RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 CEP57Q86XR8 500 aa11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 MYO1BO43795 1136 aa11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 ZPR1O75312 459 aa11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 ALDH1L1O75891 902 aa11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 MSL1Q68DK7 614 aa11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 MRPL50Q8N5N7 158 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 KRT23Q9C075 422 aa11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 ANKIB1Q9P2G1 1089 aa11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 CUL7Q14999 1698 aa11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 NUTM2BA6NNL0 878 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 NUTM2EB1AL46 878 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 WTAPQ15007 396 aa11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 NUTM2AQ8IVF1 878 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 DDX12PQ92771 950 aa11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 CDC5LQ99459 802 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 SYT1P21579 422 aa11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 CCDC155Q8N6L0 562 aa11.69□□□□□ -0.54
LIMCH1-203ENST00000396595 PARD3Q8TEW0 1356 aa11.68□□□□□ -0.54
LIMCH1-203ENST00000396595 OPA1O60313 960 aa11.68□□□□□ -0.54
LIMCH1-203ENST00000396595 DDX46Q7L014 1031 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-203ENST00000396595 CCDC94Q9BW85 323 aaPredicted RBP11.68□□□□□ -0.54
LIMCH1-203ENST00000396595 IDI1Q13907 227 aa11.68□□□□□ -0.54
LIMCH1-203ENST00000396595 MCMDC2Q4G0Z9 681 aa11.68□□□□□ -0.54
LIMCH1-203ENST00000396595 IFNL2Q8IZJ0 200 aa11.68□□□□□ -0.54
LIMCH1-203ENST00000396595 GOLGA1Q92805 767 aa11.68□□□□□ -0.54
LIMCH1-203ENST00000396595 PLVAPQ9BX97 442 aa11.68□□□□□ -0.54
LIMCH1-203ENST00000396595 KIAA0753Q2KHM9 967 aa11.68□□□□□ -0.54
LIMCH1-203ENST00000396595 SPTY2D1Q68D10 685 aaPredicted RBP11.68□□□□□ -0.54
LIMCH1-203ENST00000396595 SEPT14Q6ZU15 432 aa11.68□□□□□ -0.54
LIMCH1-203ENST00000396595 RAB11FIP4Q86YS3 637 aa11.68□□□□□ -0.54
LIMCH1-203ENST00000396595 CNNM2Q9H8M5 875 aa11.68□□□□□ -0.54
LIMCH1-203ENST00000396595 PIP4K2BP78356 416 aa11.68□□□□□ -0.54
LIMCH1-203ENST00000396595 MCM6Q14566 821 aa11.68□□□□□ -0.54
LIMCH1-203ENST00000396595 CCDC6Q16204 474 aa11.68□□□□□ -0.54
LIMCH1-203ENST00000396595 PSMA7O14818 248 aa11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 TACC1O75410 805 aa11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 BAG3O95817 575 aa11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 TUBBP07437 444 aa11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 SPAG5Q96R06 1193 aa11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 ATP5J2-PTCD1G3V325 749 aa11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 PRC1O43663 620 aa11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 SNRPA1P09661 255 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 DCTPP1Q9H773 170 aa11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 ADGRL1O94910 1474 aa11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 CTAGE9A4FU28 777 aa11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 TCEANC2Q96MN5 208 aa11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 RTL1A6NKG5 1358 aa11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 POLR3AO14802 1390 aaPredicted RBP11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 PPFIA3O75145 1194 aa11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 ANKRD13DQ6ZTN6 518 aa11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 Q6ZUG5 572 aa11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 DDX23Q9BUQ8 820 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 AMOTL2Q9Y2J4 779 aa11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 TTC41PQ6P2S7 1318 aa11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 SPTLC2O15270 562 aa11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 RTN1Q16799 776 aa11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 NSRP1Q9H0G5 558 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 RNF216Q9NWF9 866 aaPredicted RBP11.67□□□□□ -0.54
LIMCH1-203ENST00000396595 GPTP24298 496 aa11.66□□□□□ -0.54
LIMCH1-203ENST00000396595 STAT6P42226 847 aa11.66□□□□□ -0.54
LIMCH1-203ENST00000396595 LRCH2Q5VUJ6 765 aa11.66□□□□□ -0.54
LIMCH1-203ENST00000396595 SELENOOQ9BVL4 669 aa11.66□□□□□ -0.54
LIMCH1-203ENST00000396595 PLB1Q6P1J6 1458 aa11.66□□□□□ -0.54
LIMCH1-203ENST00000396595 AFMP43652 599 aa11.66□□□□□ -0.54
LIMCH1-203ENST00000396595 KRT83P78385 493 aa11.66□□□□□ -0.54
LIMCH1-203ENST00000396595 C10orf67Q8IYJ2 551 aa11.66□□□□□ -0.54
LIMCH1-203ENST00000396595 FBF1Q8TES7 1133 aa11.66□□□□□ -0.54
LIMCH1-203ENST00000396595 NUP160Q12769 1436 aa11.66□□□□□ -0.54
LIMCH1-203ENST00000396595 ESR2Q92731 530 aa11.66□□□□□ -0.54
LIMCH1-203ENST00000396595 LRRC2Q9BYS8 371 aa11.66□□□□□ -0.54
LIMCH1-203ENST00000396595 TBCAO75347 108 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-203ENST00000396595 GNAQP50148 359 aa11.65□□□□□ -0.54
LIMCH1-203ENST00000396595 CRNKL1Q9BZJ0 848 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-203ENST00000396595 NOL3O60936 208 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-203ENST00000396595 LMOD1P29536 600 aaPredicted RBP11.65□□□□□ -0.54
LIMCH1-203ENST00000396595 SYCP3Q8IZU3 236 aa11.65□□□□□ -0.54
LIMCH1-203ENST00000396595 KRT86O43790 486 aa11.65□□□□□ -0.54
LIMCH1-203ENST00000396595 PRPHP41219 470 aa11.65□□□□□ -0.54
LIMCH1-203ENST00000396595 GRM8O00222 908 aa11.65□□□□□ -0.54
LIMCH1-203ENST00000396595 ERMNQ8TAM6 284 aa11.65□□□□□ -0.54
LIMCH1-203ENST00000396595 FEZ1Q99689 392 aa11.65□□□□□ -0.54
LIMCH1-203ENST00000396595 HOMER2Q9NSB8 354 aa11.65□□□□□ -0.54
LIMCH1-203ENST00000396595 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.65□□□□□ -0.54
LIMCH1-203ENST00000396595 V9GYY5 206 aaPredicted RBP11.65□□□□□ -0.54
LIMCH1-203ENST00000396595 CD109Q6YHK3 1445 aa11.65□□□□□ -0.54
LIMCH1-203ENST00000396595 TRIM75PA6NK02 468 aa11.64□□□□□ -0.55
LIMCH1-203ENST00000396595 PTGS1P23219 599 aa11.64□□□□□ -0.55
LIMCH1-203ENST00000396595 AK2P54819 239 aa11.64□□□□□ -0.55
LIMCH1-203ENST00000396595 KIF5AQ12840 1032 aa11.64□□□□□ -0.55
LIMCH1-203ENST00000396595 TBC1D5Q92609 795 aa11.64□□□□□ -0.55
LIMCH1-203ENST00000396595 SCLT1Q96NL6 688 aa11.64□□□□□ -0.55
LIMCH1-203ENST00000396595 VAT1LQ9HCJ6 419 aa11.64□□□□□ -0.55
LIMCH1-203ENST00000396595 FOXO3O43524 673 aa11.64□□□□□ -0.55
LIMCH1-203ENST00000396595 CAPN2P17655 700 aa11.64□□□□□ -0.55
LIMCH1-203ENST00000396595 ACTN2P35609 894 aa11.64□□□□□ -0.55
LIMCH1-203ENST00000396595 IL15P40933 162 aaPredicted RBP11.64□□□□□ -0.55
LIMCH1-203ENST00000396595 C8orf58Q8NAV2 365 aa11.64□□□□□ -0.55
LIMCH1-203ENST00000396595 DRC1Q96MC2 740 aa11.64□□□□□ -0.55
LIMCH1-203ENST00000396595 ANXA1P04083 346 aa11.64□□□□□ -0.55
LIMCH1-203ENST00000396595 MARCKSP29966 332 aaPredicted RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms