RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 RIPOR2Q9Y4F9 1068 aa19.56■□□□□ 0.72
USP40-206ENST00000443711 IL15P40933 162 aaPredicted RBP19.55■□□□□ 0.72
USP40-206ENST00000443711 CC2D2BQ6DHV5 1058 aa19.55■□□□□ 0.72
USP40-206ENST00000443711 ATG9AQ7Z3C6 839 aa19.55■□□□□ 0.72
USP40-206ENST00000443711 C7orf43Q8WVR3 580 aa19.55■□□□□ 0.72
USP40-206ENST00000443711 PPP4R2Q9NY27 417 aa19.55■□□□□ 0.72
USP40-206ENST00000443711 MINPP1Q9UNW1 487 aa19.55■□□□□ 0.72
USP40-206ENST00000443711 MROH5Q6ZUA9 1318 aa19.54■□□□□ 0.72
USP40-206ENST00000443711 IGHDP01880 384 aa19.54■□□□□ 0.72
USP40-206ENST00000443711 ERC1Q8IUD2 1116 aa19.54■□□□□ 0.72
USP40-206ENST00000443711 ANKRD2Q9GZV1 360 aa19.54■□□□□ 0.72
USP40-206ENST00000443711 ZNF219Q9P2Y4 722 aaPredicted RBP19.54■□□□□ 0.72
USP40-206ENST00000443711 WWC3Q9ULE0 1092 aa19.54■□□□□ 0.72
USP40-206ENST00000443711 BCS1LQ9Y276 419 aa19.54■□□□□ 0.72
USP40-206ENST00000443711 EXOC6BQ9Y2D4 811 aa19.54■□□□□ 0.72
USP40-206ENST00000443711 RAB11FIP3O75154 756 aa19.53■□□□□ 0.72
USP40-206ENST00000443711 SOGA3Q5TF21 947 aa19.53■□□□□ 0.72
USP40-206ENST00000443711 GCC1Q96CN9 775 aa19.53■□□□□ 0.72
USP40-206ENST00000443711 CCDC136Q96JN2 1154 aa19.53■□□□□ 0.72
USP40-206ENST00000443711 CEP126Q9P2H0 1117 aa19.53■□□□□ 0.72
USP40-206ENST00000443711 ARFGEF1Q9Y6D6 1849 aa19.53■□□□□ 0.72
USP40-206ENST00000443711 LRRC37AA6NMS7 1700 aa19.52■□□□□ 0.72
USP40-206ENST00000443711 C21orf2O43822 256 aa19.52■□□□□ 0.72
USP40-206ENST00000443711 CHRNDQ07001 517 aa19.52■□□□□ 0.72
USP40-206ENST00000443711 GRIPAP1Q4V328 841 aa19.52■□□□□ 0.72
USP40-206ENST00000443711 METTL24Q5JXM2 366 aa19.52■□□□□ 0.72
USP40-206ENST00000443711 XDHP47989 1333 aa19.51■□□□□ 0.71
USP40-206ENST00000443711 SASH1O94885 1247 aa19.5■□□□□ 0.71
USP40-206ENST00000443711 GPSM2P81274 684 aa19.5■□□□□ 0.71
USP40-206ENST00000443711 CCDC93Q567U6 631 aa19.5■□□□□ 0.71
USP40-206ENST00000443711 MPNDQ8N594 471 aa19.5■□□□□ 0.71
USP40-206ENST00000443711 HELBQ8NG08 1087 aaPredicted RBP19.5■□□□□ 0.71
USP40-206ENST00000443711 KIF1BPQ96EK5 621 aa19.5■□□□□ 0.71
USP40-206ENST00000443711 ANKIB1Q9P2G1 1089 aa19.5■□□□□ 0.71
USP40-206ENST00000443711 NSFL1CQ9UNZ2 370 aaKnown RBP19.5■□□□□ 0.71
USP40-206ENST00000443711 APBB1O00213 710 aa19.49■□□□□ 0.71
USP40-206ENST00000443711 PDE8BO95263 885 aa19.49■□□□□ 0.71
USP40-206ENST00000443711 TFCP2Q12800 502 aa19.49■□□□□ 0.71
USP40-206ENST00000443711 OLFM4Q6UX06 510 aa19.49■□□□□ 0.71
USP40-206ENST00000443711 SMC5Q8IY18 1101 aa19.49■□□□□ 0.71
USP40-206ENST00000443711 RTKN2Q8IZC4 609 aa19.49■□□□□ 0.71
USP40-206ENST00000443711 RHPN1Q8TCX5 695 aa19.49■□□□□ 0.71
USP40-206ENST00000443711 PODXL2Q9NZ53 605 aa19.49■□□□□ 0.71
USP40-206ENST00000443711 A0A1B0GUL6 1792 aa19.49■□□□□ 0.71
USP40-206ENST00000443711 TAF5LO75529 589 aa19.48■□□□□ 0.71
USP40-206ENST00000443711 ATP2B4P23634 1241 aa19.48■□□□□ 0.71
USP40-206ENST00000443711 DPP8Q6V1X1 898 aaPredicted RBP19.48■□□□□ 0.71
USP40-206ENST00000443711 PELP1Q8IZL8 1130 aaKnown RBP19.48■□□□□ 0.71
USP40-206ENST00000443711 VGLL2Q8N8G2 317 aa19.48■□□□□ 0.71
USP40-206ENST00000443711 LRRCC1Q9C099 1032 aa19.48■□□□□ 0.71
USP40-206ENST00000443711 AKAP2Q9Y2D5 859 aa19.48■□□□□ 0.71
USP40-206ENST00000443711 LEMD3Q9Y2U8 911 aa19.48■□□□□ 0.71
USP40-206ENST00000443711 SLC51AQ86UW1 340 aa19.47■□□□□ 0.71
USP40-206ENST00000443711 GPR108Q9NPR9 543 aa19.47■□□□□ 0.71
USP40-206ENST00000443711 ZBTB47Q9UFB7 747 aaPredicted RBP19.47■□□□□ 0.71
USP40-206ENST00000443711 GGA1Q9UJY5 639 aa19.47■□□□□ 0.71
USP40-206ENST00000443711 KCNJ4P48050 445 aa19.46■□□□□ 0.71
USP40-206ENST00000443711 UBE4AQ14139 1066 aa19.46■□□□□ 0.71
USP40-206ENST00000443711 B4GALNT3Q6L9W6 998 aa19.46■□□□□ 0.71
USP40-206ENST00000443711 SUPT20HQ8NEM7 779 aa19.46■□□□□ 0.71
USP40-206ENST00000443711 C6orf229H3BNL8 230 aa19.45■□□□□ 0.7
USP40-206ENST00000443711 UFL1O94874 794 aa19.45■□□□□ 0.7
USP40-206ENST00000443711 PUM3Q15397 648 aaKnown RBP19.45■□□□□ 0.7
USP40-206ENST00000443711 GPR162Q16538 588 aa19.45■□□□□ 0.7
USP40-206ENST00000443711 ATP2B3Q16720 1220 aa19.45■□□□□ 0.7
USP40-206ENST00000443711 ANKRD45Q5TZF3 282 aa19.45■□□□□ 0.7
USP40-206ENST00000443711 CENPQQ7L2Z9 268 aaPredicted RBP19.45■□□□□ 0.7
USP40-206ENST00000443711 CLASRPQ8N2M8 674 aaKnown RBP19.45■□□□□ 0.7
USP40-206ENST00000443711 TBC1D16Q8TBP0 767 aa19.45■□□□□ 0.7
USP40-206ENST00000443711 GTF3C3Q9Y5Q9 886 aa19.45■□□□□ 0.7
USP40-206ENST00000443711 ZNF804BA4D1E1 1349 aa19.45■□□□□ 0.7
USP40-206ENST00000443711 FER1L6Q2WGJ9 1857 aa19.44■□□□□ 0.7
USP40-206ENST00000443711 PSMD1Q99460 953 aa19.44■□□□□ 0.7
USP40-206ENST00000443711 RTFDC1Q9BY42 306 aaPredicted RBP19.44■□□□□ 0.7
USP40-206ENST00000443711 IL1RAPL2Q9NP60 686 aa19.44■□□□□ 0.7
USP40-206ENST00000443711 POLLQ9UGP5 575 aa19.44■□□□□ 0.7
USP40-206ENST00000443711 LTBP1Q14766 1721 aa19.44■□□□□ 0.7
USP40-206ENST00000443711 KDM2BQ8NHM5 1336 aa19.44■□□□□ 0.7
USP40-206ENST00000443711 SNED1Q8TER0 1413 aa19.43■□□□□ 0.7
USP40-206ENST00000443711 SMARCA5O60264 1052 aaPredicted RBP19.43■□□□□ 0.7
USP40-206ENST00000443711 IFIT1P09914 478 aaKnown RBP19.43■□□□□ 0.7
USP40-206ENST00000443711 SLC5A1P13866 664 aa19.43■□□□□ 0.7
USP40-206ENST00000443711 YBX3P16989 372 aaKnown RBP eCLIP19.43■□□□□ 0.7
USP40-206ENST00000443711 FGFR2P21802 821 aa19.43■□□□□ 0.7
USP40-206ENST00000443711 FKBP4Q02790 459 aaKnown RBP eCLIP19.43■□□□□ 0.7
USP40-206ENST00000443711 TNNI3KQ59H18 835 aa19.43■□□□□ 0.7
USP40-206ENST00000443711 ARHGAP27Q6ZUM4 889 aa19.43■□□□□ 0.7
USP40-206ENST00000443711 LPIN2Q92539 896 aa19.43■□□□□ 0.7
USP40-206ENST00000443711 EYA3Q99504 573 aa19.43■□□□□ 0.7
USP40-206ENST00000443711 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.43■□□□□ 0.7
USP40-206ENST00000443711 FPGT-TNNI3KV9GXZ4 949 aa19.43■□□□□ 0.7
USP40-206ENST00000443711 SNAP23O00161 211 aa19.42■□□□□ 0.7
USP40-206ENST00000443711 TIMM10P62072 90 aa19.42■□□□□ 0.7
USP40-206ENST00000443711 NEUROD6Q96NK8 337 aa19.42■□□□□ 0.7
USP40-206ENST00000443711 A0A1B0GUL7 405 aa19.41■□□□□ 0.7
USP40-206ENST00000443711 WTIPA6NIX2 430 aaPredicted RBP19.41■□□□□ 0.7
USP40-206ENST00000443711 GRIN3BO60391 1043 aa19.41■□□□□ 0.7
USP40-206ENST00000443711 NUCB1Q02818 461 aa19.41■□□□□ 0.7
USP40-206ENST00000443711 C15orf52Q6ZUT6 534 aaKnown RBP19.41■□□□□ 0.7
USP40-206ENST00000443711 AACSQ86V21 672 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms