RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 LMBR1LQ6UX01 489 aa25.84■■□□□ 1.73
TRIM54-202ENST00000380075 NOL8Q76FK4 1167 aaKnown RBP25.84■■□□□ 1.73
TRIM54-202ENST00000380075 MED23Q9ULK4 1368 aa25.84■■□□□ 1.73
TRIM54-202ENST00000380075 TICAM2Q86XR7 235 aa25.84■■□□□ 1.73
TRIM54-202ENST00000380075 JARID2Q92833 1246 aaPredicted RBP25.84■■□□□ 1.73
TRIM54-202ENST00000380075 ZSWIM6Q9HCJ5 1215 aa25.84■■□□□ 1.73
TRIM54-202ENST00000380075 GPR108Q9NPR9 543 aa25.84■■□□□ 1.73
TRIM54-202ENST00000380075 DBNLQ9UJU6 430 aaKnown RBP25.84■■□□□ 1.73
TRIM54-202ENST00000380075 UBR3Q6ZT12 1888 aa25.83■■□□□ 1.73
TRIM54-202ENST00000380075 AK2P54819 239 aa25.83■■□□□ 1.73
TRIM54-202ENST00000380075 PRPF40BQ6NWY9 871 aaKnown RBP25.83■■□□□ 1.73
TRIM54-202ENST00000380075 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.83■■□□□ 1.73
TRIM54-202ENST00000380075 WDR33Q9C0J8 1336 aaKnown RBP25.82■■□□□ 1.72
TRIM54-202ENST00000380075 CASTP20810 708 aaKnown RBP25.82■■□□□ 1.72
TRIM54-202ENST00000380075 RNF20Q5VTR2 975 aa25.82■■□□□ 1.72
TRIM54-202ENST00000380075 ZSCAN31Q96LW9 406 aaPredicted RBP25.82■■□□□ 1.72
TRIM54-202ENST00000380075 RBM8AQ9Y5S9 174 aaKnown RBP25.82■■□□□ 1.72
TRIM54-202ENST00000380075 CYP46A1Q9Y6A2 500 aa25.82■■□□□ 1.72
TRIM54-202ENST00000380075 ADRA2BP18089 450 aa25.82■■□□□ 1.72
TRIM54-202ENST00000380075 FLAD1Q8NFF5 587 aa25.82■■□□□ 1.72
TRIM54-202ENST00000380075 FAM227BQ96M60 508 aa25.82■■□□□ 1.72
TRIM54-202ENST00000380075 ARXQ96QS3 562 aa25.82■■□□□ 1.72
TRIM54-202ENST00000380075 PSMA5P28066 241 aa25.81■■□□□ 1.72
TRIM54-202ENST00000380075 RFC4P35249 363 aa25.8■■□□□ 1.72
TRIM54-202ENST00000380075 JAKMIP1Q96N16 626 aaKnown RBP25.8■■□□□ 1.72
TRIM54-202ENST00000380075 SH2B1Q9NRF2 756 aaPredicted RBP25.8■■□□□ 1.72
TRIM54-202ENST00000380075 TBC1D2BQ9UPU7 963 aa25.8■■□□□ 1.72
TRIM54-202ENST00000380075 KCNJ4P48050 445 aa25.8■■□□□ 1.72
TRIM54-202ENST00000380075 CREB3L3Q68CJ9 461 aa25.8■■□□□ 1.72
TRIM54-202ENST00000380075 RUFY3Q7L099 469 aa25.8■■□□□ 1.72
TRIM54-202ENST00000380075 PDRG1Q9NUG6 133 aa25.8■■□□□ 1.72
TRIM54-202ENST00000380075 HMG20BQ9P0W2 317 aa25.8■■□□□ 1.72
TRIM54-202ENST00000380075 A0A0D9SFI3 127 aa25.79■■□□□ 1.72
TRIM54-202ENST00000380075 IL15P40933 162 aaPredicted RBP25.79■■□□□ 1.72
TRIM54-202ENST00000380075 TRIM28Q13263 835 aaKnown RBP25.79■■□□□ 1.72
TRIM54-202ENST00000380075 HAUS7Q99871 368 aa25.79■■□□□ 1.72
TRIM54-202ENST00000380075 ISCA1Q9BUE6 129 aa25.79■■□□□ 1.72
TRIM54-202ENST00000380075 SRP68Q9UHB9 627 aaKnown RBP25.78■■□□□ 1.72
TRIM54-202ENST00000380075 PRPF40AO75400 957 aaKnown RBP25.78■■□□□ 1.72
TRIM54-202ENST00000380075 CIAO1O76071 339 aa25.78■■□□□ 1.72
TRIM54-202ENST00000380075 ZNF445P59923 1031 aa25.78■■□□□ 1.72
TRIM54-202ENST00000380075 DZIP3Q86Y13 1208 aaKnown RBP25.78■■□□□ 1.72
TRIM54-202ENST00000380075 ZBTB3Q9H5J0 574 aa25.78■■□□□ 1.72
TRIM54-202ENST00000380075 RPAP1Q9BWH6 1393 aaPredicted RBP25.78■■□□□ 1.72
TRIM54-202ENST00000380075 MBD3O95983 291 aa25.77■■□□□ 1.72
TRIM54-202ENST00000380075 TCIRG1Q13488 830 aa25.76■■□□□ 1.72
TRIM54-202ENST00000380075 TSGA10IPQ3SY00 556 aa25.76■■□□□ 1.72
TRIM54-202ENST00000380075 DBNDD2Q9BQY9 259 aa25.76■■□□□ 1.72
TRIM54-202ENST00000380075 FBXO3Q9UK99 471 aa25.76■■□□□ 1.72
TRIM54-202ENST00000380075 CHMP3Q9Y3E7 222 aa25.76■■□□□ 1.72
TRIM54-202ENST00000380075 SLC27A2O14975 620 aa25.76■■□□□ 1.71
TRIM54-202ENST00000380075 NARFQ9UHQ1 456 aa25.76■■□□□ 1.71
TRIM54-202ENST00000380075 ADCK5Q3MIX3 580 aa25.75■■□□□ 1.71
TRIM54-202ENST00000380075 USPL1Q5W0Q7 1092 aa25.75■■□□□ 1.71
TRIM54-202ENST00000380075 ATG9AQ7Z3C6 839 aa25.75■■□□□ 1.71
TRIM54-202ENST00000380075 ALDH8A1Q9H2A2 487 aaPredicted RBP25.75■■□□□ 1.71
TRIM54-202ENST00000380075 ZPR1O75312 459 aa25.75■■□□□ 1.71
TRIM54-202ENST00000380075 KIF6Q6ZMV9 814 aa25.75■■□□□ 1.71
TRIM54-202ENST00000380075 GAS2L3Q86XJ1 694 aa25.75■■□□□ 1.71
TRIM54-202ENST00000380075 EYA2O00167 538 aa25.74■■□□□ 1.71
TRIM54-202ENST00000380075 PDIA4P13667 645 aaKnown RBP25.74■■□□□ 1.71
TRIM54-202ENST00000380075 ANKRD1Q15327 319 aa25.74■■□□□ 1.71
TRIM54-202ENST00000380075 FAM43AQ8N2R8 423 aa25.74■■□□□ 1.71
TRIM54-202ENST00000380075 CAMTA2O94983 1202 aa25.73■■□□□ 1.71
TRIM54-202ENST00000380075 SMC3Q9UQE7 1217 aa25.73■■□□□ 1.71
TRIM54-202ENST00000380075 QSER1Q2KHR3 1735 aa25.73■■□□□ 1.71
TRIM54-202ENST00000380075 KRT32Q14532 448 aa25.73■■□□□ 1.71
TRIM54-202ENST00000380075 TAF5LO75529 589 aa25.72■■□□□ 1.71
TRIM54-202ENST00000380075 ZBTB7AO95365 584 aa25.72■■□□□ 1.71
TRIM54-202ENST00000380075 GYS1P13807 737 aa25.72■■□□□ 1.71
TRIM54-202ENST00000380075 NCLP19338 710 aaKnown RBP25.72■■□□□ 1.71
TRIM54-202ENST00000380075 CAVIN1Q6NZI2 390 aaKnown RBP25.72■■□□□ 1.71
TRIM54-202ENST00000380075 PLA2G12BQ9BX93 195 aa25.72■■□□□ 1.71
TRIM54-202ENST00000380075 PANK2Q9BZ23 570 aa25.72■■□□□ 1.71
TRIM54-202ENST00000380075 BCL2L12Q9HB09 334 aa25.72■■□□□ 1.71
TRIM54-202ENST00000380075 MSL1Q68DK7 614 aa25.71■■□□□ 1.71
TRIM54-202ENST00000380075 KBTBD3Q8NAB2 608 aa25.71■■□□□ 1.71
TRIM54-202ENST00000380075 ZNF609O15014 1411 aa25.71■■□□□ 1.71
TRIM54-202ENST00000380075 PCCAP05165 728 aaPredicted RBP25.71■■□□□ 1.71
TRIM54-202ENST00000380075 ZSCAN23Q3MJ62 389 aa25.71■■□□□ 1.71
TRIM54-202ENST00000380075 GPT2Q8TD30 523 aa25.71■■□□□ 1.71
TRIM54-202ENST00000380075 SRCAPQ6ZRS2 3230 aa25.71■■□□□ 1.71
TRIM54-202ENST00000380075 C4AP0C0L4 1744 aa25.7■■□□□ 1.71
TRIM54-202ENST00000380075 HLFQ16534 295 aa25.7■■□□□ 1.7
TRIM54-202ENST00000380075 FOXD4L5Q5VV16 416 aaPredicted RBP25.7■■□□□ 1.7
TRIM54-202ENST00000380075 BLOC1S2Q6QNY1 142 aa25.7■■□□□ 1.7
TRIM54-202ENST00000380075 ZNF589Q86UQ0 364 aaPredicted RBP25.7■■□□□ 1.7
TRIM54-202ENST00000380075 SLC16A10Q8TF71 515 aa25.7■■□□□ 1.7
TRIM54-202ENST00000380075 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.7■■□□□ 1.7
TRIM54-202ENST00000380075 FOXD4L4Q8WXT5 416 aaPredicted RBP25.7■■□□□ 1.7
TRIM54-202ENST00000380075 DNAJC2Q99543 621 aaKnown RBP25.7■■□□□ 1.7
TRIM54-202ENST00000380075 MAP3K15Q6ZN16 1313 aa25.7■■□□□ 1.7
TRIM54-202ENST00000380075 SH3TC1Q8TE82 1336 aa25.7■■□□□ 1.7
TRIM54-202ENST00000380075 CPA1P15085 419 aa25.69■■□□□ 1.7
TRIM54-202ENST00000380075 MCMDC2Q4G0Z9 681 aa25.69■■□□□ 1.7
TRIM54-202ENST00000380075 ATP6V1DQ9Y5K8 247 aa25.69■■□□□ 1.7
TRIM54-202ENST00000380075 U3KPZ7 1027 aaPredicted RBP25.69■■□□□ 1.7
TRIM54-202ENST00000380075 ZSCAN22P10073 491 aaPredicted RBP25.69■■□□□ 1.7
TRIM54-202ENST00000380075 EDC3Q96F86 508 aaKnown RBP25.69■■□□□ 1.7
TRIM54-202ENST00000380075 CASZ1Q86V15 1759 aa25.69■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms