RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 C6orf229H3BNL8 230 aa18.86■□□□□ 0.61
HMGN1-208ENST00000443046 DOK7Q18PE1 504 aa18.86■□□□□ 0.61
HMGN1-208ENST00000443046 KRT24Q2M2I5 525 aa18.86■□□□□ 0.61
HMGN1-208ENST00000443046 KIF4BQ2VIQ3 1234 aa18.86■□□□□ 0.61
HMGN1-208ENST00000443046 RBM26Q5T8P6 1007 aaKnown RBP18.86■□□□□ 0.61
HMGN1-208ENST00000443046 EYA3Q99504 573 aa18.86■□□□□ 0.61
HMGN1-208ENST00000443046 PODXL2Q9NZ53 605 aa18.86■□□□□ 0.61
HMGN1-208ENST00000443046 TRIM28Q13263 835 aaKnown RBP18.85■□□□□ 0.61
HMGN1-208ENST00000443046 ANKRD13DQ6ZTN6 518 aa18.85■□□□□ 0.61
HMGN1-208ENST00000443046 REM2Q8IYK8 340 aaPredicted RBP18.85■□□□□ 0.61
HMGN1-208ENST00000443046 ZNF428Q96B54 188 aa18.85■□□□□ 0.61
HMGN1-208ENST00000443046 CHPF2Q9P2E5 772 aa18.85■□□□□ 0.61
HMGN1-208ENST00000443046 MKI67P46013 3256 aaKnown RBP18.85■□□□□ 0.61
HMGN1-208ENST00000443046 ASTN2O75129 1339 aaPredicted RBP18.84■□□□□ 0.61
HMGN1-208ENST00000443046 SOX10P56693 466 aa18.84■□□□□ 0.61
HMGN1-208ENST00000443046 ZNF280AP59817 542 aaPredicted RBP18.84■□□□□ 0.61
HMGN1-208ENST00000443046 RPS8P62241 208 aaKnown RBP18.84■□□□□ 0.61
HMGN1-208ENST00000443046 LMOD3Q0VAK6 560 aa18.84■□□□□ 0.61
HMGN1-208ENST00000443046 GGA3Q9NZ52 723 aa18.84■□□□□ 0.61
HMGN1-208ENST00000443046 HTTP42858 3142 aa18.83■□□□□ 0.61
HMGN1-208ENST00000443046 CTU1Q7Z7A3 348 aaKnown RBP18.83■□□□□ 0.6
HMGN1-208ENST00000443046 SULF1Q8IWU6 871 aa18.83■□□□□ 0.6
HMGN1-208ENST00000443046 CDCA5Q96FF9 252 aa18.83■□□□□ 0.6
HMGN1-208ENST00000443046 PSME4Q14997 1843 aa18.83■□□□□ 0.6
HMGN1-208ENST00000443046 ATP5J2-PTCD1G3V325 749 aa18.82■□□□□ 0.6
HMGN1-208ENST00000443046 HOXB7P09629 217 aa18.82■□□□□ 0.6
HMGN1-208ENST00000443046 ZC3H12CQ9C0D7 883 aaKnown RBP18.82■□□□□ 0.6
HMGN1-208ENST00000443046 IRS4O14654 1257 aaPredicted RBP18.81■□□□□ 0.6
HMGN1-208ENST00000443046 FKBP1BP68106 108 aa18.81■□□□□ 0.6
HMGN1-208ENST00000443046 RASAL3Q86YV0 1011 aa18.81■□□□□ 0.6
HMGN1-208ENST00000443046 AGBL3Q8NEM8 1001 aa18.81■□□□□ 0.6
HMGN1-208ENST00000443046 GMLQ99445 158 aa18.81■□□□□ 0.6
HMGN1-208ENST00000443046 DBF4Q9UBU7 674 aaPredicted RBP18.81■□□□□ 0.6
HMGN1-208ENST00000443046 CENPFP49454 3210 aa18.8■□□□□ 0.6
HMGN1-208ENST00000443046 SCARF1Q14162 830 aa18.8■□□□□ 0.6
HMGN1-208ENST00000443046 HDGFL1Q5TGJ6 251 aa18.8■□□□□ 0.6
HMGN1-208ENST00000443046 TRIM35Q9UPQ4 493 aa18.8■□□□□ 0.6
HMGN1-208ENST00000443046 PAPPA2Q9BXP8 1791 aa18.79■□□□□ 0.6
HMGN1-208ENST00000443046 ANGEL2Q5VTE6 544 aaKnown RBP18.79■□□□□ 0.6
HMGN1-208ENST00000443046 RSBN1LQ6PCB5 846 aaPredicted RBP18.79■□□□□ 0.6
HMGN1-208ENST00000443046 SEC31BQ9NQW1 1179 aa18.79■□□□□ 0.6
HMGN1-208ENST00000443046 PITPNM2Q9BZ72 1349 aa18.78■□□□□ 0.6
HMGN1-208ENST00000443046 RTL5Q5HYW3 569 aaPredicted RBP18.78■□□□□ 0.6
HMGN1-208ENST00000443046 PRPF38BQ5VTL8 546 aaKnown RBP18.78■□□□□ 0.6
HMGN1-208ENST00000443046 ZBTB38Q8NAP3 1195 aaPredicted RBP18.78■□□□□ 0.6
HMGN1-208ENST00000443046 HYPKQ9NX55 129 aa18.78■□□□□ 0.6
HMGN1-208ENST00000443046 UFL1O94874 794 aa18.77■□□□□ 0.6
HMGN1-208ENST00000443046 GGA1Q9UJY5 639 aa18.77■□□□□ 0.6
HMGN1-208ENST00000443046 HPS5Q9UPZ3 1129 aa18.77■□□□□ 0.6
HMGN1-208ENST00000443046 PKN2Q16513 984 aaKnown RBP18.76■□□□□ 0.59
HMGN1-208ENST00000443046 MYOZ2Q9NPC6 264 aa18.76■□□□□ 0.59
HMGN1-208ENST00000443046 USP17L8P0C7I0 530 aa18.75■□□□□ 0.59
HMGN1-208ENST00000443046 NOM1Q5C9Z4 860 aaKnown RBP18.75■□□□□ 0.59
HMGN1-208ENST00000443046 ANKIB1Q9P2G1 1089 aa18.75■□□□□ 0.59
HMGN1-208ENST00000443046 TM4SF4P48230 202 aa18.74■□□□□ 0.59
HMGN1-208ENST00000443046 NEUROD2Q15784 382 aa18.74■□□□□ 0.59
HMGN1-208ENST00000443046 MOB2Q70IA6 237 aa18.74■□□□□ 0.59
HMGN1-208ENST00000443046 ZNF296Q8WUU4 475 aaPredicted RBP18.74■□□□□ 0.59
HMGN1-208ENST00000443046 BRCA2P51587 3418 aa18.73■□□□□ 0.59
HMGN1-208ENST00000443046 ZNF646O15015 1829 aaPredicted RBP18.73■□□□□ 0.59
HMGN1-208ENST00000443046 HSP90B1P14625 803 aaKnown RBP18.73■□□□□ 0.59
HMGN1-208ENST00000443046 RALBP1Q15311 655 aa18.73■□□□□ 0.59
HMGN1-208ENST00000443046 DUSP27Q5VZP5 1158 aa18.73■□□□□ 0.59
HMGN1-208ENST00000443046 PODNQ7Z5L7 613 aa18.73■□□□□ 0.59
HMGN1-208ENST00000443046 LAS1LQ9Y4W2 734 aaKnown RBP18.73■□□□□ 0.59
HMGN1-208ENST00000443046 USP17L3A6NCW0 530 aa18.72■□□□□ 0.59
HMGN1-208ENST00000443046 USP17L4A6NCW7 530 aa18.72■□□□□ 0.59
HMGN1-208ENST00000443046 G3V3G9 751 aa18.72■□□□□ 0.59
HMGN1-208ENST00000443046 PCCAP05165 728 aaPredicted RBP18.72■□□□□ 0.59
HMGN1-208ENST00000443046 CCDC152Q4G0S7 254 aa18.72■□□□□ 0.59
HMGN1-208ENST00000443046 DCAF8Q5TAQ9 597 aa18.72■□□□□ 0.59
HMGN1-208ENST00000443046 USP17L1Q7RTZ2 530 aa18.72■□□□□ 0.59
HMGN1-208ENST00000443046 CCDC146Q8IYE0 955 aa18.72■□□□□ 0.59
HMGN1-208ENST00000443046 XDHP47989 1333 aa18.72■□□□□ 0.59
HMGN1-208ENST00000443046 UBE2Q2LH0YL09 131 aa18.71■□□□□ 0.59
HMGN1-208ENST00000443046 PDE8AO60658 829 aa18.71■□□□□ 0.59
HMGN1-208ENST00000443046 TBC1D8O95759 1140 aa18.71■□□□□ 0.59
HMGN1-208ENST00000443046 RIC3Q7Z5B4 369 aa18.71■□□□□ 0.59
HMGN1-208ENST00000443046 CCDC191Q8NCU4 936 aa18.71■□□□□ 0.59
HMGN1-208ENST00000443046 RUNDC1Q96C34 613 aa18.71■□□□□ 0.59
HMGN1-208ENST00000443046 CFHR5Q9BXR6 569 aa18.71■□□□□ 0.59
HMGN1-208ENST00000443046 SCAF8Q9UPN6 1271 aaKnown RBP18.71■□□□□ 0.59
HMGN1-208ENST00000443046 ZNF853P0CG23 659 aa18.7■□□□□ 0.58
HMGN1-208ENST00000443046 ATP2B4P23634 1241 aa18.7■□□□□ 0.58
HMGN1-208ENST00000443046 NBPF9Q3BBW0 867 aa18.7■□□□□ 0.58
HMGN1-208ENST00000443046 PHAXQ9H814 394 aaKnown RBP18.7■□□□□ 0.58
HMGN1-208ENST00000443046 WTIPA6NIX2 430 aaPredicted RBP18.69■□□□□ 0.58
HMGN1-208ENST00000443046 GPR25O00155 361 aa18.69■□□□□ 0.58
HMGN1-208ENST00000443046 GOLGA2Q08379 1002 aa18.69■□□□□ 0.58
HMGN1-208ENST00000443046 PRAMEF18Q5VWM3 479 aa18.69■□□□□ 0.58
HMGN1-208ENST00000443046 MBIPQ9NS73 344 aa18.69■□□□□ 0.58
HMGN1-208ENST00000443046 HDAC9Q9UKV0 1011 aa18.69■□□□□ 0.58
HMGN1-208ENST00000443046 DACT2Q5SW24 774 aa18.68■□□□□ 0.58
HMGN1-208ENST00000443046 FBXO46Q6PJ61 603 aaPredicted RBP18.68■□□□□ 0.58
HMGN1-208ENST00000443046 ANKRD18AQ8IVF6 992 aa18.68■□□□□ 0.58
HMGN1-208ENST00000443046 MYD88Q99836 296 aa18.68■□□□□ 0.58
HMGN1-208ENST00000443046 MED23Q9ULK4 1368 aa18.68■□□□□ 0.58
HMGN1-208ENST00000443046 WNT10BO00744 389 aa18.67■□□□□ 0.58
HMGN1-208ENST00000443046 CWC25Q9NXE8 425 aaPredicted RBP18.67■□□□□ 0.58
HMGN1-208ENST00000443046 MMP14P50281 582 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms