RNA–Protein interactions for RNA: ENST00000444440.1

SF3A1-203, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 777 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-203ENST00000444440 PODXL2Q9NZ53 605 aa13.9□□□□□ -0.18
SF3A1-203ENST00000444440 GPRC5DQ9NZD1 345 aa13.9□□□□□ -0.18
SF3A1-203ENST00000444440 CLEC11AQ9Y240 323 aa13.9□□□□□ -0.18
SF3A1-203ENST00000444440 PSMD14O00487 310 aa13.89□□□□□ -0.19
SF3A1-203ENST00000444440 ECE2O60344 883 aa13.89□□□□□ -0.19
SF3A1-203ENST00000444440 UFL1O94874 794 aa13.89□□□□□ -0.19
SF3A1-203ENST00000444440 LMOD1P29536 600 aaPredicted RBP13.89□□□□□ -0.19
SF3A1-203ENST00000444440 BEND3Q5T5X7 828 aa13.89□□□□□ -0.19
SF3A1-203ENST00000444440 LINS1Q8NG48 757 aa13.89□□□□□ -0.19
SF3A1-203ENST00000444440 CDCA7LQ96GN5 454 aa13.89□□□□□ -0.19
SF3A1-203ENST00000444440 PLA2G12BQ9BX93 195 aa13.89□□□□□ -0.19
SF3A1-203ENST00000444440 ZBTB12Q9Y330 459 aaPredicted RBP13.89□□□□□ -0.19
SF3A1-203ENST00000444440 HSP90B1P14625 803 aaKnown RBP13.88□□□□□ -0.19
SF3A1-203ENST00000444440 HIRAP54198 1017 aaPredicted RBP13.88□□□□□ -0.19
SF3A1-203ENST00000444440 FAM161AQ3B820 660 aa13.88□□□□□ -0.19
SF3A1-203ENST00000444440 PNMA8AQ86V59 439 aaPredicted RBP13.88□□□□□ -0.19
SF3A1-203ENST00000444440 ANKRD18AQ8IVF6 992 aa13.88□□□□□ -0.19
SF3A1-203ENST00000444440 CNTROBQ8N137 903 aa13.88□□□□□ -0.19
SF3A1-203ENST00000444440 TRPM4Q8TD43 1214 aa13.88□□□□□ -0.19
SF3A1-203ENST00000444440 ECM29Q5VYK3 1845 aa13.87□□□□□ -0.19
SF3A1-203ENST00000444440 THSD7BQ9C0I4 1608 aa13.87□□□□□ -0.19
SF3A1-203ENST00000444440 EGFRP00533 1210 aa13.87□□□□□ -0.19
SF3A1-203ENST00000444440 CSF1RP07333 972 aa13.87□□□□□ -0.19
SF3A1-203ENST00000444440 FOXO4P98177 505 aa13.87□□□□□ -0.19
SF3A1-203ENST00000444440 SLFN5Q08AF3 891 aa13.87□□□□□ -0.19
SF3A1-203ENST00000444440 CREBZFQ9NS37 354 aa13.87□□□□□ -0.19
SF3A1-203ENST00000444440 ANKIB1Q9P2G1 1089 aa13.87□□□□□ -0.19
SF3A1-203ENST00000444440 GGA1Q9UJY5 639 aa13.87□□□□□ -0.19
SF3A1-203ENST00000444440 MINPP1Q9UNW1 487 aa13.87□□□□□ -0.19
SF3A1-203ENST00000444440 TRAF5O00463 557 aa13.86□□□□□ -0.19
SF3A1-203ENST00000444440 ITGA6P23229 1130 aa13.86□□□□□ -0.19
SF3A1-203ENST00000444440 EPHA10Q5JZY3 1008 aa13.86□□□□□ -0.19
SF3A1-203ENST00000444440 USP50Q70EL3 339 aaPredicted RBP13.86□□□□□ -0.19
SF3A1-203ENST00000444440 MRPL50Q8N5N7 158 aaKnown RBP13.86□□□□□ -0.19
SF3A1-203ENST00000444440 ADARB2Q9NS39 739 aaKnown RBP13.86□□□□□ -0.19
SF3A1-203ENST00000444440 MKRN1Q9UHC7 482 aaKnown RBP13.86□□□□□ -0.19
SF3A1-203ENST00000444440 XDHP47989 1333 aa13.86□□□□□ -0.19
SF3A1-203ENST00000444440 CNTNAP1P78357 1384 aa13.85□□□□□ -0.19
SF3A1-203ENST00000444440 TNIP1Q15025 636 aa13.85□□□□□ -0.19
SF3A1-203ENST00000444440 TXNRD3Q86VQ6 643 aa13.85□□□□□ -0.19
SF3A1-203ENST00000444440 MICALL2Q8IY33 904 aa13.85□□□□□ -0.19
SF3A1-203ENST00000444440 CDC5LQ99459 802 aaKnown RBP13.85□□□□□ -0.19
SF3A1-203ENST00000444440 EYA3Q99504 573 aa13.85□□□□□ -0.19
SF3A1-203ENST00000444440 BCL2L13Q9BXK5 485 aa13.85□□□□□ -0.19
SF3A1-203ENST00000444440 BSDC1Q9NW68 430 aaPredicted RBP13.85□□□□□ -0.19
SF3A1-203ENST00000444440 CNOT7Q9UIV1 285 aaKnown RBP13.85□□□□□ -0.19
SF3A1-203ENST00000444440 ARAP2Q8WZ64 1704 aa13.84□□□□□ -0.19
SF3A1-203ENST00000444440 MYH13Q9UKX3 1938 aa13.84□□□□□ -0.19
SF3A1-203ENST00000444440 E9PSI1 815 aa13.84□□□□□ -0.19
SF3A1-203ENST00000444440 CCER2I3L3R5 266 aa13.84□□□□□ -0.19
SF3A1-203ENST00000444440 KLRK1P26718 216 aa13.84□□□□□ -0.19
SF3A1-203ENST00000444440 DLK2Q6UY11 383 aa13.84□□□□□ -0.19
SF3A1-203ENST00000444440 SAMD7Q7Z3H4 446 aa13.84□□□□□ -0.19
SF3A1-203ENST00000444440 TRMT2AQ8IZ69 625 aaKnown RBP13.84□□□□□ -0.19
SF3A1-203ENST00000444440 ZC3H12CQ9C0D7 883 aaKnown RBP13.84□□□□□ -0.19
SF3A1-203ENST00000444440 MED23Q9ULK4 1368 aa13.83□□□□□ -0.19
SF3A1-203ENST00000444440 TMEM88BA6NKF7 163 aa13.83□□□□□ -0.2
SF3A1-203ENST00000444440 SNAP23O00161 211 aa13.83□□□□□ -0.2
SF3A1-203ENST00000444440 ATP2B4P23634 1241 aa13.83□□□□□ -0.2
SF3A1-203ENST00000444440 CCT4P50991 539 aaKnown RBP13.83□□□□□ -0.2
SF3A1-203ENST00000444440 CST9Q5W186 159 aa13.83□□□□□ -0.2
SF3A1-203ENST00000444440 SLC4A10Q6U841 1118 aa13.83□□□□□ -0.2
SF3A1-203ENST00000444440 SSH1Q8WYL5 1049 aa13.83□□□□□ -0.2
SF3A1-203ENST00000444440 KAZALD1Q96I82 304 aa13.83□□□□□ -0.2
SF3A1-203ENST00000444440 GLIS2Q9BZE0 524 aaPredicted RBP13.83□□□□□ -0.2
SF3A1-203ENST00000444440 PGAP2Q9UHJ9 254 aa13.83□□□□□ -0.2
SF3A1-203ENST00000444440 ZNF609O15014 1411 aa13.82□□□□□ -0.2
SF3A1-203ENST00000444440 GRM8O00222 908 aa13.82□□□□□ -0.2
SF3A1-203ENST00000444440 VIL1P09327 827 aaKnown RBP13.82□□□□□ -0.2
SF3A1-203ENST00000444440 DPF2Q92785 391 aa13.82□□□□□ -0.2
SF3A1-203ENST00000444440 ZNF594Q96JF6 807 aaPredicted RBP13.82□□□□□ -0.2
SF3A1-203ENST00000444440 ASTN2O75129 1339 aaPredicted RBP13.82□□□□□ -0.2
SF3A1-203ENST00000444440 IRS2Q9Y4H2 1338 aa13.82□□□□□ -0.2
SF3A1-203ENST00000444440 NBPF7P0C2Y1 421 aaPredicted RBP13.81□□□□□ -0.2
SF3A1-203ENST00000444440 IGHMBP2P38935 993 aaKnown RBP13.81□□□□□ -0.2
SF3A1-203ENST00000444440 TBC1D10BQ4KMP7 808 aaPredicted RBP13.81□□□□□ -0.2
SF3A1-203ENST00000444440 LMBR1LQ6UX01 489 aa13.81□□□□□ -0.2
SF3A1-203ENST00000444440 SUCLG2Q96I99 432 aa13.81□□□□□ -0.2
SF3A1-203ENST00000444440 MXD3Q9BW11 206 aa13.81□□□□□ -0.2
SF3A1-203ENST00000444440 TAF5LO75529 589 aa13.8□□□□□ -0.2
SF3A1-203ENST00000444440 ALDH1L1O75891 902 aa13.8□□□□□ -0.2
SF3A1-203ENST00000444440 HSPA1AP0DMV8 641 aaKnown RBP13.8□□□□□ -0.2
SF3A1-203ENST00000444440 HSPA1BP0DMV9 641 aaKnown RBP13.8□□□□□ -0.2
SF3A1-203ENST00000444440 VEGFBP49765 207 aa13.8□□□□□ -0.2
SF3A1-203ENST00000444440 CHRNDQ07001 517 aa13.8□□□□□ -0.2
SF3A1-203ENST00000444440 HELBQ8NG08 1087 aaPredicted RBP13.8□□□□□ -0.2
SF3A1-203ENST00000444440 GMLQ99445 158 aa13.8□□□□□ -0.2
SF3A1-203ENST00000444440 SRCIN1Q9C0H9 1055 aa13.8□□□□□ -0.2
SF3A1-203ENST00000444440 ANKRD18BA2A2Z9 1011 aa13.79□□□□□ -0.2
SF3A1-203ENST00000444440 RASSF10A6NK89 507 aa13.79□□□□□ -0.2
SF3A1-203ENST00000444440 H7C1D1 291 aa13.79□□□□□ -0.2
SF3A1-203ENST00000444440 RPS12P25398 132 aaKnown RBP13.79□□□□□ -0.2
SF3A1-203ENST00000444440 RBM26Q5T8P6 1007 aaKnown RBP13.79□□□□□ -0.2
SF3A1-203ENST00000444440 RSBN1LQ6PCB5 846 aaPredicted RBP13.79□□□□□ -0.2
SF3A1-203ENST00000444440 CHMP3Q9Y3E7 222 aa13.79□□□□□ -0.2
SF3A1-203ENST00000444440 UTYO14607 1347 aa13.79□□□□□ -0.2
SF3A1-203ENST00000444440 G3V3G9 751 aa13.78□□□□□ -0.2
SF3A1-203ENST00000444440 DCAF8Q5TAQ9 597 aa13.78□□□□□ -0.2
SF3A1-203ENST00000444440 MIER1Q8N108 512 aa13.78□□□□□ -0.2
SF3A1-203ENST00000444440 MPHOSPH8Q99549 860 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms