RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 PLA2G12BQ9BX93 195 aa13.94□□□□□ -0.18
LINC00539-203ENST00000434601 RAB11FIP3O75154 756 aa13.93□□□□□ -0.18
LINC00539-203ENST00000434601 SURF6O75683 361 aaKnown RBP13.93□□□□□ -0.18
LINC00539-203ENST00000434601 DDNO94850 711 aaPredicted RBP13.93□□□□□ -0.18
LINC00539-203ENST00000434601 FKBP4Q02790 459 aaKnown RBP eCLIP13.93□□□□□ -0.18
LINC00539-203ENST00000434601 HSP90AB4PQ58FF6 505 aa13.93□□□□□ -0.18
LINC00539-203ENST00000434601 C7orf43Q8WVR3 580 aa13.93□□□□□ -0.18
LINC00539-203ENST00000434601 FAM89AQ96GI7 184 aa13.93□□□□□ -0.18
LINC00539-203ENST00000434601 NYXQ9GZU5 481 aa13.93□□□□□ -0.18
LINC00539-203ENST00000434601 CREBZFQ9NS37 354 aa13.93□□□□□ -0.18
LINC00539-203ENST00000434601 TRMT112Q9UI30 125 aaKnown RBP13.93□□□□□ -0.18
LINC00539-203ENST00000434601 NOP58Q9Y2X3 529 aaKnown RBP13.93□□□□□ -0.18
LINC00539-203ENST00000434601 APBB1O00213 710 aa13.92□□□□□ -0.18
LINC00539-203ENST00000434601 COL13A1Q5TAT6 717 aaPredicted RBP13.92□□□□□ -0.18
LINC00539-203ENST00000434601 SUSD4Q5VX71 490 aa13.92□□□□□ -0.18
LINC00539-203ENST00000434601 LMBR1LQ6UX01 489 aa13.92□□□□□ -0.18
LINC00539-203ENST00000434601 L3MBTL3Q96JM7 780 aaPredicted RBP13.92□□□□□ -0.18
LINC00539-203ENST00000434601 UTP14AQ9BVJ6 771 aaKnown RBP13.92□□□□□ -0.18
LINC00539-203ENST00000434601 LRRCC1Q9C099 1032 aa13.92□□□□□ -0.18
LINC00539-203ENST00000434601 SH3TC1Q8TE82 1336 aa13.91□□□□□ -0.18
LINC00539-203ENST00000434601 IRS4O14654 1257 aaPredicted RBP13.91□□□□□ -0.18
LINC00539-203ENST00000434601 SMARCA5O60264 1052 aaPredicted RBP13.91□□□□□ -0.18
LINC00539-203ENST00000434601 NTSR2O95665 410 aa13.91□□□□□ -0.18
LINC00539-203ENST00000434601 RFX5P48382 616 aaPredicted RBP13.91□□□□□ -0.18
LINC00539-203ENST00000434601 LDHDQ86WU2 507 aa13.91□□□□□ -0.18
LINC00539-203ENST00000434601 ERC1Q8IUD2 1116 aa13.91□□□□□ -0.18
LINC00539-203ENST00000434601 PA2G4Q9UQ80 394 aaKnown RBP13.91□□□□□ -0.18
LINC00539-203ENST00000434601 CHMP3Q9Y3E7 222 aa13.91□□□□□ -0.18
LINC00539-203ENST00000434601 CTSWP56202 376 aa13.9□□□□□ -0.18
LINC00539-203ENST00000434601 OS9Q13438 667 aaPredicted RBP13.9□□□□□ -0.18
LINC00539-203ENST00000434601 CC2D2BQ6DHV5 1058 aa13.9□□□□□ -0.18
LINC00539-203ENST00000434601 KIF1BPQ96EK5 621 aa13.9□□□□□ -0.18
LINC00539-203ENST00000434601 COPRSQ9NQ92 184 aa13.9□□□□□ -0.18
LINC00539-203ENST00000434601 FAM177BA6PVY3 158 aa13.89□□□□□ -0.19
LINC00539-203ENST00000434601 PDE8AO60658 829 aa13.89□□□□□ -0.19
LINC00539-203ENST00000434601 HSPA1AP0DMV8 641 aaKnown RBP13.89□□□□□ -0.19
LINC00539-203ENST00000434601 HSPA1BP0DMV9 641 aaKnown RBP13.89□□□□□ -0.19
LINC00539-203ENST00000434601 GRIPAP1Q4V328 841 aa13.89□□□□□ -0.19
LINC00539-203ENST00000434601 TNS4Q8IZW8 715 aa13.89□□□□□ -0.19
LINC00539-203ENST00000434601 SYNE4Q8N205 404 aa13.89□□□□□ -0.19
LINC00539-203ENST00000434601 RHPN1Q8TCX5 695 aa13.89□□□□□ -0.19
LINC00539-203ENST00000434601 CSF1RP07333 972 aa13.88□□□□□ -0.19
LINC00539-203ENST00000434601 HSP90B1P14625 803 aaKnown RBP13.88□□□□□ -0.19
LINC00539-203ENST00000434601 PTPN12Q05209 780 aaKnown RBP13.88□□□□□ -0.19
LINC00539-203ENST00000434601 G3BP1Q13283 466 aaKnown RBP eCLIP13.88□□□□□ -0.19
LINC00539-203ENST00000434601 FAM161AQ3B820 660 aa13.88□□□□□ -0.19
LINC00539-203ENST00000434601 JDP2Q8WYK2 163 aa13.88□□□□□ -0.19
LINC00539-203ENST00000434601 TAF1DQ9H5J8 278 aaPredicted RBP13.88□□□□□ -0.19
LINC00539-203ENST00000434601 ZNF277Q9NRM2 450 aaPredicted RBP13.88□□□□□ -0.19
LINC00539-203ENST00000434601 IARSP41252 1262 aaKnown RBP13.87□□□□□ -0.19
LINC00539-203ENST00000434601 CRY2Q49AN0 593 aa13.87□□□□□ -0.19
LINC00539-203ENST00000434601 PNMA8AQ86V59 439 aaPredicted RBP13.87□□□□□ -0.19
LINC00539-203ENST00000434601 KLHDC4Q8TBB5 520 aa13.87□□□□□ -0.19
LINC00539-203ENST00000434601 RPGRQ92834 1020 aaKnown RBP13.87□□□□□ -0.19
LINC00539-203ENST00000434601 PSMD1Q99460 953 aa13.87□□□□□ -0.19
LINC00539-203ENST00000434601 SIL1Q9H173 461 aa13.87□□□□□ -0.19
LINC00539-203ENST00000434601 HACL1Q9UJ83 578 aa13.87□□□□□ -0.19
LINC00539-203ENST00000434601 ABCC12Q96J65 1359 aa13.86□□□□□ -0.19
LINC00539-203ENST00000434601 FZD9O00144 591 aa13.86□□□□□ -0.19
LINC00539-203ENST00000434601 POTEIP0CG38 1075 aa13.86□□□□□ -0.19
LINC00539-203ENST00000434601 POTEJP0CG39 1038 aa13.86□□□□□ -0.19
LINC00539-203ENST00000434601 CCDC57Q2TAC2 916 aa13.86□□□□□ -0.19
LINC00539-203ENST00000434601 NUTM1Q86Y26 1132 aa13.86□□□□□ -0.19
LINC00539-203ENST00000434601 PLEKHM2Q8IWE5 1019 aa13.86□□□□□ -0.19
LINC00539-203ENST00000434601 GPC2Q8N158 579 aa13.86□□□□□ -0.19
LINC00539-203ENST00000434601 TTLL11Q8NHH1 800 aa13.86□□□□□ -0.19
LINC00539-203ENST00000434601 OTUD7AQ8TE49 926 aaPredicted RBP13.86□□□□□ -0.19
LINC00539-203ENST00000434601 BCL11AQ9H165 835 aa13.86□□□□□ -0.19
LINC00539-203ENST00000434601 IL1RAPL2Q9NP60 686 aa13.86□□□□□ -0.19
LINC00539-203ENST00000434601 RIC1Q4ADV7 1423 aa13.86□□□□□ -0.19
LINC00539-203ENST00000434601 PASKQ96RG2 1323 aa13.86□□□□□ -0.19
LINC00539-203ENST00000434601 SALL3Q9BXA9 1300 aa13.86□□□□□ -0.19
LINC00539-203ENST00000434601 RTL9Q8NET4 1388 aa13.85□□□□□ -0.19
LINC00539-203ENST00000434601 TMEM88BA6NKF7 163 aa13.85□□□□□ -0.19
LINC00539-203ENST00000434601 HCLS1P14317 486 aaPredicted RBP13.85□□□□□ -0.19
LINC00539-203ENST00000434601 IFIT5Q13325 482 aaKnown RBP13.85□□□□□ -0.19
LINC00539-203ENST00000434601 EAPPQ56P03 285 aaPredicted RBP13.85□□□□□ -0.19
LINC00539-203ENST00000434601 CCDC85AQ96PX6 553 aaPredicted RBP13.85□□□□□ -0.19
LINC00539-203ENST00000434601 TMX4Q9H1E5 349 aaPredicted RBP13.85□□□□□ -0.19
LINC00539-203ENST00000434601 GREM2Q9H772 168 aa13.85□□□□□ -0.19
LINC00539-203ENST00000434601 MKRN1Q9UHC7 482 aaKnown RBP13.85□□□□□ -0.19
LINC00539-203ENST00000434601 CLEC11AQ9Y240 323 aa13.85□□□□□ -0.19
LINC00539-203ENST00000434601 ZNF541Q9H0D2 1346 aa13.85□□□□□ -0.19
LINC00539-203ENST00000434601 ANKRD18BA2A2Z9 1011 aa13.84□□□□□ -0.19
LINC00539-203ENST00000434601 CIAO1O76071 339 aa13.84□□□□□ -0.19
LINC00539-203ENST00000434601 SASH1O94885 1247 aa13.84□□□□□ -0.19
LINC00539-203ENST00000434601 ITGA6P23229 1130 aa13.84□□□□□ -0.19
LINC00539-203ENST00000434601 HOXA10P31260 410 aaPredicted RBP13.84□□□□□ -0.19
LINC00539-203ENST00000434601 EPHX2P34913 555 aa13.84□□□□□ -0.19
LINC00539-203ENST00000434601 EIF6P56537 245 aaKnown RBP13.84□□□□□ -0.19
LINC00539-203ENST00000434601 TAF7LQ5H9L4 462 aa13.84□□□□□ -0.19
LINC00539-203ENST00000434601 CLASRPQ8N2M8 674 aaKnown RBP13.84□□□□□ -0.19
LINC00539-203ENST00000434601 RBM17Q96I25 401 aaKnown RBP13.84□□□□□ -0.19
LINC00539-203ENST00000434601 FBXO3Q9UK99 471 aa13.84□□□□□ -0.19
LINC00539-203ENST00000434601 SPEF2Q9C093 1822 aa13.84□□□□□ -0.19
LINC00539-203ENST00000434601 AOX1Q06278 1338 aa13.84□□□□□ -0.19
LINC00539-203ENST00000434601 CNTNAP1P78357 1384 aa13.83□□□□□ -0.19
LINC00539-203ENST00000434601 ADAMTSL1Q8N6G6 1762 aa13.83□□□□□ -0.19
LINC00539-203ENST00000434601 EYA2O00167 538 aa13.83□□□□□ -0.2
LINC00539-203ENST00000434601 ITGBL1O95965 494 aaPredicted RBP13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms