RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 CDHR2Q9BYE9 1310 aa10.54□□□□□ -0.72
VIM-202ENST00000421459 ANKRD36CQ5JPF3 1778 aa10.53□□□□□ -0.72
VIM-202ENST00000421459 APAF1O14727 1248 aa10.53□□□□□ -0.72
VIM-202ENST00000421459 ZNF853P0CG23 659 aa10.53□□□□□ -0.72
VIM-202ENST00000421459 TMC4Q7Z404 712 aa10.53□□□□□ -0.72
VIM-202ENST00000421459 C8orf58Q8NAV2 365 aa10.53□□□□□ -0.72
VIM-202ENST00000421459 HHIPL1Q96JK4 782 aa10.53□□□□□ -0.72
VIM-202ENST00000421459 DDX60Q8IY21 1712 aaKnown RBP10.53□□□□□ -0.72
VIM-202ENST00000421459 FAM155AB1AL88 458 aaPredicted RBP10.52□□□□□ -0.73
VIM-202ENST00000421459 UFL1O94874 794 aa10.52□□□□□ -0.73
VIM-202ENST00000421459 HOXB7P09629 217 aa10.52□□□□□ -0.73
VIM-202ENST00000421459 BRPF1P55201 1214 aaPredicted RBP10.52□□□□□ -0.73
VIM-202ENST00000421459 TRIM28Q13263 835 aaKnown RBP10.52□□□□□ -0.73
VIM-202ENST00000421459 KIF4BQ2VIQ3 1234 aa10.52□□□□□ -0.73
VIM-202ENST00000421459 ZBTB38Q8NAP3 1195 aaPredicted RBP10.52□□□□□ -0.73
VIM-202ENST00000421459 DCPSQ96C86 337 aaKnown RBP10.52□□□□□ -0.73
VIM-202ENST00000421459 GBA2Q9HCG7 927 aaPredicted RBP10.52□□□□□ -0.73
VIM-202ENST00000421459 ANKIB1Q9P2G1 1089 aa10.52□□□□□ -0.73
VIM-202ENST00000421459 TRPM7Q96QT4 1865 aa10.51□□□□□ -0.73
VIM-202ENST00000421459 VIL1P09327 827 aaKnown RBP10.51□□□□□ -0.73
VIM-202ENST00000421459 KIF23Q02241 960 aaPredicted RBP10.51□□□□□ -0.73
VIM-202ENST00000421459 DGKZQ13574 1117 aa10.51□□□□□ -0.73
VIM-202ENST00000421459 RGMBQ6NW40 437 aa10.51□□□□□ -0.73
VIM-202ENST00000421459 TSPYL6Q8N831 410 aa10.51□□□□□ -0.73
VIM-202ENST00000421459 EYA3Q99504 573 aa10.51□□□□□ -0.73
VIM-202ENST00000421459 MXD3Q9BW11 206 aa10.51□□□□□ -0.73
VIM-202ENST00000421459 ZC3H12CQ9C0D7 883 aaKnown RBP10.51□□□□□ -0.73
VIM-202ENST00000421459 GGA3Q9NZ52 723 aa10.51□□□□□ -0.73
VIM-202ENST00000421459 LRRC37AA6NMS7 1700 aa10.5□□□□□ -0.73
VIM-202ENST00000421459 G3V3G9 751 aa10.5□□□□□ -0.73
VIM-202ENST00000421459 RPS12P25398 132 aaKnown RBP10.5□□□□□ -0.73
VIM-202ENST00000421459 ZNF157P51786 506 aaPredicted RBP10.5□□□□□ -0.73
VIM-202ENST00000421459 GOLGA2Q08379 1002 aa10.5□□□□□ -0.73
VIM-202ENST00000421459 NOGQ13253 232 aa10.5□□□□□ -0.73
VIM-202ENST00000421459 SCARF1Q14162 830 aa10.5□□□□□ -0.73
VIM-202ENST00000421459 DCAF8Q5TAQ9 597 aa10.5□□□□□ -0.73
VIM-202ENST00000421459 PRAMEF18Q5VWM3 479 aa10.5□□□□□ -0.73
VIM-202ENST00000421459 MOB2Q70IA6 237 aa10.5□□□□□ -0.73
VIM-202ENST00000421459 C2orf69Q8N8R5 385 aa10.5□□□□□ -0.73
VIM-202ENST00000421459 PODXL2Q9NZ53 605 aa10.5□□□□□ -0.73
VIM-202ENST00000421459 GGA1Q9UJY5 639 aa10.5□□□□□ -0.73
VIM-202ENST00000421459 CA12O43570 354 aa10.49□□□□□ -0.73
VIM-202ENST00000421459 TRPA1O75762 1119 aa10.49□□□□□ -0.73
VIM-202ENST00000421459 PCCAP05165 728 aaPredicted RBP10.49□□□□□ -0.73
VIM-202ENST00000421459 MLLT1Q03111 559 aaPredicted RBP10.49□□□□□ -0.73
VIM-202ENST00000421459 ANGEL2Q5VTE6 544 aaKnown RBP10.49□□□□□ -0.73
VIM-202ENST00000421459 RSBN1LQ6PCB5 846 aaPredicted RBP10.49□□□□□ -0.73
VIM-202ENST00000421459 CDCA5Q96FF9 252 aa10.49□□□□□ -0.73
VIM-202ENST00000421459 IFT57Q9NWB7 429 aa10.49□□□□□ -0.73
VIM-202ENST00000421459 CWC25Q9NXE8 425 aaPredicted RBP10.49□□□□□ -0.73
VIM-202ENST00000421459 RNF186Q9NXI6 227 aa10.49□□□□□ -0.73
VIM-202ENST00000421459 PDE8AO60658 829 aa10.48□□□□□ -0.73
VIM-202ENST00000421459 IGKV5-2P06315 115 aa10.48□□□□□ -0.73
VIM-202ENST00000421459 RGS19P49795 217 aa10.48□□□□□ -0.73
VIM-202ENST00000421459 GNAI1P63096 354 aa10.48□□□□□ -0.73
VIM-202ENST00000421459 CCDC152Q4G0S7 254 aa10.48□□□□□ -0.73
VIM-202ENST00000421459 CCDC184Q52MB2 194 aa10.48□□□□□ -0.73
VIM-202ENST00000421459 CCDC191Q8NCU4 936 aa10.48□□□□□ -0.73
VIM-202ENST00000421459 TSR2Q969E8 191 aaKnown RBP10.48□□□□□ -0.73
VIM-202ENST00000421459 CSRNP1Q96S65 589 aa10.48□□□□□ -0.73
VIM-202ENST00000421459 GMLQ99445 158 aa10.48□□□□□ -0.73
VIM-202ENST00000421459 METTL22Q9BUU2 404 aaPredicted RBP10.48□□□□□ -0.73
VIM-202ENST00000421459 PRKRIP1Q9H875 184 aaPredicted RBP10.48□□□□□ -0.73
VIM-202ENST00000421459 MAP3K2Q9Y2U5 619 aa10.48□□□□□ -0.73
VIM-202ENST00000421459 TNRC18O15417 2968 aaPredicted RBP10.47□□□□□ -0.73
VIM-202ENST00000421459 ZNF280AP59817 542 aaPredicted RBP10.47□□□□□ -0.73
VIM-202ENST00000421459 CWF19L2Q2TBE0 894 aaKnown RBP10.47□□□□□ -0.73
VIM-202ENST00000421459 G2E3Q7L622 706 aa10.47□□□□□ -0.73
VIM-202ENST00000421459 ANKRD18AQ8IVF6 992 aa10.47□□□□□ -0.73
VIM-202ENST00000421459 SULF1Q8IWU6 871 aa10.47□□□□□ -0.73
VIM-202ENST00000421459 GREM2Q9H772 168 aa10.47□□□□□ -0.73
VIM-202ENST00000421459 PI4KAP2A4QPH2 592 aa10.46□□□□□ -0.73
VIM-202ENST00000421459 UBE2Q2LH0YL09 131 aa10.46□□□□□ -0.73
VIM-202ENST00000421459 SLC10A3P09131 477 aa10.46□□□□□ -0.73
VIM-202ENST00000421459 CTSWP56202 376 aa10.46□□□□□ -0.73
VIM-202ENST00000421459 NBPF9Q3BBW0 867 aa10.46□□□□□ -0.73
VIM-202ENST00000421459 TXNRD3Q86VQ6 643 aa10.46□□□□□ -0.73
VIM-202ENST00000421459 PI4KAP1Q8N8J0 262 aa10.46□□□□□ -0.73
VIM-202ENST00000421459 TTLL11Q8NHH1 800 aa10.46□□□□□ -0.73
VIM-202ENST00000421459 FBXW7Q969H0 707 aa10.46□□□□□ -0.73
VIM-202ENST00000421459 CCDC102AQ96A19 550 aa10.46□□□□□ -0.73
VIM-202ENST00000421459 MYOZ2Q9NPC6 264 aa10.46□□□□□ -0.73
VIM-202ENST00000421459 MINPP1Q9UNW1 487 aa10.46□□□□□ -0.73
VIM-202ENST00000421459 SCN9AQ15858 1988 aa10.46□□□□□ -0.74
VIM-202ENST00000421459 XDHP47989 1333 aa10.45□□□□□ -0.74
VIM-202ENST00000421459 USP17L3A6NCW0 530 aa10.45□□□□□ -0.74
VIM-202ENST00000421459 USP17L4A6NCW7 530 aa10.45□□□□□ -0.74
VIM-202ENST00000421459 USP17L8P0C7I0 530 aa10.45□□□□□ -0.74
VIM-202ENST00000421459 ATP2B4P23634 1241 aa10.45□□□□□ -0.74
VIM-202ENST00000421459 KLRK1P26718 216 aa10.45□□□□□ -0.74
VIM-202ENST00000421459 SOX10P56693 466 aa10.45□□□□□ -0.74
VIM-202ENST00000421459 CCDC30Q5VVM6 783 aa10.45□□□□□ -0.74
VIM-202ENST00000421459 KSR2Q6VAB6 950 aa10.45□□□□□ -0.74
VIM-202ENST00000421459 USP17L1Q7RTZ2 530 aa10.45□□□□□ -0.74
VIM-202ENST00000421459 RASAL3Q86YV0 1011 aa10.45□□□□□ -0.74
VIM-202ENST00000421459 AGBL3Q8NEM8 1001 aa10.45□□□□□ -0.74
VIM-202ENST00000421459 CASP8AP2Q9UKL3 1982 aa10.45□□□□□ -0.74
VIM-202ENST00000421459 SNAP23O00161 211 aa10.44□□□□□ -0.74
VIM-202ENST00000421459 DDX58O95786 925 aaKnown RBP10.44□□□□□ -0.74
VIM-202ENST00000421459 MKRN3Q13064 507 aaKnown RBP10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms