RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 CHMP3Q9Y3E7 222 aa19.2■□□□□ 0.66
LIMS3-201ENST00000437679 LTBP1Q14766 1721 aa19.2■□□□□ 0.66
LIMS3-201ENST00000437679 SPEF2Q9C093 1822 aa19.19■□□□□ 0.66
LIMS3-201ENST00000437679 FOXO4P98177 505 aa19.19■□□□□ 0.66
LIMS3-201ENST00000437679 CXCL9Q07325 125 aa19.19■□□□□ 0.66
LIMS3-201ENST00000437679 MPHOSPH8Q99549 860 aa19.19■□□□□ 0.66
LIMS3-201ENST00000437679 ZC3H12CQ9C0D7 883 aaKnown RBP19.19■□□□□ 0.66
LIMS3-201ENST00000437679 ATP2B4P23634 1241 aa19.18■□□□□ 0.66
LIMS3-201ENST00000437679 EPHX2P34913 555 aa19.18■□□□□ 0.66
LIMS3-201ENST00000437679 IFIT5Q13325 482 aaKnown RBP19.18■□□□□ 0.66
LIMS3-201ENST00000437679 TNIP1Q15025 636 aa19.18■□□□□ 0.66
LIMS3-201ENST00000437679 CIAPIN1Q6FI81 312 aa19.18■□□□□ 0.66
LIMS3-201ENST00000437679 GPR101Q96P66 508 aaPredicted RBP19.18■□□□□ 0.66
LIMS3-201ENST00000437679 MINPP1Q9UNW1 487 aa19.18■□□□□ 0.66
LIMS3-201ENST00000437679 G3V3G9 751 aa19.17■□□□□ 0.66
LIMS3-201ENST00000437679 APLP1P51693 650 aa19.17■□□□□ 0.66
LIMS3-201ENST00000437679 RARSP54136 660 aaKnown RBP19.17■□□□□ 0.66
LIMS3-201ENST00000437679 BRPF1P55201 1214 aaPredicted RBP19.17■□□□□ 0.66
LIMS3-201ENST00000437679 EAPPQ56P03 285 aaPredicted RBP19.17■□□□□ 0.66
LIMS3-201ENST00000437679 DCAF8Q5TAQ9 597 aa19.17■□□□□ 0.66
LIMS3-201ENST00000437679 LMBR1LQ6UX01 489 aa19.17■□□□□ 0.66
LIMS3-201ENST00000437679 PNMA8AQ86V59 439 aaPredicted RBP19.17■□□□□ 0.66
LIMS3-201ENST00000437679 DBNDD1Q9H9R9 158 aa19.17■□□□□ 0.66
LIMS3-201ENST00000437679 NOB1Q9ULX3 412 aaKnown RBP19.17■□□□□ 0.66
LIMS3-201ENST00000437679 YDJCA8MPS7 323 aa19.16■□□□□ 0.66
LIMS3-201ENST00000437679 RAD17O75943 681 aa19.16■□□□□ 0.66
LIMS3-201ENST00000437679 DOK7Q18PE1 504 aa19.16■□□□□ 0.66
LIMS3-201ENST00000437679 CCDC57Q2TAC2 916 aa19.16■□□□□ 0.66
LIMS3-201ENST00000437679 EPHA10Q5JZY3 1008 aa19.16■□□□□ 0.66
LIMS3-201ENST00000437679 CHADLQ6NUI6 762 aa19.16■□□□□ 0.66
LIMS3-201ENST00000437679 LDHDQ86WU2 507 aa19.16■□□□□ 0.66
LIMS3-201ENST00000437679 API5Q9BZZ5 524 aaKnown RBP19.16■□□□□ 0.66
LIMS3-201ENST00000437679 UTYO14607 1347 aa19.16■□□□□ 0.66
LIMS3-201ENST00000437679 ECE2O60344 883 aa19.15■□□□□ 0.66
LIMS3-201ENST00000437679 NBPF7P0C2Y1 421 aaPredicted RBP19.15■□□□□ 0.66
LIMS3-201ENST00000437679 SCNN1DP51172 638 aa19.15■□□□□ 0.66
LIMS3-201ENST00000437679 TAF7LQ5H9L4 462 aa19.15■□□□□ 0.66
LIMS3-201ENST00000437679 SUCLG2Q96I99 432 aa19.15■□□□□ 0.66
LIMS3-201ENST00000437679 ANKRD2Q9GZV1 360 aa19.15■□□□□ 0.66
LIMS3-201ENST00000437679 POTEIP0CG38 1075 aa19.14■□□□□ 0.65
LIMS3-201ENST00000437679 POTEJP0CG39 1038 aa19.14■□□□□ 0.65
LIMS3-201ENST00000437679 GMPSP49915 693 aaPredicted RBP19.14■□□□□ 0.65
LIMS3-201ENST00000437679 CCT4P50991 539 aaKnown RBP19.14■□□□□ 0.65
LIMS3-201ENST00000437679 CLEC11AQ9Y240 323 aa19.14■□□□□ 0.65
LIMS3-201ENST00000437679 KIF16BQ96L93 1317 aa19.14■□□□□ 0.65
LIMS3-201ENST00000437679 EPS15P42566 896 aa19.13■□□□□ 0.65
LIMS3-201ENST00000437679 GPRC5DQ9NZD1 345 aa19.13■□□□□ 0.65
LIMS3-201ENST00000437679 LEMD3Q9Y2U8 911 aa19.13■□□□□ 0.65
LIMS3-201ENST00000437679 ZBED9Q6R2W3 1325 aa19.13■□□□□ 0.65
LIMS3-201ENST00000437679 KAZALD1Q96I82 304 aa19.12■□□□□ 0.65
LIMS3-201ENST00000437679 MED23Q9ULK4 1368 aa19.11■□□□□ 0.65
LIMS3-201ENST00000437679 PSMD14O00487 310 aa19.11■□□□□ 0.65
LIMS3-201ENST00000437679 IPO8O15397 1037 aaKnown RBP19.11■□□□□ 0.65
LIMS3-201ENST00000437679 KCNJ4P48050 445 aa19.11■□□□□ 0.65
LIMS3-201ENST00000437679 CHRNDQ07001 517 aa19.11■□□□□ 0.65
LIMS3-201ENST00000437679 USP50Q70EL3 339 aaPredicted RBP19.11■□□□□ 0.65
LIMS3-201ENST00000437679 ARHGAP45Q92619 1136 aa19.11■□□□□ 0.65
LIMS3-201ENST00000437679 USP44Q9H0E7 712 aa19.11■□□□□ 0.65
LIMS3-201ENST00000437679 BICC1Q9H694 974 aaKnown RBP19.11■□□□□ 0.65
LIMS3-201ENST00000437679 ZNF804BA4D1E1 1349 aa19.1■□□□□ 0.65
LIMS3-201ENST00000437679 LDHAL6AQ6ZMR3 332 aa19.1■□□□□ 0.65
LIMS3-201ENST00000437679 ZNF594Q96JF6 807 aaPredicted RBP19.1■□□□□ 0.65
LIMS3-201ENST00000437679 CNNM1Q9NRU3 951 aa19.1■□□□□ 0.65
LIMS3-201ENST00000437679 ADARB2Q9NS39 739 aaKnown RBP19.1■□□□□ 0.65
LIMS3-201ENST00000437679 WTIPA6NIX2 430 aaPredicted RBP19.09■□□□□ 0.65
LIMS3-201ENST00000437679 H7C1D1 291 aa19.09■□□□□ 0.65
LIMS3-201ENST00000437679 RABL6Q3YEC7 729 aaPredicted RBP19.09■□□□□ 0.65
LIMS3-201ENST00000437679 PODNQ7Z5L7 613 aa19.09■□□□□ 0.65
LIMS3-201ENST00000437679 KCNQ5Q9NR82 932 aa19.09■□□□□ 0.65
LIMS3-201ENST00000437679 RPS12P25398 132 aaKnown RBP19.08■□□□□ 0.64
LIMS3-201ENST00000437679 DPF2Q92785 391 aa19.08■□□□□ 0.64
LIMS3-201ENST00000437679 CNOT7Q9UIV1 285 aaKnown RBP19.08■□□□□ 0.64
LIMS3-201ENST00000437679 ZBTB12Q9Y330 459 aaPredicted RBP19.08■□□□□ 0.64
LIMS3-201ENST00000437679 ADAMTSL1Q8N6G6 1762 aa19.08■□□□□ 0.64
LIMS3-201ENST00000437679 CEP350Q5VT06 3117 aa19.08■□□□□ 0.64
LIMS3-201ENST00000437679 SCN9AQ15858 1988 aa19.08■□□□□ 0.64
LIMS3-201ENST00000437679 BCAR3O75815 825 aa19.07■□□□□ 0.64
LIMS3-201ENST00000437679 UBTFL1P0CB47 393 aaPredicted RBP19.07■□□□□ 0.64
LIMS3-201ENST00000437679 ANKRD44Q8N8A2 993 aa19.07■□□□□ 0.64
LIMS3-201ENST00000437679 HELBQ8NG08 1087 aaPredicted RBP19.07■□□□□ 0.64
LIMS3-201ENST00000437679 FRAT1Q92837 279 aaPredicted RBP19.07■□□□□ 0.64
LIMS3-201ENST00000437679 HDAC5Q9UQL6 1122 aa19.07■□□□□ 0.64
LIMS3-201ENST00000437679 TAF5LO75529 589 aa19.06■□□□□ 0.64
LIMS3-201ENST00000437679 VIL1P09327 827 aaKnown RBP19.06■□□□□ 0.64
LIMS3-201ENST00000437679 MAP1SQ66K74 1059 aaPredicted RBP19.06■□□□□ 0.64
LIMS3-201ENST00000437679 MICALL2Q8IY33 904 aa19.06■□□□□ 0.64
LIMS3-201ENST00000437679 CNTROBQ8N137 903 aa19.06■□□□□ 0.64
LIMS3-201ENST00000437679 COA1Q9GZY4 146 aa19.06■□□□□ 0.64
LIMS3-201ENST00000437679 USP17L3A6NCW0 530 aa19.05■□□□□ 0.64
LIMS3-201ENST00000437679 USP17L4A6NCW7 530 aa19.05■□□□□ 0.64
LIMS3-201ENST00000437679 PLIN1O60240 522 aa19.05■□□□□ 0.64
LIMS3-201ENST00000437679 ATF7IPQ6VMQ6 1270 aa19.05■□□□□ 0.64
LIMS3-201ENST00000437679 USP17L1Q7RTZ2 530 aa19.05■□□□□ 0.64
LIMS3-201ENST00000437679 HTRA3P83110 453 aa19.04■□□□□ 0.64
LIMS3-201ENST00000437679 INTS3Q68E01 1043 aaKnown RBP19.04■□□□□ 0.64
LIMS3-201ENST00000437679 RSBN1LQ6PCB5 846 aaPredicted RBP19.04■□□□□ 0.64
LIMS3-201ENST00000437679 TXNRD3Q86VQ6 643 aa19.04■□□□□ 0.64
LIMS3-201ENST00000437679 PSME4Q14997 1843 aa19.04■□□□□ 0.64
LIMS3-201ENST00000437679 A0A1B0GUL6 1792 aa19.04■□□□□ 0.64
LIMS3-201ENST00000437679 PASKQ96RG2 1323 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms