RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 TBC1D12O60347 775 aa11.63□□□□□ -0.55
PTCHD4-202ENST00000398738 GUCY1B3Q02153 619 aa11.63□□□□□ -0.55
PTCHD4-202ENST00000398738 PI4KAP1Q8N8J0 262 aa11.63□□□□□ -0.55
PTCHD4-202ENST00000398738 LEO1Q8WVC0 666 aaPredicted RBP11.63□□□□□ -0.55
PTCHD4-202ENST00000398738 NEXMIFQ5QGS0 1516 aa11.63□□□□□ -0.55
PTCHD4-202ENST00000398738 VPS53Q5VIR6 699 aa11.63□□□□□ -0.55
PTCHD4-202ENST00000398738 CREB3L3Q68CJ9 461 aa11.63□□□□□ -0.55
PTCHD4-202ENST00000398738 FBXO38Q6PIJ6 1188 aa11.63□□□□□ -0.55
PTCHD4-202ENST00000398738 AACSQ86V21 672 aa11.63□□□□□ -0.55
PTCHD4-202ENST00000398738 KRT222Q8N1A0 295 aa11.63□□□□□ -0.55
PTCHD4-202ENST00000398738 BEGAINQ9BUH8 593 aa11.63□□□□□ -0.55
PTCHD4-202ENST00000398738 NEURL4Q96JN8 1562 aa11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 CPSF1Q10570 1443 aaKnown RBP11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 BLOC1S2Q6QNY1 142 aa11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 C11orf57Q6ZUT1 292 aaPredicted RBP11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 SSH3Q8TE77 659 aa11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 EDC3Q96F86 508 aaKnown RBP11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 ZSCAN31Q96LW9 406 aaPredicted RBP11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 PAXBP1Q9Y5B6 917 aa11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 NDUFB9Q9Y6M9 179 aa11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 MAP2P11137 1827 aaKnown RBP11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 CCDC69A6NI79 296 aa11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 POTEB2H3BUK9 544 aa11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 PGBD1Q96JS3 809 aa11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 SH2B1Q9NRF2 756 aaPredicted RBP11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 TMEM51Q9NW97 253 aa11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 CLTCQ00610 1675 aaKnown RBP11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 SSH2Q76I76 1423 aa11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 POLR3GO15318 223 aaPredicted RBP11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 GLRX3O76003 335 aaKnown RBP11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 TERF2Q15554 542 aa11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 IER5LQ5T953 404 aa11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 EYA1Q99502 592 aa11.62□□□□□ -0.55
PTCHD4-202ENST00000398738 NMIQ13287 307 aaPredicted RBP11.61□□□□□ -0.55
PTCHD4-202ENST00000398738 ERCC6LQ2NKX8 1250 aa11.61□□□□□ -0.55
PTCHD4-202ENST00000398738 LRRC8AQ8IWT6 810 aa11.61□□□□□ -0.55
PTCHD4-202ENST00000398738 PTCD2Q8WV60 388 aaKnown RBP11.61□□□□□ -0.55
PTCHD4-202ENST00000398738 ZSWIM6Q9HCJ5 1215 aa11.61□□□□□ -0.55
PTCHD4-202ENST00000398738 C9orf78Q9NZ63 289 aaPredicted RBP11.61□□□□□ -0.55
PTCHD4-202ENST00000398738 ACEP12821 1306 aa11.61□□□□□ -0.55
PTCHD4-202ENST00000398738 EDC4Q6P2E9 1401 aaKnown RBP11.61□□□□□ -0.55
PTCHD4-202ENST00000398738 PTGER2P43116 358 aa11.61□□□□□ -0.55
PTCHD4-202ENST00000398738 FAM177A1Q8N128 213 aaPredicted RBP11.61□□□□□ -0.55
PTCHD4-202ENST00000398738 FSD1Q9BTV5 496 aa11.61□□□□□ -0.55
PTCHD4-202ENST00000398738 SCAND2PQ9GZW5 306 aaPredicted RBP11.61□□□□□ -0.55
PTCHD4-202ENST00000398738 TTC21BQ7Z4L5 1316 aa11.61□□□□□ -0.55
PTCHD4-202ENST00000398738 ISM2Q6H9L7 571 aa11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 PLA2G4DQ86XP0 818 aa11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 BRF1Q92994 677 aa11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 CLSTN2Q9H4D0 955 aa11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 CPS1P31327 1500 aa11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 CHGBP05060 677 aa11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 PTPN21Q16825 1174 aa11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 METTL3Q86U44 580 aaKnown RBP11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 KLHDC4Q8TBB5 520 aa11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 TMX1Q9H3N1 280 aa11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 DDX19AQ9NUU7 478 aaKnown RBP11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 CHPF2Q9P2E5 772 aa11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 PRR36Q9H6K5 1346 aa11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 LMTK2Q8IWU2 1503 aa11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 BIN1O00499 593 aa11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 PDCP20941 246 aa11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 HOMER1Q86YM7 354 aa11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 CCDC82Q8N4S0 544 aa11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 LRRN4CLQ8ND94 238 aa11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 ZNF397Q8NF99 534 aaPredicted RBP11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 ECHDC1Q9NTX5 307 aa11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 FAM198AQ9UFP1 575 aa11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 CRB1P82279 1406 aa11.6□□□□□ -0.55
PTCHD4-202ENST00000398738 CDK12Q9NYV4 1490 aaPredicted RBP11.59□□□□□ -0.55
PTCHD4-202ENST00000398738 CCDC171Q6TFL3 1326 aa11.59□□□□□ -0.55
PTCHD4-202ENST00000398738 NPHP3Q7Z494 1330 aa11.59□□□□□ -0.55
PTCHD4-202ENST00000398738 SLC27A2O14975 620 aa11.59□□□□□ -0.55
PTCHD4-202ENST00000398738 SMC2O95347 1197 aa11.59□□□□□ -0.55
PTCHD4-202ENST00000398738 GABPB1Q06547 395 aaPredicted RBP11.59□□□□□ -0.55
PTCHD4-202ENST00000398738 SYT10Q6XYQ8 523 aa11.59□□□□□ -0.55
PTCHD4-202ENST00000398738 IL17REQ8NFR9 667 aa11.59□□□□□ -0.55
PTCHD4-202ENST00000398738 AIMP1Q12904 312 aaKnown RBP11.59□□□□□ -0.55
PTCHD4-202ENST00000398738 AOPEPQ8N6M6 819 aa11.59□□□□□ -0.55
PTCHD4-202ENST00000398738 A0A0D9SFI3 127 aa11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 GNAT3A8MTJ3 354 aa11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 SMAPO00193 183 aa11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 KCNQ3O43525 872 aa11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 RBM6P78332 1123 aaKnown RBP11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 TDRD7Q8NHU6 1098 aaKnown RBP11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 CHMP4AQ9BY43 222 aa11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 MORC2Q9Y6X9 1032 aaPredicted RBP11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 ZNF142P52746 1687 aaPredicted RBP11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 PREX1Q8TCU6 1659 aa11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 SSTR3P32745 418 aaPredicted RBP11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 NECTIN1Q15223 517 aa11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 CWF19L2Q2TBE0 894 aaKnown RBP11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 CCAR1Q8IX12 1150 aaKnown RBP11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 NGDNQ8NEJ9 315 aaKnown RBP11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 AATKQ6ZMQ8 1374 aa11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 CCT2P78371 535 aaKnown RBP11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 GPATCH3Q96I76 525 aa11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 SDF4Q9BRK5 362 aa11.58□□□□□ -0.56
PTCHD4-202ENST00000398738 ADAM33Q9BZ11 813 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms