RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 CEP126Q9P2H0 1117 aa16.27■□□□□ 0.2
LIMS1-205ENST00000410093 WDR33Q9C0J8 1336 aaKnown RBP16.27■□□□□ 0.19
LIMS1-205ENST00000410093 FSD2A1L4K1 749 aa16.26■□□□□ 0.19
LIMS1-205ENST00000410093 BRD1O95696 1058 aa16.26■□□□□ 0.19
LIMS1-205ENST00000410093 USPL1Q5W0Q7 1092 aa16.26■□□□□ 0.19
LIMS1-205ENST00000410093 RUFY3Q7L099 469 aa16.26■□□□□ 0.19
LIMS1-205ENST00000410093 KBTBD3Q8NAB2 608 aa16.26■□□□□ 0.19
LIMS1-205ENST00000410093 HELLSQ9NRZ9 838 aa16.26■□□□□ 0.19
LIMS1-205ENST00000410093 RBM8AQ9Y5S9 174 aaKnown RBP16.26■□□□□ 0.19
LIMS1-205ENST00000410093 BTAF1O14981 1849 aa16.26■□□□□ 0.19
LIMS1-205ENST00000410093 SH3TC1Q8TE82 1336 aa16.26■□□□□ 0.19
LIMS1-205ENST00000410093 RPAP1Q9BWH6 1393 aaPredicted RBP16.26■□□□□ 0.19
LIMS1-205ENST00000410093 CREB3L3Q68CJ9 461 aa16.25■□□□□ 0.19
LIMS1-205ENST00000410093 ZGPATQ8N5A5 531 aaKnown RBP16.25■□□□□ 0.19
LIMS1-205ENST00000410093 UPF3BQ9BZI7 483 aaKnown RBP16.25■□□□□ 0.19
LIMS1-205ENST00000410093 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.25■□□□□ 0.19
LIMS1-205ENST00000410093 U3KPZ7 1027 aaPredicted RBP16.25■□□□□ 0.19
LIMS1-205ENST00000410093 CASTP20810 708 aaKnown RBP16.24■□□□□ 0.19
LIMS1-205ENST00000410093 MRE11P49959 708 aa16.24■□□□□ 0.19
LIMS1-205ENST00000410093 PTH1RQ03431 593 aa16.24■□□□□ 0.19
LIMS1-205ENST00000410093 IFIT5Q13325 482 aaKnown RBP16.24■□□□□ 0.19
LIMS1-205ENST00000410093 MCMDC2Q4G0Z9 681 aa16.24■□□□□ 0.19
LIMS1-205ENST00000410093 RASEFQ8IZ41 740 aa16.24■□□□□ 0.19
LIMS1-205ENST00000410093 DBNDD2Q9BQY9 259 aa16.24■□□□□ 0.19
LIMS1-205ENST00000410093 PDRG1Q9NUG6 133 aa16.24■□□□□ 0.19
LIMS1-205ENST00000410093 RGL2O15211 777 aa16.24■□□□□ 0.19
LIMS1-205ENST00000410093 CCDC158Q5M9N0 1113 aa16.24■□□□□ 0.19
LIMS1-205ENST00000410093 PRPF40BQ6NWY9 871 aaKnown RBP16.24■□□□□ 0.19
LIMS1-205ENST00000410093 KLHL34Q8N239 644 aa16.24■□□□□ 0.19
LIMS1-205ENST00000410093 JARID2Q92833 1246 aaPredicted RBP16.24■□□□□ 0.19
LIMS1-205ENST00000410093 SMARCC1Q92922 1105 aaPredicted RBP16.24■□□□□ 0.19
LIMS1-205ENST00000410093 FAM227BQ96M60 508 aa16.24■□□□□ 0.19
LIMS1-205ENST00000410093 JAKMIP1Q96N16 626 aaKnown RBP16.24■□□□□ 0.19
LIMS1-205ENST00000410093 CCNL1Q9UK58 526 aaPredicted RBP16.24■□□□□ 0.19
LIMS1-205ENST00000410093 ATP6V1DQ9Y5K8 247 aa16.24■□□□□ 0.19
LIMS1-205ENST00000410093 A0A0D9SFI3 127 aa16.23■□□□□ 0.19
LIMS1-205ENST00000410093 SLC27A2O14975 620 aa16.23■□□□□ 0.19
LIMS1-205ENST00000410093 TAF5LO75529 589 aa16.23■□□□□ 0.19
LIMS1-205ENST00000410093 ZFYP08048 801 aaPredicted RBP16.23■□□□□ 0.19
LIMS1-205ENST00000410093 AK2P54819 239 aa16.23■□□□□ 0.19
LIMS1-205ENST00000410093 NLRP10Q86W26 655 aa16.23■□□□□ 0.19
LIMS1-205ENST00000410093 CHMP4CQ96CF2 233 aa16.23■□□□□ 0.19
LIMS1-205ENST00000410093 ZBTB7AO95365 584 aa16.22■□□□□ 0.19
LIMS1-205ENST00000410093 MBD3O95983 291 aa16.22■□□□□ 0.19
LIMS1-205ENST00000410093 HMGB1P09429 215 aaKnown RBP16.22■□□□□ 0.19
LIMS1-205ENST00000410093 TAF7LQ5H9L4 462 aa16.22■□□□□ 0.19
LIMS1-205ENST00000410093 ZNF512BQ96KM6 892 aaPredicted RBP16.22■□□□□ 0.19
LIMS1-205ENST00000410093 LRRC4BQ9NT99 713 aa16.22■□□□□ 0.19
LIMS1-205ENST00000410093 PAG1Q9NWQ8 432 aa16.22■□□□□ 0.19
LIMS1-205ENST00000410093 DDX49Q9Y6V7 483 aaKnown RBP16.22■□□□□ 0.19
LIMS1-205ENST00000410093 A0A1B0GUL7 405 aa16.21■□□□□ 0.19
LIMS1-205ENST00000410093 MCTP1Q6DN14 999 aa16.21■□□□□ 0.19
LIMS1-205ENST00000410093 BLOC1S2Q6QNY1 142 aa16.21■□□□□ 0.19
LIMS1-205ENST00000410093 NEUROD6Q96NK8 337 aa16.21■□□□□ 0.19
LIMS1-205ENST00000410093 DSCC1Q9BVC3 393 aa16.21■□□□□ 0.19
LIMS1-205ENST00000410093 TFCP2L1Q9NZI6 479 aa16.21■□□□□ 0.19
LIMS1-205ENST00000410093 ZDHHC9Q9Y397 364 aa16.21■□□□□ 0.19
LIMS1-205ENST00000410093 ANKRD18BA2A2Z9 1011 aa16.2■□□□□ 0.18
LIMS1-205ENST00000410093 PDE8AO60658 829 aa16.2■□□□□ 0.18
LIMS1-205ENST00000410093 IFIT1P09914 478 aaKnown RBP16.2■□□□□ 0.18
LIMS1-205ENST00000410093 LMBRD1Q9NUN5 540 aa16.2■□□□□ 0.18
LIMS1-205ENST00000410093 SMC3Q9UQE7 1217 aa16.2■□□□□ 0.18
LIMS1-205ENST00000410093 DCAF8L1A6NGE4 600 aa16.19■□□□□ 0.18
LIMS1-205ENST00000410093 CTSWP56202 376 aa16.19■□□□□ 0.18
LIMS1-205ENST00000410093 PARP10Q53GL7 1025 aa16.19■□□□□ 0.18
LIMS1-205ENST00000410093 DZIP3Q86Y13 1208 aaKnown RBP16.19■□□□□ 0.18
LIMS1-205ENST00000410093 ZNF34Q8IZ26 560 aa16.19■□□□□ 0.18
LIMS1-205ENST00000410093 DNAJC2Q99543 621 aaKnown RBP16.19■□□□□ 0.18
LIMS1-205ENST00000410093 MTFR1LQ9H019 292 aa16.19■□□□□ 0.18
LIMS1-205ENST00000410093 ATF5Q9Y2D1 282 aaPredicted RBP16.19■□□□□ 0.18
LIMS1-205ENST00000410093 ZNF330Q9Y3S2 320 aaPredicted RBP16.19■□□□□ 0.18
LIMS1-205ENST00000410093 MYH7P12883 1935 aa16.19■□□□□ 0.18
LIMS1-205ENST00000410093 PDCP20941 246 aa16.19■□□□□ 0.18
LIMS1-205ENST00000410093 RPS6KB1P23443 525 aa16.19■□□□□ 0.18
LIMS1-205ENST00000410093 EIF5P55010 431 aaKnown RBP16.19■□□□□ 0.18
LIMS1-205ENST00000410093 KCNQ4P56696 695 aa16.19■□□□□ 0.18
LIMS1-205ENST00000410093 CSPP1Q1MSJ5 1256 aa16.19■□□□□ 0.18
LIMS1-205ENST00000410093 LRRC24Q50LG9 513 aa16.19■□□□□ 0.18
LIMS1-205ENST00000410093 SLC4A9Q96Q91 983 aa16.19■□□□□ 0.18
LIMS1-205ENST00000410093 PDGFDQ9GZP0 370 aaPredicted RBP16.19■□□□□ 0.18
LIMS1-205ENST00000410093 CCDC87Q9NVE4 849 aa16.19■□□□□ 0.18
LIMS1-205ENST00000410093 ZBTB1Q9Y2K1 713 aa16.19■□□□□ 0.18
LIMS1-205ENST00000410093 LAMB2P55268 1798 aa16.18■□□□□ 0.18
LIMS1-205ENST00000410093 ZNF827Q17R98 1081 aa16.18■□□□□ 0.18
LIMS1-205ENST00000410093 ZMYM1Q5SVZ6 1142 aa16.18■□□□□ 0.18
LIMS1-205ENST00000410093 GORABQ5T7V8 394 aa16.18■□□□□ 0.18
LIMS1-205ENST00000410093 ZSCAN25Q6NSZ9 544 aa16.18■□□□□ 0.18
LIMS1-205ENST00000410093 TTLL11Q8NHH1 800 aa16.18■□□□□ 0.18
LIMS1-205ENST00000410093 FAM89AQ96GI7 184 aa16.18■□□□□ 0.18
LIMS1-205ENST00000410093 IRS4O14654 1257 aaPredicted RBP16.17■□□□□ 0.18
LIMS1-205ENST00000410093 RNF113AO15541 343 aaKnown RBP16.17■□□□□ 0.18
LIMS1-205ENST00000410093 NCLP19338 710 aaKnown RBP16.17■□□□□ 0.18
LIMS1-205ENST00000410093 TIMM10P62072 90 aa16.17■□□□□ 0.18
LIMS1-205ENST00000410093 TTC39AQ5SRH9 613 aa16.17■□□□□ 0.18
LIMS1-205ENST00000410093 AKT1S1Q96B36 256 aa16.17■□□□□ 0.18
LIMS1-205ENST00000410093 TRMT112Q9UI30 125 aaKnown RBP16.17■□□□□ 0.18
LIMS1-205ENST00000410093 COL5A3P25940 1745 aaPredicted RBP16.17■□□□□ 0.18
LIMS1-205ENST00000410093 ARAP2Q8WZ64 1704 aa16.17■□□□□ 0.18
LIMS1-205ENST00000410093 RTL9Q8NET4 1388 aa16.16■□□□□ 0.18
LIMS1-205ENST00000410093 MROH5Q6ZUA9 1318 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms