RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 DCAF8Q5TAQ9 597 aa10.04□□□□□ -0.8
VPS50-208ENST00000458707 LEO1Q8WVC0 666 aaPredicted RBP10.04□□□□□ -0.8
VPS50-208ENST00000458707 FEZ1Q99689 392 aa10.04□□□□□ -0.8
VPS50-208ENST00000458707 DACT1Q9NYF0 836 aa10.04□□□□□ -0.8
VPS50-208ENST00000458707 TAOK2Q9UL54 1235 aa10.04□□□□□ -0.8
VPS50-208ENST00000458707 TBX22Q9Y458 520 aa10.04□□□□□ -0.8
VPS50-208ENST00000458707 C5P01031 1676 aa10.04□□□□□ -0.8
VPS50-208ENST00000458707 SCN11AQ9UI33 1791 aa10.04□□□□□ -0.8
VPS50-208ENST00000458707 RPS6KB1P23443 525 aa10.04□□□□□ -0.8
VPS50-208ENST00000458707 CBX1P83916 185 aa10.04□□□□□ -0.8
VPS50-208ENST00000458707 NMIQ13287 307 aaPredicted RBP10.04□□□□□ -0.8
VPS50-208ENST00000458707 TOB2Q14106 344 aaPredicted RBP10.04□□□□□ -0.8
VPS50-208ENST00000458707 RNF20Q5VTR2 975 aa10.04□□□□□ -0.8
VPS50-208ENST00000458707 BLOC1S2Q6QNY1 142 aa10.04□□□□□ -0.8
VPS50-208ENST00000458707 CCDC186Q7Z3E2 898 aa10.04□□□□□ -0.8
VPS50-208ENST00000458707 FAM227BQ96M60 508 aa10.04□□□□□ -0.8
VPS50-208ENST00000458707 HMG20BQ9P0W2 317 aa10.04□□□□□ -0.8
VPS50-208ENST00000458707 DBF4Q9UBU7 674 aaPredicted RBP10.04□□□□□ -0.8
VPS50-208ENST00000458707 SNPHO15079 494 aa10.03□□□□□ -0.8
VPS50-208ENST00000458707 IRX3P78415 501 aaPredicted RBP10.03□□□□□ -0.8
VPS50-208ENST00000458707 NCBP1Q09161 790 aaKnown RBP10.03□□□□□ -0.8
VPS50-208ENST00000458707 CAMK4Q16566 473 aa10.03□□□□□ -0.8
VPS50-208ENST00000458707 ZSCAN25Q6NSZ9 544 aa10.03□□□□□ -0.8
VPS50-208ENST00000458707 AACSQ86V21 672 aa10.03□□□□□ -0.8
VPS50-208ENST00000458707 SPATA32Q96LK8 384 aa10.03□□□□□ -0.8
VPS50-208ENST00000458707 PAXBP1Q9Y5B6 917 aa10.03□□□□□ -0.8
VPS50-208ENST00000458707 SASH1O94885 1247 aa10.02□□□□□ -0.8
VPS50-208ENST00000458707 COL9A3Q14050 684 aaPredicted RBP10.02□□□□□ -0.8
VPS50-208ENST00000458707 GRIPAP1Q4V328 841 aa10.02□□□□□ -0.8
VPS50-208ENST00000458707 USPL1Q5W0Q7 1092 aa10.02□□□□□ -0.8
VPS50-208ENST00000458707 FAM173BQ6P4H8 233 aa10.02□□□□□ -0.8
VPS50-208ENST00000458707 SARM1Q6SZW1 724 aa10.02□□□□□ -0.8
VPS50-208ENST00000458707 KSR2Q6VAB6 950 aa10.02□□□□□ -0.8
VPS50-208ENST00000458707 FERMT3Q86UX7 667 aa10.02□□□□□ -0.8
VPS50-208ENST00000458707 LGR6Q9HBX8 967 aa10.02□□□□□ -0.8
VPS50-208ENST00000458707 DDX60Q8IY21 1712 aaKnown RBP10.02□□□□□ -0.81
VPS50-208ENST00000458707 A0A0D9SFI3 127 aa10.02□□□□□ -0.81
VPS50-208ENST00000458707 GOLGA6L4A6NEF3 574 aa10.02□□□□□ -0.81
VPS50-208ENST00000458707 KCNQ3O43525 872 aa10.02□□□□□ -0.81
VPS50-208ENST00000458707 DTNBO60941 627 aa10.02□□□□□ -0.81
VPS50-208ENST00000458707 PYGBP11216 843 aa10.02□□□□□ -0.81
VPS50-208ENST00000458707 KCNJ4P48050 445 aa10.02□□□□□ -0.81
VPS50-208ENST00000458707 LRMPQ12912 555 aa10.02□□□□□ -0.81
VPS50-208ENST00000458707 LARP1Q6PKG0 1096 aaKnown RBP10.02□□□□□ -0.81
VPS50-208ENST00000458707 CKAP2LQ8IYA6 745 aa10.02□□□□□ -0.81
VPS50-208ENST00000458707 IP6K1Q92551 441 aa10.02□□□□□ -0.81
VPS50-208ENST00000458707 EAF2Q96CJ1 260 aaPredicted RBP10.02□□□□□ -0.81
VPS50-208ENST00000458707 PGBD1Q96JS3 809 aa10.02□□□□□ -0.81
VPS50-208ENST00000458707 SLC26A8Q96RN1 970 aa10.02□□□□□ -0.81
VPS50-208ENST00000458707 TRIM5Q9C035 493 aa10.02□□□□□ -0.81
VPS50-208ENST00000458707 C9orf78Q9NZ63 289 aaPredicted RBP10.02□□□□□ -0.81
VPS50-208ENST00000458707 PA2G4Q9UQ80 394 aaKnown RBP10.02□□□□□ -0.81
VPS50-208ENST00000458707 MAP3K2Q9Y2U5 619 aa10.02□□□□□ -0.81
VPS50-208ENST00000458707 RFX7Q2KHR2 1363 aa10.01□□□□□ -0.81
VPS50-208ENST00000458707 NR1I2O75469 434 aa10.01□□□□□ -0.81
VPS50-208ENST00000458707 U2AF2P26368 475 aaKnown RBP eCLIP10.01□□□□□ -0.814e-7■■■□□ 17.3
VPS50-208ENST00000458707 ZNF165P49910 485 aa10.01□□□□□ -0.81
VPS50-208ENST00000458707 RESTQ13127 1097 aa10.01□□□□□ -0.81
VPS50-208ENST00000458707 DDX54Q8TDD1 881 aaKnown RBP10.01□□□□□ -0.81
VPS50-208ENST00000458707 KAZALD1Q96I82 304 aa10.01□□□□□ -0.81
VPS50-208ENST00000458707 NRBP1Q9UHY1 535 aa10.01□□□□□ -0.81
VPS50-208ENST00000458707 RGPD5Q99666 1765 aa10□□□□□ -0.81
VPS50-208ENST00000458707 ARFGEF2Q9Y6D5 1785 aa10□□□□□ -0.81
VPS50-208ENST00000458707 BTBD11A6QL63 1104 aa10□□□□□ -0.81
VPS50-208ENST00000458707 NEMFO60524 1076 aa10□□□□□ -0.81
VPS50-208ENST00000458707 ANXA1P04083 346 aa10□□□□□ -0.81
VPS50-208ENST00000458707 RBM6P78332 1123 aaKnown RBP10□□□□□ -0.81
VPS50-208ENST00000458707 KRT32Q14532 448 aa10□□□□□ -0.81
VPS50-208ENST00000458707 IQCB1Q15051 598 aa10□□□□□ -0.81
VPS50-208ENST00000458707 AKAP4Q5JQC9 854 aa10□□□□□ -0.81
VPS50-208ENST00000458707 AXDND1Q5T1B0 1012 aaPredicted RBP10□□□□□ -0.81
VPS50-208ENST00000458707 USHBP1Q8N6Y0 703 aa10□□□□□ -0.81
VPS50-208ENST00000458707 ABTB2Q8N961 1025 aa10□□□□□ -0.81
VPS50-208ENST00000458707 LINS1Q8NG48 757 aa10□□□□□ -0.81
VPS50-208ENST00000458707 CACTINQ8WUQ7 758 aaKnown RBP10□□□□□ -0.81
VPS50-208ENST00000458707 GTF3C6Q969F1 213 aa10□□□□□ -0.81
VPS50-208ENST00000458707 LTV1Q96GA3 475 aaPredicted RBP10□□□□□ -0.81
VPS50-208ENST00000458707 MRFAP1L1Q96HT8 127 aa10□□□□□ -0.81
VPS50-208ENST00000458707 ZSCAN16Q9H4T2 348 aaPredicted RBP10□□□□□ -0.81
VPS50-208ENST00000458707 OGFRQ9NZT2 677 aa10□□□□□ -0.81
VPS50-208ENST00000458707 TFIP11Q9UBB9 837 aaKnown RBP10□□□□□ -0.81
VPS50-208ENST00000458707 CTNNA3Q9UI47 895 aa10□□□□□ -0.81
VPS50-208ENST00000458707 KCNG1Q9UIX4 513 aa10□□□□□ -0.81
VPS50-208ENST00000458707 ZHX1Q9UKY1 873 aaPredicted RBP10□□□□□ -0.81
VPS50-208ENST00000458707 CHMP3Q9Y3E7 222 aa10□□□□□ -0.81
VPS50-208ENST00000458707 EID1Q9Y6B2 187 aa10□□□□□ -0.81
VPS50-208ENST00000458707 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10□□□□□ -0.81
VPS50-208ENST00000458707 GRM8O00222 908 aa10□□□□□ -0.81
VPS50-208ENST00000458707 TAF5LO75529 589 aa10□□□□□ -0.81
VPS50-208ENST00000458707 TNNT1P13805 278 aa10□□□□□ -0.81
VPS50-208ENST00000458707 TEFQ10587 303 aa10□□□□□ -0.81
VPS50-208ENST00000458707 G3BP1Q13283 466 aaKnown RBP eCLIP10□□□□□ -0.81
VPS50-208ENST00000458707 NBPF6Q5VWK0 638 aa10□□□□□ -0.81
VPS50-208ENST00000458707 DRC7Q8IY82 874 aa10□□□□□ -0.81
VPS50-208ENST00000458707 CNPY4Q8N129 248 aa10□□□□□ -0.81
VPS50-208ENST00000458707 ZNF622Q969S3 477 aaKnown RBP eCLIP10□□□□□ -0.81
VPS50-208ENST00000458707 NBPF4Q96M43 638 aa10□□□□□ -0.81
VPS50-208ENST00000458707 C16orf45Q96MC5 204 aaPredicted RBP10□□□□□ -0.81
VPS50-208ENST00000458707 CGNQ9P2M7 1197 aaKnown RBP10□□□□□ -0.81
VPS50-208ENST00000458707 TAF6LQ9Y6J9 622 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms