RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 POLLQ9UGP5 575 aa10.29□□□□□ -0.76
LIMCH1-204ENST00000446625 PSME4Q14997 1843 aa10.28□□□□□ -0.76
LIMCH1-204ENST00000446625 COL4A1P02462 1669 aa10.28□□□□□ -0.76
LIMCH1-204ENST00000446625 UBE2Q2LH0YL09 131 aa10.28□□□□□ -0.76
LIMCH1-204ENST00000446625 FKBP1BP68106 108 aa10.28□□□□□ -0.76
LIMCH1-204ENST00000446625 GPSM2P81274 684 aa10.28□□□□□ -0.76
LIMCH1-204ENST00000446625 SCARF1Q14162 830 aa10.28□□□□□ -0.76
LIMCH1-204ENST00000446625 CELF1Q92879 486 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-204ENST00000446625 ZNF428Q96B54 188 aa10.28□□□□□ -0.76
LIMCH1-204ENST00000446625 PCGF6Q9BYE7 350 aa10.28□□□□□ -0.76
LIMCH1-204ENST00000446625 TRMT112Q9UI30 125 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-204ENST00000446625 SH3TC1Q8TE82 1336 aa10.28□□□□□ -0.76
LIMCH1-204ENST00000446625 VIL1P09327 827 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-204ENST00000446625 EIF2S2P20042 333 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-204ENST00000446625 TM4SF4P48230 202 aa10.27□□□□□ -0.77
LIMCH1-204ENST00000446625 FXR1P51114 621 aaKnown RBP eCLIP10.27□□□□□ -0.77
LIMCH1-204ENST00000446625 NOM1Q5C9Z4 860 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-204ENST00000446625 R3HDMLQ9H3Y0 253 aa10.27□□□□□ -0.77
LIMCH1-204ENST00000446625 SCAF8Q9UPN6 1271 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-204ENST00000446625 HTTP42858 3142 aa10.27□□□□□ -0.77
LIMCH1-204ENST00000446625 RBBP6Q7Z6E9 1792 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-204ENST00000446625 CENPFP49454 3210 aa10.26□□□□□ -0.77
LIMCH1-204ENST00000446625 POTEFA5A3E0 1075 aa10.26□□□□□ -0.77
LIMCH1-204ENST00000446625 FKTNO75072 461 aa10.26□□□□□ -0.77
LIMCH1-204ENST00000446625 ZNF280AP59817 542 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-204ENST00000446625 TRIM26Q12899 539 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-204ENST00000446625 MKRN3Q13064 507 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-204ENST00000446625 TCIRG1Q13488 830 aa10.26□□□□□ -0.77
LIMCH1-204ENST00000446625 HSP90AB3PQ58FF7 597 aa10.26□□□□□ -0.77
LIMCH1-204ENST00000446625 PRAMEF18Q5VWM3 479 aa10.26□□□□□ -0.77
LIMCH1-204ENST00000446625 COPS6Q7L5N1 327 aa10.26□□□□□ -0.77
LIMCH1-204ENST00000446625 TBC1D16Q8TBP0 767 aa10.26□□□□□ -0.77
LIMCH1-204ENST00000446625 EYA3Q99504 573 aa10.26□□□□□ -0.77
LIMCH1-204ENST00000446625 PPP2R1AP30153 589 aa10.25□□□□□ -0.77
LIMCH1-204ENST00000446625 AIMP1Q12904 312 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-204ENST00000446625 XAGE3Q8WTP9 111 aa10.25□□□□□ -0.77
LIMCH1-204ENST00000446625 CUL9Q8IWT3 2517 aa10.25□□□□□ -0.77
LIMCH1-204ENST00000446625 TTLL12Q14166 644 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-204ENST00000446625 SF3B3Q15393 1217 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-204ENST00000446625 NCBP3Q53F19 620 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-204ENST00000446625 AGBL3Q8NEM8 1001 aa10.24□□□□□ -0.77
LIMCH1-204ENST00000446625 CFHR5Q9BXR6 569 aa10.24□□□□□ -0.77
LIMCH1-204ENST00000446625 ZC3H12CQ9C0D7 883 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-204ENST00000446625 PITPNM2Q9BZ72 1349 aa10.24□□□□□ -0.77
LIMCH1-204ENST00000446625 USP17L8P0C7I0 530 aa10.23□□□□□ -0.77
LIMCH1-204ENST00000446625 RSBN1LQ6PCB5 846 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-204ENST00000446625 NECTIN2Q92692 538 aa10.23□□□□□ -0.77
LIMCH1-204ENST00000446625 FAM89AQ96GI7 184 aa10.23□□□□□ -0.77
LIMCH1-204ENST00000446625 GMLQ99445 158 aa10.23□□□□□ -0.77
LIMCH1-204ENST00000446625 MYOZ2Q9NPC6 264 aa10.23□□□□□ -0.77
LIMCH1-204ENST00000446625 TSPYL4Q9UJ04 414 aa10.23□□□□□ -0.77
LIMCH1-204ENST00000446625 ZNF609O15014 1411 aa10.23□□□□□ -0.77
LIMCH1-204ENST00000446625 BRCA2P51587 3418 aa10.23□□□□□ -0.77
LIMCH1-204ENST00000446625 SZT2Q5T011 3432 aa10.23□□□□□ -0.77
LIMCH1-204ENST00000446625 G3V3G9 751 aa10.22□□□□□ -0.77
LIMCH1-204ENST00000446625 UFL1O94874 794 aa10.22□□□□□ -0.77
LIMCH1-204ENST00000446625 NEFMP07197 916 aa10.22□□□□□ -0.77
LIMCH1-204ENST00000446625 RPS8P62241 208 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-204ENST00000446625 PTPN12Q05209 780 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-204ENST00000446625 SREBF2Q12772 1141 aa10.22□□□□□ -0.77
LIMCH1-204ENST00000446625 NFE2L2Q16236 605 aa10.22□□□□□ -0.77
LIMCH1-204ENST00000446625 DCAF8Q5TAQ9 597 aa10.22□□□□□ -0.77
LIMCH1-204ENST00000446625 INTS3Q68E01 1043 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-204ENST00000446625 TRIM17Q9Y577 477 aa10.22□□□□□ -0.77
LIMCH1-204ENST00000446625 EN2P19622 333 aaPredicted RBP10.21□□□□□ -0.77
LIMCH1-204ENST00000446625 NBPF9Q3BBW0 867 aa10.21□□□□□ -0.77
LIMCH1-204ENST00000446625 RTL5Q5HYW3 569 aaPredicted RBP10.21□□□□□ -0.77
LIMCH1-204ENST00000446625 OTOP1Q7RTM1 612 aa10.21□□□□□ -0.77
LIMCH1-204ENST00000446625 PLEKHF1Q96S99 279 aa10.21□□□□□ -0.77
LIMCH1-204ENST00000446625 PODXL2Q9NZ53 605 aa10.21□□□□□ -0.77
LIMCH1-204ENST00000446625 COLQQ9Y215 455 aaPredicted RBP10.21□□□□□ -0.77
LIMCH1-204ENST00000446625 ATP5J2-PTCD1G3V325 749 aa10.2□□□□□ -0.78
LIMCH1-204ENST00000446625 PRKG1Q13976 671 aa10.2□□□□□ -0.78
LIMCH1-204ENST00000446625 SPRYD7Q5W111 196 aa10.2□□□□□ -0.78
LIMCH1-204ENST00000446625 ISCA1Q9BUE6 129 aa10.2□□□□□ -0.78
LIMCH1-204ENST00000446625 SEC31BQ9NQW1 1179 aa10.2□□□□□ -0.78
LIMCH1-204ENST00000446625 ANKIB1Q9P2G1 1089 aa10.2□□□□□ -0.78
LIMCH1-204ENST00000446625 GGA1Q9UJY5 639 aa10.2□□□□□ -0.78
LIMCH1-204ENST00000446625 ZNF646O15015 1829 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-204ENST00000446625 USP17L3A6NCW0 530 aa10.19□□□□□ -0.78
LIMCH1-204ENST00000446625 USP17L4A6NCW7 530 aa10.19□□□□□ -0.78
LIMCH1-204ENST00000446625 IRS4O14654 1257 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-204ENST00000446625 ALDH1A1P00352 501 aa10.19□□□□□ -0.78
LIMCH1-204ENST00000446625 HOXD11P31277 338 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-204ENST00000446625 NF2P35240 595 aa10.19□□□□□ -0.78
LIMCH1-204ENST00000446625 USP17L1Q7RTZ2 530 aa10.19□□□□□ -0.78
LIMCH1-204ENST00000446625 WNT10BO00744 389 aa10.18□□□□□ -0.78
LIMCH1-204ENST00000446625 LDLRAD1Q5T700 205 aa10.18□□□□□ -0.78
LIMCH1-204ENST00000446625 ARMC9Q7Z3E5 817 aa10.18□□□□□ -0.78
LIMCH1-204ENST00000446625 IFNL1Q8IU54 200 aa10.18□□□□□ -0.78
LIMCH1-204ENST00000446625 PLBD2Q8NHP8 589 aa10.18□□□□□ -0.78
LIMCH1-204ENST00000446625 ARMC5Q96C12 935 aa10.18□□□□□ -0.78
LIMCH1-204ENST00000446625 MXD3Q9BW11 206 aa10.18□□□□□ -0.78
LIMCH1-204ENST00000446625 PTPN22Q9Y2R2 807 aa10.18□□□□□ -0.78
LIMCH1-204ENST00000446625 LAMB1P07942 1786 aa10.18□□□□□ -0.78
LIMCH1-204ENST00000446625 IGF2BP3O00425 579 aaKnown RBP eCLIP10.17□□□□□ -0.78
LIMCH1-204ENST00000446625 KRT24Q2M2I5 525 aa10.17□□□□□ -0.78
LIMCH1-204ENST00000446625 ANKRD13DQ6ZTN6 518 aa10.17□□□□□ -0.78
LIMCH1-204ENST00000446625 PODNQ7Z5L7 613 aa10.17□□□□□ -0.78
LIMCH1-204ENST00000446625 CD99L2Q8TCZ2 262 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms