q9BQY9 259 aa13.3□□□□□ -0.28
NEDD9-206ENST00000461055 FSD1Q9BTV5 496 aa13.3□□□□□ -0.28
NEDD9-206ENST00000461055 CNNM1Q9NRU3 951 aa13.3□□□□□ -0.28
NEDD9-206ENST00000461055 TLR7Q9NYK1 1049 aaKnown RBP13.3□□□□□ -0.28
NEDD9-206ENST00000461055 MYH14Q7Z406 1995 aaKnown RBP13.3□□□□□ -0.28
NEDD9-206ENST00000461055 ZNF609O15014 1411 aa13.3□□□□□ -0.28
NEDD9-206ENST00000461055 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.29□□□□□ -0.28
NEDD9-206ENST00000461055 NTSR2O95665 410 aa13.29□□□□□ -0.28
NEDD9-206ENST00000461055 MAP4K4O95819 1239 aaPredicted RBP13.29□□□□□ -0.28
NEDD9-206ENST00000461055 METTL24Q5JXM2 366 aa13.29□□□□□ -0.28
NEDD9-206ENST00000461055 GORABQ5T7V8 394 aa13.29□□□□□ -0.28
NEDD9-206ENST00000461055 CWC27Q6UX04 472 aaKnown RBP13.29□□□□□ -0.28
NEDD9-206ENST00000461055 ZNF594Q96JF6 807 aaPredicted RBP13.29□□□□□ -0.28
NEDD9-206ENST00000461055 CDC5LQ99459 802 aaKnown RBP13.29□□□□□ -0.28
NEDD9-206ENST00000461055 GREM2Q9H772 168 aa13.29□□□□□ -0.28
NEDD9-206ENST00000461055 CD2APQ9Y5K6 639 aa13.29□□□□□ -0.28
NEDD9-206ENST00000461055 MYH3P11055 1940 aa13.29□□□□□ -0.28
NEDD9-206ENST00000461055 ZFYP08048 801 aaPredicted RBP13.28□□□□□ -0.28
NEDD9-206ENST00000461055 IGHMBP2P38935 993 aaKnown RBP13.28□□□□□ -0.28
NEDD9-206ENST00000461055 SF3B3Q15393 1217 aaKnown RBP13.28□□□□□ -0.28
NEDD9-206ENST00000461055 RNF20Q5VTR2 975 aa13.28□□□□□ -0.28
NEDD9-206ENST00000461055 KBTBD3Q8NAB2 608 aa13.28□□□□□ -0.28
NEDD9-206ENST00000461055 KCNB2Q92953 911 aa13.28□□□□□ -0.28
NEDD9-206ENST00000461055 SETDB2Q96T68 719 aa13.28□□□□□ -0.28
NEDD9-206ENST00000461055 MPHOSPH8Q99549 860 aa13.28□□□□□ -0.28
NEDD9-206ENST00000461055 LSG1Q9H089 658 aaKnown RBP13.28□□□□□ -0.28
NEDD9-206ENST00000461055 CHMP5Q9NZZ3 219 aa13.28□□□□□ -0.28
NEDD9-206ENST00000461055 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.28□□□□□ -0.28
NEDD9-206ENST00000461055 BCORQ6W2J9 1755 aa13.27□□□□□ -0.28
NEDD9-206ENST00000461055 SPEF2Q9C093 1822 aa13.27□□□□□ -0.28
NEDD9-206ENST00000461055 GNPATO15228 680 aa13.27□□□□□ -0.29
NEDD9-206ENST00000461055 PDE8BO95263 885 aa13.27□□□□□ -0.29
NEDD9-206ENST00000461055 IFIT1P09914 478 aaKnown RBP13.27□□□□□ -0.29
NEDD9-206ENST00000461055 UQCRFS1P1P0C7P4 283 aa13.27□□□□□ -0.29
NEDD9-206ENST00000461055 ZKSCAN1P17029 563 aaPredicted RBP13.27□□□□□ -0.29
NEDD9-206ENST00000461055 TIMM10P62072 90 aa13.27□□□□□ -0.29
NEDD9-206ENST00000461055 ATP2B3Q16720 1220 aa13.27□□□□□ -0.29
NEDD9-206ENST00000461055 TRAPPC3LQ5T215 181 aa13.27□□□□□ -0.29
NEDD9-206ENST00000461055 TPTE2Q6XPS3 522 aa13.27□□□□□ -0.29
NEDD9-206ENST00000461055 LPIN2Q92539 896 aa13.27□□□□□ -0.29
NEDD9-206ENST00000461055 PUS3Q9BZE2 481 aaKnown RBP13.27□□□□□ -0.29
NEDD9-206ENST00000461055 ANTXR1Q9H6X2 564 aa13.27□□□□□ -0.29
NEDD9-206ENST00000461055 CWC22Q9HCG8 908 aaKnown RBP13.27□□□□□ -0.29
NEDD9-206ENST00000461055 HELLSQ9NRZ9 838 aa13.27□□□□□ -0.29
NEDD9-206ENST00000461055 HSP90AA1P07900 732 aaKnown RBP13.26□□□□□ -0.29
NEDD9-206ENST00000461055 TTF1Q15361 905 aaPredicted RBP13.26□□□□□ -0.29
NEDD9-206ENST00000461055 PUM3Q15397 648 aaKnown RBP13.26□□□□□ -0.29
NEDD9-206ENST00000461055 TTC39AQ5SRH9 613 aa13.26□□□□□ -0.29
NEDD9-206ENST00000461055 XAGE2Q96GT9 111 aa13.26□□□□□ -0.29
NEDD9-206ENST00000461055 TM6SF1Q9BZW5 370 aa13.26□□□□□ -0.29
NEDD9-206ENST00000461055 GPBP1L1Q9HC44 474 aaPredicted RBP13.26□□□□□ -0.29
NEDD9-206ENST00000461055 PAG1Q9NWQ8 432 aa13.26□□□□□ -0.29
NEDD9-206ENST00000461055 HMG20BQ9P0W2 317 aa13.26□□□□□ -0.29
NEDD9-206ENST00000461055 CCDC171Q6TFL3 1326 aa13.25□□□□□ -0.29
NEDD9-206ENST00000461055 SLC5A1P13866 664 aa13.25□□□□□ -0.29
NEDD9-206ENST00000461055 SSFA2P28290 1259 aa13.25□□□□□ -0.29
NEDD9-206ENST00000461055 GTF2E1P29083 439 aaPredicted RBP13.25□□□□□ -0.29
NEDD9-206ENST00000461055 RFC4P35249 363 aa13.25□□□□□ -0.29
NEDD9-206ENST00000461055 MCMDC2Q4G0Z9 681 aa13.25□□□□□ -0.29
NEDD9-206ENST00000461055 IFFO2Q5TF58 517 aa13.25□□□□□ -0.29
NEDD9-206ENST00000461055 ZSCAN25Q6NSZ9 544 aa13.25□□□□□ -0.29
NEDD9-206ENST00000461055 SYNE4Q8N205 404 aa13.25□□□□□ -0.29
NEDD9-206ENST00000461055 VGLL2Q8N8G2 317 aa13.25□□□□□ -0.29
NEDD9-206ENST00000461055 FLAD1Q8NFF5 587 aa13.25□□□□□ -0.29
NEDD9-206ENST00000461055 MAP4K1Q92918 833 aa13.25□□□□□ -0.29
NEDD9-206ENST00000461055 HCLS1P14317 486 aaPredicted RBP13.24□□□□□ -0.29
NEDD9-206ENST00000461055 PSMA5P28066 241 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms