RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 KIAA1551Q9HCM1 1747 aa12.59□□□□□ -0.39
VPS53-202ENST00000389040 PSMD1Q99460 953 aa12.58□□□□□ -0.39
VPS53-202ENST00000389040 C1orf115Q9H7X2 142 aa12.58□□□□□ -0.39
VPS53-202ENST00000389040 LAMB2P55268 1798 aa12.58□□□□□ -0.39
VPS53-202ENST00000389040 C21orf2O43822 256 aa12.58□□□□□ -0.4
VPS53-202ENST00000389040 YBX3P16989 372 aaKnown RBP eCLIP12.58□□□□□ -0.4
VPS53-202ENST00000389040 NUCB1Q02818 461 aa12.58□□□□□ -0.4
VPS53-202ENST00000389040 TAF7LQ5H9L4 462 aa12.58□□□□□ -0.4
VPS53-202ENST00000389040 RPAP2Q8IXW5 612 aaPredicted RBP12.58□□□□□ -0.4
VPS53-202ENST00000389040 SUPT20HQ8NEM7 779 aa12.58□□□□□ -0.4
VPS53-202ENST00000389040 CELF1Q92879 486 aaKnown RBP12.58□□□□□ -0.4
VPS53-202ENST00000389040 ANKRD2Q9GZV1 360 aa12.58□□□□□ -0.4
VPS53-202ENST00000389040 PODXL2Q9NZ53 605 aa12.58□□□□□ -0.4
VPS53-202ENST00000389040 CHMP3Q9Y3E7 222 aa12.58□□□□□ -0.4
VPS53-202ENST00000389040 DDX60Q8IY21 1712 aaKnown RBP12.58□□□□□ -0.4
VPS53-202ENST00000389040 TNRC6CQ9HCJ0 1690 aaKnown RBP12.57□□□□□ -0.4
VPS53-202ENST00000389040 RTFDC1Q9BY42 306 aaPredicted RBP12.57□□□□□ -0.4
VPS53-202ENST00000389040 SEC31BQ9NQW1 1179 aa12.57□□□□□ -0.4
VPS53-202ENST00000389040 DLEC1Q9Y238 1755 aa12.57□□□□□ -0.4
VPS53-202ENST00000389040 ATP8B2P98198 1209 aa12.56□□□□□ -0.4
VPS53-202ENST00000389040 LDHAL6AQ6ZMR3 332 aa12.56□□□□□ -0.4
VPS53-202ENST00000389040 GCC1Q96CN9 775 aa12.56□□□□□ -0.4
VPS53-202ENST00000389040 COPRSQ9NQ92 184 aa12.56□□□□□ -0.4
VPS53-202ENST00000389040 CIAO1O76071 339 aa12.56□□□□□ -0.4
VPS53-202ENST00000389040 SEC24BO95487 1268 aa12.56□□□□□ -0.4
VPS53-202ENST00000389040 SRGAP3O43295 1099 aa12.55□□□□□ -0.4
VPS53-202ENST00000389040 FKBP4Q02790 459 aaKnown RBP eCLIP12.55□□□□□ -0.4
VPS53-202ENST00000389040 ARHGAP27Q6ZUM4 889 aa12.55□□□□□ -0.4
VPS53-202ENST00000389040 CHD1LQ86WJ1 897 aa12.55□□□□□ -0.4
VPS53-202ENST00000389040 MPNDQ8N594 471 aa12.55□□□□□ -0.4
VPS53-202ENST00000389040 CCDC85AQ96PX6 553 aaPredicted RBP12.55□□□□□ -0.4
VPS53-202ENST00000389040 TAOK3Q9H2K8 898 aa12.55□□□□□ -0.4
VPS53-202ENST00000389040 MINPP1Q9UNW1 487 aa12.55□□□□□ -0.4
VPS53-202ENST00000389040 MROH5Q6ZUA9 1318 aa12.55□□□□□ -0.4
VPS53-202ENST00000389040 HMMRO75330 724 aa12.54□□□□□ -0.4
VPS53-202ENST00000389040 DPP8Q6V1X1 898 aaPredicted RBP12.54□□□□□ -0.4
VPS53-202ENST00000389040 SIRT2Q8IXJ6 389 aa12.54□□□□□ -0.4
VPS53-202ENST00000389040 SSH3Q8TE77 659 aa12.54□□□□□ -0.4
VPS53-202ENST00000389040 LEMD3Q9Y2U8 911 aa12.54□□□□□ -0.4
VPS53-202ENST00000389040 XDHP47989 1333 aa12.54□□□□□ -0.4
VPS53-202ENST00000389040 BRCA1P38398 1863 aaKnown RBP12.54□□□□□ -0.4
VPS53-202ENST00000389040 LMNB1P20700 586 aa12.54□□□□□ -0.4
VPS53-202ENST00000389040 ATP2B4P23634 1241 aa12.54□□□□□ -0.4
VPS53-202ENST00000389040 RFX5P48382 616 aaPredicted RBP12.54□□□□□ -0.4
VPS53-202ENST00000389040 PTPN12Q05209 780 aaKnown RBP12.54□□□□□ -0.4
VPS53-202ENST00000389040 POLA2Q14181 598 aa12.54□□□□□ -0.4
VPS53-202ENST00000389040 EYA3Q99504 573 aa12.54□□□□□ -0.4
VPS53-202ENST00000389040 CNNM1Q9NRU3 951 aa12.54□□□□□ -0.4
VPS53-202ENST00000389040 RIPOR2Q9Y4F9 1068 aa12.54□□□□□ -0.4
VPS53-202ENST00000389040 COL11A2P13942 1736 aaPredicted RBP12.54□□□□□ -0.4
VPS53-202ENST00000389040 ZC3H4Q9UPT8 1303 aaKnown RBP12.54□□□□□ -0.4
VPS53-202ENST00000389040 CEP85Q6P2H3 762 aa12.53□□□□□ -0.4
VPS53-202ENST00000389040 LNPKQ9C0E8 428 aa12.53□□□□□ -0.4
VPS53-202ENST00000389040 UPF2Q9HAU5 1272 aaKnown RBP12.53□□□□□ -0.4
VPS53-202ENST00000389040 ANKIB1Q9P2G1 1089 aa12.53□□□□□ -0.4
VPS53-202ENST00000389040 NSFL1CQ9UNZ2 370 aaKnown RBP12.53□□□□□ -0.4
VPS53-202ENST00000389040 SNED1Q8TER0 1413 aa12.53□□□□□ -0.4
VPS53-202ENST00000389040 EYA2O00167 538 aa12.52□□□□□ -0.4
VPS53-202ENST00000389040 IL15P40933 162 aaPredicted RBP12.52□□□□□ -0.4
VPS53-202ENST00000389040 HSP90AB4PQ58FF6 505 aa12.52□□□□□ -0.4
VPS53-202ENST00000389040 GGA1Q9UJY5 639 aa12.52□□□□□ -0.4
VPS53-202ENST00000389040 NFKBIEO00221 500 aa12.52□□□□□ -0.41
VPS53-202ENST00000389040 ANKRD45Q5TZF3 282 aa12.52□□□□□ -0.41
VPS53-202ENST00000389040 DAXXQ9UER7 740 aaPredicted RBP12.52□□□□□ -0.41
VPS53-202ENST00000389040 GOLGB1Q14789 3259 aaKnown RBP12.52□□□□□ -0.41
VPS53-202ENST00000389040 ARFGEF1Q9Y6D6 1849 aa12.51□□□□□ -0.41
VPS53-202ENST00000389040 CHRNDQ07001 517 aa12.51□□□□□ -0.41
VPS53-202ENST00000389040 UBE4AQ14139 1066 aa12.51□□□□□ -0.41
VPS53-202ENST00000389040 C15orf52Q6ZUT6 534 aaKnown RBP12.51□□□□□ -0.41
VPS53-202ENST00000389040 WWC3Q9ULE0 1092 aa12.51□□□□□ -0.41
VPS53-202ENST00000389040 MYH3P11055 1940 aa12.51□□□□□ -0.41
VPS53-202ENST00000389040 SLX4Q8IY92 1834 aa12.51□□□□□ -0.41
VPS53-202ENST00000389040 GPSM2P81274 684 aa12.5□□□□□ -0.41
VPS53-202ENST00000389040 TBC1D16Q8TBP0 767 aa12.5□□□□□ -0.41
VPS53-202ENST00000389040 ZNF219Q9P2Y4 722 aaPredicted RBP12.5□□□□□ -0.41
VPS53-202ENST00000389040 PNMA6EA0A0J9YXQ4 647 aa12.5□□□□□ -0.41
VPS53-202ENST00000389040 PDE8BO95263 885 aa12.5□□□□□ -0.41
VPS53-202ENST00000389040 KIAA2012Q0VF49 1180 aa12.5□□□□□ -0.41
VPS53-202ENST00000389040 G3BP1Q13283 466 aaKnown RBP eCLIP12.5□□□□□ -0.41
VPS53-202ENST00000389040 WASHC4Q2M389 1173 aa12.5□□□□□ -0.41
VPS53-202ENST00000389040 ERC1Q8IUD2 1116 aa12.5□□□□□ -0.41
VPS53-202ENST00000389040 ZNF594Q96JF6 807 aaPredicted RBP12.5□□□□□ -0.41
VPS53-202ENST00000389040 ZC3H12CQ9C0D7 883 aaKnown RBP12.5□□□□□ -0.41
VPS53-202ENST00000389040 CEP126Q9P2H0 1117 aa12.5□□□□□ -0.41
VPS53-202ENST00000389040 IARSP41252 1262 aaKnown RBP12.49□□□□□ -0.41
VPS53-202ENST00000389040 METTL24Q5JXM2 366 aa12.49□□□□□ -0.41
VPS53-202ENST00000389040 ATG9AQ7Z3C6 839 aa12.49□□□□□ -0.41
VPS53-202ENST00000389040 JDP2Q8WYK2 163 aa12.49□□□□□ -0.41
VPS53-202ENST00000389040 TBC1D32Q96NH3 1257 aa12.49□□□□□ -0.41
VPS53-202ENST00000389040 DCTPP1Q9H773 170 aa12.49□□□□□ -0.41
VPS53-202ENST00000389040 POLLQ9UGP5 575 aa12.49□□□□□ -0.41
VPS53-202ENST00000389040 AKAP2Q9Y2D5 859 aa12.49□□□□□ -0.41
VPS53-202ENST00000389040 ZNF804BA4D1E1 1349 aa12.49□□□□□ -0.41
VPS53-202ENST00000389040 C6orf229H3BNL8 230 aa12.49□□□□□ -0.41
VPS53-202ENST00000389040 UFL1O94874 794 aa12.49□□□□□ -0.41
VPS53-202ENST00000389040 KCNJ4P48050 445 aa12.49□□□□□ -0.41
VPS53-202ENST00000389040 OLFM4Q6UX06 510 aa12.49□□□□□ -0.41
VPS53-202ENST00000389040 MED23Q9ULK4 1368 aa12.48□□□□□ -0.41
VPS53-202ENST00000389040 LRRC37AA6NMS7 1700 aa12.48□□□□□ -0.41
VPS53-202ENST00000389040 RAB11FIP3O75154 756 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms