RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 GNRH1P01148 92 aa9.78□□□□□ -0.84
LIMS1-203ENST00000393310 SLC39A6Q13433 755 aa9.78□□□□□ -0.84
LIMS1-203ENST00000393310 EIF4A2Q14240 407 aaKnown RBP9.78□□□□□ -0.84
LIMS1-203ENST00000393310 PPP4R3BQ5MIZ7 849 aa9.78□□□□□ -0.84
LIMS1-203ENST00000393310 FCGRTP55899 365 aa9.78□□□□□ -0.84
LIMS1-203ENST00000393310 FBXO46Q6PJ61 603 aaPredicted RBP9.78□□□□□ -0.84
LIMS1-203ENST00000393310 TCEAL9Q9UHQ7 104 aa9.78□□□□□ -0.84
LIMS1-203ENST00000393310 PPP2R3BQ9Y5P8 575 aa9.78□□□□□ -0.84
LIMS1-203ENST00000393310 BCL9O00512 1426 aa9.78□□□□□ -0.84
LIMS1-203ENST00000393310 RPS8P62241 208 aaKnown RBP9.77□□□□□ -0.84
LIMS1-203ENST00000393310 NRDCO43847 1150 aa9.77□□□□□ -0.85
LIMS1-203ENST00000393310 TPM2P07951 284 aa9.77□□□□□ -0.85
LIMS1-203ENST00000393310 RIPK4P57078 832 aa9.77□□□□□ -0.85
LIMS1-203ENST00000393310 AXIN2Q9Y2T1 843 aa9.77□□□□□ -0.85
LIMS1-203ENST00000393310 ZBTB12Q9Y330 459 aaPredicted RBP9.77□□□□□ -0.85
LIMS1-203ENST00000393310 USP17L3A6NCW0 530 aa9.77□□□□□ -0.85
LIMS1-203ENST00000393310 USP17L4A6NCW7 530 aa9.77□□□□□ -0.85
LIMS1-203ENST00000393310 PRKG1Q13976 671 aa9.77□□□□□ -0.85
LIMS1-203ENST00000393310 BMS1Q14692 1282 aaKnown RBP9.77□□□□□ -0.85
LIMS1-203ENST00000393310 USP17L1Q7RTZ2 530 aa9.77□□□□□ -0.85
LIMS1-203ENST00000393310 PODNQ7Z5L7 613 aa9.77□□□□□ -0.85
LIMS1-203ENST00000393310 SP8Q8IXZ3 490 aa9.77□□□□□ -0.85
LIMS1-203ENST00000393310 PDCL3Q9H2J4 239 aa9.77□□□□□ -0.85
LIMS1-203ENST00000393310 BABAM1Q9NWV8 329 aa9.77□□□□□ -0.85
LIMS1-203ENST00000393310 SAGE1Q9NXZ1 904 aa9.77□□□□□ -0.85
LIMS1-203ENST00000393310 SPATA31E1Q6ZUB1 1445 aa9.77□□□□□ -0.85
LIMS1-203ENST00000393310 CCDC66A2RUB6 948 aa9.77□□□□□ -0.85
LIMS1-203ENST00000393310 GTPBP6O43824 516 aaPredicted RBP9.77□□□□□ -0.85
LIMS1-203ENST00000393310 CHAF1AQ13111 956 aaPredicted RBP9.77□□□□□ -0.85
LIMS1-203ENST00000393310 FOXD4L5Q5VV16 416 aaPredicted RBP9.77□□□□□ -0.85
LIMS1-203ENST00000393310 TRMT44Q8IYL2 757 aaKnown RBP9.77□□□□□ -0.85
LIMS1-203ENST00000393310 FOXD4L4Q8WXT5 416 aaPredicted RBP9.77□□□□□ -0.85
LIMS1-203ENST00000393310 PPP2R3CQ969Q6 453 aa9.77□□□□□ -0.85
LIMS1-203ENST00000393310 GPATCH3Q96I76 525 aa9.77□□□□□ -0.85
LIMS1-203ENST00000393310 SH2D4AQ9H788 454 aa9.77□□□□□ -0.85
LIMS1-203ENST00000393310 KDM4AO75164 1064 aa9.76□□□□□ -0.85
LIMS1-203ENST00000393310 CETPP11597 493 aa9.76□□□□□ -0.85
LIMS1-203ENST00000393310 PLCG2P16885 1265 aa9.76□□□□□ -0.85
LIMS1-203ENST00000393310 FKBP5Q13451 457 aaPredicted RBP9.76□□□□□ -0.85
LIMS1-203ENST00000393310 NKX1-1Q15270 411 aaPredicted RBP9.76□□□□□ -0.85
LIMS1-203ENST00000393310 DZIP1Q86YF9 867 aaKnown RBP9.76□□□□□ -0.85
LIMS1-203ENST00000393310 GTF3C2Q8WUA4 911 aaPredicted RBP9.76□□□□□ -0.85
LIMS1-203ENST00000393310 DPF2Q92785 391 aa9.76□□□□□ -0.85
LIMS1-203ENST00000393310 TSPYL1Q9H0U9 437 aa9.76□□□□□ -0.85
LIMS1-203ENST00000393310 ZNF287Q9HBT7 754 aa9.76□□□□□ -0.85
LIMS1-203ENST00000393310 LTBP3Q9NS15 1303 aa9.76□□□□□ -0.85
LIMS1-203ENST00000393310 GOLIM4O00461 696 aa9.76□□□□□ -0.85
LIMS1-203ENST00000393310 EVI5O60447 810 aa9.76□□□□□ -0.85
LIMS1-203ENST00000393310 BAG3O95817 575 aa9.76□□□□□ -0.85
LIMS1-203ENST00000393310 YBX3P16989 372 aaKnown RBP eCLIP9.76□□□□□ -0.853e-7■■□□□ 13.4
LIMS1-203ENST00000393310 CCDC27Q2M243 656 aa9.76□□□□□ -0.85
LIMS1-203ENST00000393310 AAK1Q2M2I8 961 aa9.76□□□□□ -0.85
LIMS1-203ENST00000393310 MICALL2Q8IY33 904 aa9.76□□□□□ -0.85
LIMS1-203ENST00000393310 LINC00116Q8NCU8 138 aa9.76□□□□□ -0.85
LIMS1-203ENST00000393310 PARK7Q99497 189 aaKnown RBP9.76□□□□□ -0.85
LIMS1-203ENST00000393310 ZBTB1Q9Y2K1 713 aa9.76□□□□□ -0.85
LIMS1-203ENST00000393310 SLC3A2P08195 630 aaKnown RBP9.76□□□□□ -0.85
LIMS1-203ENST00000393310 SLC5A1P13866 664 aa9.76□□□□□ -0.85
LIMS1-203ENST00000393310 GMPSP49915 693 aaPredicted RBP9.76□□□□□ -0.85
LIMS1-203ENST00000393310 FASTKD5Q7L8L6 764 aaKnown RBP9.76□□□□□ -0.85
LIMS1-203ENST00000393310 ZNF771Q7L3S4 317 aaPredicted RBP9.75□□□□□ -0.85
LIMS1-203ENST00000393310 GTF2A2P52657 109 aa9.75□□□□□ -0.85
LIMS1-203ENST00000393310 CCDC129Q6ZRS4 1044 aa9.75□□□□□ -0.85
LIMS1-203ENST00000393310 AGBL3Q8NEM8 1001 aa9.75□□□□□ -0.85
LIMS1-203ENST00000393310 KIF3CO14782 793 aa9.75□□□□□ -0.85
LIMS1-203ENST00000393310 LPXNO60711 386 aa9.75□□□□□ -0.85
LIMS1-203ENST00000393310 TBC1D10BQ4KMP7 808 aaPredicted RBP9.75□□□□□ -0.85
LIMS1-203ENST00000393310 LEMD3Q9Y2U8 911 aa9.75□□□□□ -0.85
LIMS1-203ENST00000393310 PRAG1Q86YV5 1406 aa9.75□□□□□ -0.85
LIMS1-203ENST00000393310 MFSD14CQ5VZR4 134 aa9.75□□□□□ -0.85
LIMS1-203ENST00000393310 VEGFBP49765 207 aa9.74□□□□□ -0.85
LIMS1-203ENST00000393310 GRAPQ13588 217 aa9.74□□□□□ -0.85
LIMS1-203ENST00000393310 CYP4F22Q6NT55 531 aa9.74□□□□□ -0.85
LIMS1-203ENST00000393310 GRAPLQ8TC17 118 aaPredicted RBP9.74□□□□□ -0.85
LIMS1-203ENST00000393310 SPDYE4A6NLX3 237 aa9.74□□□□□ -0.85
LIMS1-203ENST00000393310 XDHP47989 1333 aa9.74□□□□□ -0.85
LIMS1-203ENST00000393310 KIF28PB7ZC32 967 aa9.74□□□□□ -0.85
LIMS1-203ENST00000393310 ANKRD13AQ8IZ07 590 aa9.74□□□□□ -0.85
LIMS1-203ENST00000393310 IRS4O14654 1257 aaPredicted RBP9.73□□□□□ -0.85
LIMS1-203ENST00000393310 TLR3O15455 904 aaKnown RBP9.73□□□□□ -0.85
LIMS1-203ENST00000393310 HSPA5P11021 654 aaKnown RBP9.73□□□□□ -0.85
LIMS1-203ENST00000393310 IKQ13123 557 aaPredicted RBP9.73□□□□□ -0.85
LIMS1-203ENST00000393310 CEP126Q9P2H0 1117 aa9.73□□□□□ -0.85
LIMS1-203ENST00000393310 SOX10P56693 466 aa9.73□□□□□ -0.85
LIMS1-203ENST00000393310 KIF23Q02241 960 aaPredicted RBP9.73□□□□□ -0.85
LIMS1-203ENST00000393310 BANK1Q8NDB2 785 aa9.73□□□□□ -0.85
LIMS1-203ENST00000393310 DCDC2CA8MYV0 355 aa9.73□□□□□ -0.85
LIMS1-203ENST00000393310 ZEB2O60315 1214 aa9.73□□□□□ -0.85
LIMS1-203ENST00000393310 HHIPL1Q96JK4 782 aa9.73□□□□□ -0.85
LIMS1-203ENST00000393310 GAS2L1Q99501 681 aaPredicted RBP9.73□□□□□ -0.85
LIMS1-203ENST00000393310 MCOLN1Q9GZU1 580 aa9.73□□□□□ -0.85
LIMS1-203ENST00000393310 TNPO2O14787 897 aaKnown RBP9.72□□□□□ -0.85
LIMS1-203ENST00000393310 CYP27B1O15528 508 aa9.72□□□□□ -0.85
LIMS1-203ENST00000393310 SNAPC2Q13487 334 aa9.72□□□□□ -0.85
LIMS1-203ENST00000393310 PRR5LQ6MZQ0 368 aa9.72□□□□□ -0.85
LIMS1-203ENST00000393310 SLC4A10Q6U841 1118 aa9.72□□□□□ -0.85
LIMS1-203ENST00000393310 SP3Q02447 781 aa9.72□□□□□ -0.85
LIMS1-203ENST00000393310 JMYQ8N9B5 988 aa9.72□□□□□ -0.85
LIMS1-203ENST00000393310 NOD1Q9Y239 953 aa9.72□□□□□ -0.85
LIMS1-203ENST00000393310 NBPF20Q3BBV1 942 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms