RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 CCDC38Q502W7 563 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 KIFAP3Q92845 792 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 GKAP1Q5VSY0 366 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-210ENST00000409694 PLCB1Q9NQ66 1216 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 ATP6V0A2Q9Y487 856 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 EEF2P13639 858 aaKnown RBP8.91□□□□□ -0.98
SYNE1-210ENST00000409694 ATP6V1E1P36543 226 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 ARHGAP25P42331 645 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 MPNDQ8N594 471 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 CPLX3Q8WVH0 158 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 RASSF4Q9H2L5 321 aa8.91□□□□□ -0.98
SYNE1-210ENST00000409694 CCDC141Q6ZP82 1450 aa8.9□□□□□ -0.98
SYNE1-210ENST00000409694 ATAD2Q6PL18 1390 aa8.9□□□□□ -0.98
SYNE1-210ENST00000409694 ZNF365Q70YC5 407 aa8.9□□□□□ -0.98
SYNE1-210ENST00000409694 I3L4J1 428 aa8.9□□□□□ -0.98
SYNE1-210ENST00000409694 PSMA7O14818 248 aa8.9□□□□□ -0.98
SYNE1-210ENST00000409694 DDX27Q96GQ7 796 aaKnown RBP8.9□□□□□ -0.98
SYNE1-210ENST00000409694 CABP5Q9NP86 173 aa8.9□□□□□ -0.98
SYNE1-210ENST00000409694 CABP2Q9NPB3 220 aa8.9□□□□□ -0.98
SYNE1-210ENST00000409694 ADAMTS8Q9UP79 889 aa8.9□□□□□ -0.98
SYNE1-210ENST00000409694 IFIT3O14879 490 aaKnown RBP8.9□□□□□ -0.98
SYNE1-210ENST00000409694 CCDC170Q8IYT3 715 aa8.9□□□□□ -0.98
SYNE1-210ENST00000409694 EVI5LQ96CN4 794 aa8.9□□□□□ -0.98
SYNE1-210ENST00000409694 MRVI1Q9Y6F6 885 aa8.9□□□□□ -0.98
SYNE1-210ENST00000409694 ABCC11Q96J66 1382 aa8.9□□□□□ -0.98
SYNE1-210ENST00000409694 SLC8A3P57103 927 aa8.9□□□□□ -0.99
SYNE1-210ENST00000409694 ZGPATQ8N5A5 531 aaKnown RBP8.9□□□□□ -0.99
SYNE1-210ENST00000409694 HAUS7Q99871 368 aa8.9□□□□□ -0.99
SYNE1-210ENST00000409694 Q9H521 79 aa8.9□□□□□ -0.99
SYNE1-210ENST00000409694 RBM27Q9P2N5 1060 aaKnown RBP8.9□□□□□ -0.99
SYNE1-210ENST00000409694 GNAT3A8MTJ3 354 aa8.9□□□□□ -0.99
SYNE1-210ENST00000409694 FAM13AO94988 1023 aa8.9□□□□□ -0.99
SYNE1-210ENST00000409694 PPP2R1AP30153 589 aa8.9□□□□□ -0.99
SYNE1-210ENST00000409694 IFIT5Q13325 482 aaKnown RBP8.9□□□□□ -0.99
SYNE1-210ENST00000409694 RAB11FIP4Q86YS3 637 aa8.9□□□□□ -0.99
SYNE1-210ENST00000409694 GGNBP2Q9H3C7 697 aa8.9□□□□□ -0.99
SYNE1-210ENST00000409694 ITIH3Q06033 890 aa8.89□□□□□ -0.99
SYNE1-210ENST00000409694 ALDH1L2Q3SY69 923 aa8.89□□□□□ -0.99
SYNE1-210ENST00000409694 PRPF40BQ6NWY9 871 aaKnown RBP8.89□□□□□ -0.99
SYNE1-210ENST00000409694 MCUR1Q96AQ8 359 aa8.89□□□□□ -0.99
SYNE1-210ENST00000409694 THEGQ9P2T0 379 aa8.89□□□□□ -0.99
SYNE1-210ENST00000409694 SDCCAG8Q86SQ7 713 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-210ENST00000409694 TMTC2Q8N394 836 aa8.89□□□□□ -0.99
SYNE1-210ENST00000409694 ERCC5P28715 1186 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-210ENST00000409694 ZNF165P49910 485 aa8.89□□□□□ -0.99
SYNE1-210ENST00000409694 KRT23Q9C075 422 aa8.89□□□□□ -0.99
SYNE1-210ENST00000409694 METAP2P50579 478 aaKnown RBP eCLIP8.89□□□□□ -0.99
SYNE1-210ENST00000409694 MFSD6Q6ZSS7 791 aa8.89□□□□□ -0.99
SYNE1-210ENST00000409694 EIF2AQ9BY44 585 aaKnown RBP8.89□□□□□ -0.99
SYNE1-210ENST00000409694 LDHCP07864 332 aa8.89□□□□□ -0.99
SYNE1-210ENST00000409694 XPCQ01831 940 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-210ENST00000409694 PSPC1Q8WXF1 523 aaKnown RBP8.89□□□□□ -0.99
SYNE1-210ENST00000409694 UTP11Q9Y3A2 253 aaKnown RBP8.89□□□□□ -0.99
SYNE1-210ENST00000409694 ANKRD50Q9ULJ7 1429 aa8.89□□□□□ -0.99
SYNE1-210ENST00000409694 ACTN4O43707 911 aaKnown RBP8.89□□□□□ -0.99
SYNE1-210ENST00000409694 CNNM2Q9H8M5 875 aa8.89□□□□□ -0.99
SYNE1-210ENST00000409694 SYKP43405 635 aa8.89□□□□□ -0.99
SYNE1-210ENST00000409694 WHAMMQ8TF30 809 aa8.89□□□□□ -0.99
SYNE1-210ENST00000409694 ERBINQ96RT1 1412 aa8.89□□□□□ -0.99
SYNE1-210ENST00000409694 E7EVH7 732 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 IARSP41252 1262 aaKnown RBP8.88□□□□□ -0.99
SYNE1-210ENST00000409694 MCM6Q14566 821 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 SLC4A8Q2Y0W8 1093 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 FAN1Q9Y2M0 1017 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 SMARCA4P51532 1647 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 IDEP14735 1019 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 HSPA1LP34931 641 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 TAF12Q16514 161 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 NEK11Q8NG66 645 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 EFCAB5A4FU69 1503 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 PPP1R2P41236 205 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 INPP1P49441 399 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 TMX1Q9H3N1 280 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 KCNK9Q9NPC2 374 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 BCAR3O75815 825 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 WHAMMP3Q1A5X7 153 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 UBL4BQ8N7F7 174 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 TMEM67Q5HYA8 995 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 TRERF1Q96PN7 1200 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 GOLGA6CA6NDK9 693 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 GOLGA6BA6NDN3 693 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 GOLGA6DP0CG33 693 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 MIER3Q7Z3K6 550 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 GOLGA6AQ9NYA3 693 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 PTPRCP08575 1304 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 VWA3BQ502W6 1294 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 NUTM2GQ5VZR2 741 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 CKAP2LQ8IYA6 745 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 NCOA7Q8NI08 942 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 STK24Q9Y6E0 443 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 PDCD2Q16342 344 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-210ENST00000409694 VPS18Q9P253 973 aa8.88□□□□□ -0.99
SYNE1-210ENST00000409694 GNAQP50148 359 aa8.87□□□□□ -0.99
SYNE1-210ENST00000409694 PLCB3Q01970 1234 aa8.87□□□□□ -0.99
SYNE1-210ENST00000409694 DUSP27Q5VZP5 1158 aa8.87□□□□□ -0.99
SYNE1-210ENST00000409694 RTEL1-TNFRSF6BF6WH68 1400 aa8.87□□□□□ -0.99
SYNE1-210ENST00000409694 AKNAQ7Z591 1439 aa8.87□□□□□ -0.99
SYNE1-210ENST00000409694 RTL9Q8NET4 1388 aa8.87□□□□□ -0.99
SYNE1-210ENST00000409694 KRT3P12035 628 aa8.87□□□□□ -0.99
SYNE1-210ENST00000409694 AMOTQ4VCS5 1084 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms