RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 RAD17O75943 681 aa23.59■■□□□ 1.37
HOXD3-204ENST00000459979 HSPA8P11142 646 aaKnown RBP23.59■■□□□ 1.37
HOXD3-204ENST00000459979 CWF19L2Q2TBE0 894 aaKnown RBP23.59■■□□□ 1.37
HOXD3-204ENST00000459979 CYP4F22Q6NT55 531 aa23.59■■□□□ 1.37
HOXD3-204ENST00000459979 VPS33BQ9H267 617 aa23.59■■□□□ 1.37
HOXD3-204ENST00000459979 ADARB2Q9NS39 739 aaKnown RBP23.59■■□□□ 1.37
HOXD3-204ENST00000459979 H7C1W4 665 aa23.58■■□□□ 1.37
HOXD3-204ENST00000459979 KIAA2012Q0VF49 1180 aa23.58■■□□□ 1.37
HOXD3-204ENST00000459979 CAPNS2Q96L46 248 aa23.58■■□□□ 1.37
HOXD3-204ENST00000459979 GCKRQ14397 625 aa23.57■■□□□ 1.36
HOXD3-204ENST00000459979 CIAPIN1Q6FI81 312 aa23.57■■□□□ 1.36
HOXD3-204ENST00000459979 SHTN1A0MZ66 631 aa23.56■■□□□ 1.36
HOXD3-204ENST00000459979 CELF1Q92879 486 aaKnown RBP23.56■■□□□ 1.36
HOXD3-204ENST00000459979 BCL2L13Q9BXK5 485 aa23.56■■□□□ 1.36
HOXD3-204ENST00000459979 GLIS2Q9BZE0 524 aaPredicted RBP23.56■■□□□ 1.36
HOXD3-204ENST00000459979 YDJCA8MPS7 323 aa23.55■■□□□ 1.36
HOXD3-204ENST00000459979 CT47B1P0C2W7 299 aaPredicted RBP23.55■■□□□ 1.36
HOXD3-204ENST00000459979 MAP2K1Q02750 393 aaPredicted RBP23.55■■□□□ 1.36
HOXD3-204ENST00000459979 CCDC152Q4G0S7 254 aa23.55■■□□□ 1.36
HOXD3-204ENST00000459979 JARID2Q92833 1246 aaPredicted RBP23.55■■□□□ 1.36
HOXD3-204ENST00000459979 MYH3P11055 1940 aa23.55■■□□□ 1.36
HOXD3-204ENST00000459979 RPS8P62241 208 aaKnown RBP23.54■■□□□ 1.36
HOXD3-204ENST00000459979 BEND3Q5T5X7 828 aa23.54■■□□□ 1.36
HOXD3-204ENST00000459979 MRPL50Q8N5N7 158 aaKnown RBP23.54■■□□□ 1.36
HOXD3-204ENST00000459979 TRPM4Q8TD43 1214 aa23.54■■□□□ 1.36
HOXD3-204ENST00000459979 PLA2G12BQ9BX93 195 aa23.54■■□□□ 1.36
HOXD3-204ENST00000459979 TLL2Q9Y6L7 1015 aa23.54■■□□□ 1.36
HOXD3-204ENST00000459979 F6X3S4 739 aa23.53■■□□□ 1.36
HOXD3-204ENST00000459979 HIRAP54198 1017 aaPredicted RBP23.53■■□□□ 1.36
HOXD3-204ENST00000459979 CASP7P55210 303 aa23.53■■□□□ 1.36
HOXD3-204ENST00000459979 POLR2AP24928 1970 aaKnown RBP23.52■■□□□ 1.36
HOXD3-204ENST00000459979 AOC2O75106 756 aa23.52■■□□□ 1.36
HOXD3-204ENST00000459979 CELF2O95319 508 aaKnown RBP23.52■■□□□ 1.36
HOXD3-204ENST00000459979 ECE1P42892 770 aa23.52■■□□□ 1.36
HOXD3-204ENST00000459979 CTSWP56202 376 aa23.52■■□□□ 1.36
HOXD3-204ENST00000459979 TNIP1Q15025 636 aa23.52■■□□□ 1.36
HOXD3-204ENST00000459979 ALDH1L2Q3SY69 923 aa23.52■■□□□ 1.36
HOXD3-204ENST00000459979 UBE3BQ7Z3V4 1068 aa23.52■■□□□ 1.36
HOXD3-204ENST00000459979 TTLL11Q8NHH1 800 aa23.52■■□□□ 1.36
HOXD3-204ENST00000459979 SSH1Q8WYL5 1049 aa23.52■■□□□ 1.36
HOXD3-204ENST00000459979 GPR101Q96P66 508 aaPredicted RBP23.52■■□□□ 1.36
HOXD3-204ENST00000459979 RTL9Q8NET4 1388 aa23.52■■□□□ 1.36
HOXD3-204ENST00000459979 ZNF408Q9H9D4 720 aa23.51■■□□□ 1.35
HOXD3-204ENST00000459979 SEC31BQ9NQW1 1179 aa23.51■■□□□ 1.35
HOXD3-204ENST00000459979 ZBTB12Q9Y330 459 aaPredicted RBP23.51■■□□□ 1.35
HOXD3-204ENST00000459979 RIMBP2O15034 1052 aa23.5■■□□□ 1.35
HOXD3-204ENST00000459979 DBNDD1Q9H9R9 158 aa23.5■■□□□ 1.35
HOXD3-204ENST00000459979 CNOT7Q9UIV1 285 aaKnown RBP23.5■■□□□ 1.35
HOXD3-204ENST00000459979 TSKSQ9UJT2 592 aa23.5■■□□□ 1.35
HOXD3-204ENST00000459979 NSFL1CQ9UNZ2 370 aaKnown RBP23.5■■□□□ 1.35
HOXD3-204ENST00000459979 PTPRCP08575 1304 aa23.5■■□□□ 1.35
HOXD3-204ENST00000459979 ALDH1L1O75891 902 aa23.49■■□□□ 1.35
HOXD3-204ENST00000459979 GPSM2P81274 684 aa23.48■■□□□ 1.35
HOXD3-204ENST00000459979 DLK2Q6UY11 383 aa23.48■■□□□ 1.35
HOXD3-204ENST00000459979 SAPCD2Q86UD0 394 aa23.48■■□□□ 1.35
HOXD3-204ENST00000459979 MICALL2Q8IY33 904 aa23.48■■□□□ 1.35
HOXD3-204ENST00000459979 PGAP2Q9UHJ9 254 aa23.48■■□□□ 1.35
HOXD3-204ENST00000459979 SCN9AQ15858 1988 aa23.47■■□□□ 1.35
HOXD3-204ENST00000459979 C6orf229H3BNL8 230 aa23.47■■□□□ 1.35
HOXD3-204ENST00000459979 PSMD14O00487 310 aa23.47■■□□□ 1.35
HOXD3-204ENST00000459979 CSF1RP07333 972 aa23.47■■□□□ 1.35
HOXD3-204ENST00000459979 WASHC4Q2M389 1173 aa23.47■■□□□ 1.35
HOXD3-204ENST00000459979 BEGAINQ9BUH8 593 aa23.47■■□□□ 1.35
HOXD3-204ENST00000459979 POLLQ9UGP5 575 aa23.47■■□□□ 1.35
HOXD3-204ENST00000459979 BRPF1P55201 1214 aaPredicted RBP23.46■■□□□ 1.35
HOXD3-204ENST00000459979 SAMD7Q7Z3H4 446 aa23.46■■□□□ 1.35
HOXD3-204ENST00000459979 ABHD8Q96I13 439 aa23.46■■□□□ 1.35
HOXD3-204ENST00000459979 CDC5LQ99459 802 aaKnown RBP23.46■■□□□ 1.35
HOXD3-204ENST00000459979 KCNQ5Q9NR82 932 aa23.46■■□□□ 1.35
HOXD3-204ENST00000459979 PODXL2Q9NZ53 605 aa23.46■■□□□ 1.35
HOXD3-204ENST00000459979 H7C1D1 291 aa23.45■■□□□ 1.34
HOXD3-204ENST00000459979 DOK7Q18PE1 504 aa23.45■■□□□ 1.34
HOXD3-204ENST00000459979 ANKRD18AQ8IVF6 992 aa23.45■■□□□ 1.34
HOXD3-204ENST00000459979 CCDC85AQ96PX6 553 aaPredicted RBP23.45■■□□□ 1.34
HOXD3-204ENST00000459979 SRCIN1Q9C0H9 1055 aa23.45■■□□□ 1.34
HOXD3-204ENST00000459979 GREM2Q9H772 168 aa23.45■■□□□ 1.34
HOXD3-204ENST00000459979 CASP8AP2Q9UKL3 1982 aa23.45■■□□□ 1.34
HOXD3-204ENST00000459979 GRM8O00222 908 aa23.44■■□□□ 1.34
HOXD3-204ENST00000459979 EGFRP00533 1210 aa23.44■■□□□ 1.34
HOXD3-204ENST00000459979 CDC37L1Q7L3B6 337 aa23.44■■□□□ 1.34
HOXD3-204ENST00000459979 USP48Q86UV5 1035 aa23.44■■□□□ 1.34
HOXD3-204ENST00000459979 ZC3H15Q8WU90 426 aaKnown RBP23.44■■□□□ 1.34
HOXD3-204ENST00000459979 ECE2O60344 883 aa23.43■■□□□ 1.34
HOXD3-204ENST00000459979 TBC1D10BQ4KMP7 808 aaPredicted RBP23.43■■□□□ 1.34
HOXD3-204ENST00000459979 SLC4A10Q6U841 1118 aa23.43■■□□□ 1.34
HOXD3-204ENST00000459979 BSDC1Q9NW68 430 aaPredicted RBP23.43■■□□□ 1.34
HOXD3-204ENST00000459979 MAP2K2P36507 400 aa23.42■■□□□ 1.34
HOXD3-204ENST00000459979 FOXO4P98177 505 aa23.42■■□□□ 1.34
HOXD3-204ENST00000459979 HNRNPUQ00839 825 aaKnown RBP eCLIP23.42■■□□□ 1.34
HOXD3-204ENST00000459979 SMC4Q9NTJ3 1288 aa23.42■■□□□ 1.34
HOXD3-204ENST00000459979 UTYO14607 1347 aa23.41■■□□□ 1.34
HOXD3-204ENST00000459979 RBM26Q5T8P6 1007 aaKnown RBP23.41■■□□□ 1.34
HOXD3-204ENST00000459979 TBC1D16Q8TBP0 767 aa23.41■■□□□ 1.34
HOXD3-204ENST00000459979 DPF2Q92785 391 aa23.41■■□□□ 1.34
HOXD3-204ENST00000459979 C9orf78Q9NZ63 289 aaPredicted RBP23.41■■□□□ 1.34
HOXD3-204ENST00000459979 SPEF2Q9C093 1822 aa23.4■■□□□ 1.34
HOXD3-204ENST00000459979 EYA3Q99504 573 aa23.4■■□□□ 1.34
HOXD3-204ENST00000459979 ITGA6P23229 1130 aa23.39■■□□□ 1.33
HOXD3-204ENST00000459979 RARSP54136 660 aaKnown RBP23.39■■□□□ 1.33
HOXD3-204ENST00000459979 ZIC5Q96T25 663 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms