RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 PA2G4Q9UQ80 394 aaKnown RBP16.56■□□□□ 0.24
LIMS1-204ENST00000409441 BSDC1Q9NW68 430 aaPredicted RBP16.56■□□□□ 0.24
LIMS1-204ENST00000409441 KIF13BQ9NQT8 1826 aa16.55■□□□□ 0.24
LIMS1-204ENST00000409441 SURF6O75683 361 aaKnown RBP16.55■□□□□ 0.24
LIMS1-204ENST00000409441 PRPF40BQ6NWY9 871 aaKnown RBP16.55■□□□□ 0.24
LIMS1-204ENST00000409441 PUS3Q9BZE2 481 aaKnown RBP16.55■□□□□ 0.24
LIMS1-204ENST00000409441 SIL1Q9H173 461 aa16.55■□□□□ 0.24
LIMS1-204ENST00000409441 WWC3Q9ULE0 1092 aa16.55■□□□□ 0.24
LIMS1-204ENST00000409441 MYH3P11055 1940 aa16.55■□□□□ 0.24
LIMS1-204ENST00000409441 DALRD3Q5D0E6 543 aaKnown RBP16.54■□□□□ 0.24
LIMS1-204ENST00000409441 CNNM1Q9NRU3 951 aa16.54■□□□□ 0.24
LIMS1-204ENST00000409441 EYA2O00167 538 aa16.53■□□□□ 0.24
LIMS1-204ENST00000409441 PPEF1O14829 653 aaPredicted RBP16.53■□□□□ 0.24
LIMS1-204ENST00000409441 G3BP1Q13283 466 aaKnown RBP eCLIP16.53■□□□□ 0.24
LIMS1-204ENST00000409441 LRRC24Q50LG9 513 aa16.53■□□□□ 0.24
LIMS1-204ENST00000409441 TMC4Q7Z404 712 aa16.53■□□□□ 0.24
LIMS1-204ENST00000409441 RIPOR2Q9Y4F9 1068 aa16.53■□□□□ 0.24
LIMS1-204ENST00000409441 SP8Q8IXZ3 490 aa16.52■□□□□ 0.24
LIMS1-204ENST00000409441 DCTPP1Q9H773 170 aa16.52■□□□□ 0.24
LIMS1-204ENST00000409441 FBXO3Q9UK99 471 aa16.52■□□□□ 0.24
LIMS1-204ENST00000409441 ATP6V0A2Q9Y487 856 aa16.52■□□□□ 0.24
LIMS1-204ENST00000409441 CIAO1O76071 339 aa16.52■□□□□ 0.23
LIMS1-204ENST00000409441 ATG9AQ7Z3C6 839 aa16.52■□□□□ 0.23
LIMS1-204ENST00000409441 C7orf43Q8WVR3 580 aa16.52■□□□□ 0.23
LIMS1-204ENST00000409441 GCC1Q96CN9 775 aa16.52■□□□□ 0.23
LIMS1-204ENST00000409441 ZNF219Q9P2Y4 722 aaPredicted RBP16.52■□□□□ 0.23
LIMS1-204ENST00000409441 MINPP1Q9UNW1 487 aa16.52■□□□□ 0.23
LIMS1-204ENST00000409441 EXOC6BQ9Y2D4 811 aa16.52■□□□□ 0.23
LIMS1-204ENST00000409441 COL11A2P13942 1736 aaPredicted RBP16.51■□□□□ 0.23
LIMS1-204ENST00000409441 C21orf2O43822 256 aa16.51■□□□□ 0.23
LIMS1-204ENST00000409441 TMX4Q9H1E5 349 aaPredicted RBP16.51■□□□□ 0.23
LIMS1-204ENST00000409441 BCS1LQ9Y276 419 aa16.51■□□□□ 0.23
LIMS1-204ENST00000409441 COL4A1P02462 1669 aa16.51■□□□□ 0.23
LIMS1-204ENST00000409441 TAF1P21675 1872 aa16.51■□□□□ 0.23
LIMS1-204ENST00000409441 SRCAPQ6ZRS2 3230 aa16.51■□□□□ 0.23
LIMS1-204ENST00000409441 LRP5O75197 1615 aa16.5■□□□□ 0.23
LIMS1-204ENST00000409441 IL15P40933 162 aaPredicted RBP16.5■□□□□ 0.23
LIMS1-204ENST00000409441 NUCB1Q02818 461 aa16.5■□□□□ 0.23
LIMS1-204ENST00000409441 OS9Q13438 667 aaPredicted RBP16.5■□□□□ 0.23
LIMS1-204ENST00000409441 HSP90AB4PQ58FF6 505 aa16.5■□□□□ 0.23
LIMS1-204ENST00000409441 OLFM4Q6UX06 510 aa16.5■□□□□ 0.23
LIMS1-204ENST00000409441 SLC51AQ86UW1 340 aa16.5■□□□□ 0.23
LIMS1-204ENST00000409441 KIAA1551Q9HCM1 1747 aa16.49■□□□□ 0.23
LIMS1-204ENST00000409441 CHRNDQ07001 517 aa16.49■□□□□ 0.23
LIMS1-204ENST00000409441 HELBQ8NG08 1087 aaPredicted RBP16.49■□□□□ 0.23
LIMS1-204ENST00000409441 MROH5Q6ZUA9 1318 aa16.49■□□□□ 0.23
LIMS1-204ENST00000409441 APBB1O00213 710 aa16.48■□□□□ 0.23
LIMS1-204ENST00000409441 METTL24Q5JXM2 366 aa16.48■□□□□ 0.23
LIMS1-204ENST00000409441 CC2D2BQ6DHV5 1058 aa16.48■□□□□ 0.23
LIMS1-204ENST00000409441 ANKRD2Q9GZV1 360 aa16.48■□□□□ 0.23
LIMS1-204ENST00000409441 CEP126Q9P2H0 1117 aa16.48■□□□□ 0.23
LIMS1-204ENST00000409441 NSFL1CQ9UNZ2 370 aaKnown RBP16.48■□□□□ 0.23
LIMS1-204ENST00000409441 RAB11FIP3O75154 756 aa16.48■□□□□ 0.23
LIMS1-204ENST00000409441 TAF5LO75529 589 aa16.48■□□□□ 0.23
LIMS1-204ENST00000409441 SASH1O94885 1247 aa16.48■□□□□ 0.23
LIMS1-204ENST00000409441 GPSM2P81274 684 aa16.48■□□□□ 0.23
LIMS1-204ENST00000409441 ANKIB1Q9P2G1 1089 aa16.48■□□□□ 0.23
LIMS1-204ENST00000409441 SLX4Q8IY92 1834 aa16.47■□□□□ 0.23
LIMS1-204ENST00000409441 TFCP2Q12800 502 aa16.47■□□□□ 0.23
LIMS1-204ENST00000409441 ERC1Q8IUD2 1116 aa16.47■□□□□ 0.23
LIMS1-204ENST00000409441 UPF2Q9HAU5 1272 aaKnown RBP16.47■□□□□ 0.23
LIMS1-204ENST00000409441 PDE8BO95263 885 aa16.46■□□□□ 0.23
LIMS1-204ENST00000409441 CHD1LQ86WJ1 897 aa16.46■□□□□ 0.23
LIMS1-204ENST00000409441 MPNDQ8N594 471 aa16.46■□□□□ 0.23
LIMS1-204ENST00000409441 DLEC1Q9Y238 1755 aa16.46■□□□□ 0.23
LIMS1-204ENST00000409441 WTIPA6NIX2 430 aaPredicted RBP16.45■□□□□ 0.22
LIMS1-204ENST00000409441 GRIPAP1Q4V328 841 aa16.45■□□□□ 0.22
LIMS1-204ENST00000409441 SOGA3Q5TF21 947 aa16.45■□□□□ 0.22
LIMS1-204ENST00000409441 RTKN2Q8IZC4 609 aa16.45■□□□□ 0.22
LIMS1-204ENST00000409441 VGLL2Q8N8G2 317 aa16.45■□□□□ 0.22
LIMS1-204ENST00000409441 RHPN1Q8TCX5 695 aa16.45■□□□□ 0.22
LIMS1-204ENST00000409441 KIF1BPQ96EK5 621 aa16.45■□□□□ 0.22
LIMS1-204ENST00000409441 PODXL2Q9NZ53 605 aa16.45■□□□□ 0.22
LIMS1-204ENST00000409441 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.45■□□□□ 0.22
LIMS1-204ENST00000409441 XDHP47989 1333 aa16.45■□□□□ 0.22
LIMS1-204ENST00000409441 CCDC93Q567U6 631 aa16.45■□□□□ 0.22
LIMS1-204ENST00000409441 DPP8Q6V1X1 898 aaPredicted RBP16.45■□□□□ 0.22
LIMS1-204ENST00000409441 DAXXQ9UER7 740 aaPredicted RBP16.45■□□□□ 0.22
LIMS1-204ENST00000409441 SNAP23O00161 211 aa16.44■□□□□ 0.22
LIMS1-204ENST00000409441 ANKRD45Q5TZF3 282 aa16.44■□□□□ 0.22
LIMS1-204ENST00000409441 LRRCC1Q9C099 1032 aa16.44■□□□□ 0.22
LIMS1-204ENST00000409441 BCL11AQ9H165 835 aa16.44■□□□□ 0.22
LIMS1-204ENST00000409441 POLLQ9UGP5 575 aa16.44■□□□□ 0.22
LIMS1-204ENST00000409441 GGA1Q9UJY5 639 aa16.44■□□□□ 0.22
LIMS1-204ENST00000409441 LEMD3Q9Y2U8 911 aa16.44■□□□□ 0.22
LIMS1-204ENST00000409441 C6orf229H3BNL8 230 aa16.43■□□□□ 0.22
LIMS1-204ENST00000409441 SMARCA5O60264 1052 aaPredicted RBP16.43■□□□□ 0.22
LIMS1-204ENST00000409441 YBX3P16989 372 aaKnown RBP eCLIP16.43■□□□□ 0.225e-7■□□□□ 9.2
LIMS1-204ENST00000409441 ATP2B4P23634 1241 aa16.43■□□□□ 0.22
LIMS1-204ENST00000409441 KCNJ4P48050 445 aa16.43■□□□□ 0.22
LIMS1-204ENST00000409441 GPR162Q16538 588 aa16.43■□□□□ 0.22
LIMS1-204ENST00000409441 TBC1D16Q8TBP0 767 aa16.43■□□□□ 0.22
LIMS1-204ENST00000409441 IL1RAPL2Q9NP60 686 aa16.43■□□□□ 0.22
LIMS1-204ENST00000409441 AKAP2Q9Y2D5 859 aa16.43■□□□□ 0.22
LIMS1-204ENST00000409441 ZNF804BA4D1E1 1349 aa16.43■□□□□ 0.22
LIMS1-204ENST00000409441 UFL1O94874 794 aa16.42■□□□□ 0.22
LIMS1-204ENST00000409441 SEC24BO95487 1268 aa16.42■□□□□ 0.22
LIMS1-204ENST00000409441 TIMM10P62072 90 aa16.42■□□□□ 0.22
LIMS1-204ENST00000409441 UBE4AQ14139 1066 aa16.42■□□□□ 0.22
LIMS1-204ENST00000409441 PUM3Q15397 648 aaKnown RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms