RNA–Protein interactions for RNA: ENST00000379018.7

PDLIM4-202, Transcript of PDZ and LIM domain 4, humanhuman

TSL 1 (best) BASIC

Gene PDLIM4, Length 1,006 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-202ENST00000379018 RGS19P49795 217 aa23.14■■□□□ 1.29
PDLIM4-202ENST00000379018 ZNF157P51786 506 aaPredicted RBP23.14■■□□□ 1.29
PDLIM4-202ENST00000379018 RALBP1Q15311 655 aa23.14■■□□□ 1.29
PDLIM4-202ENST00000379018 GGA3Q9NZ52 723 aa23.14■■□□□ 1.29
PDLIM4-202ENST00000379018 DBF4Q9UBU7 674 aaPredicted RBP23.14■■□□□ 1.29
PDLIM4-202ENST00000379018 SCN9AQ15858 1988 aa23.13■■□□□ 1.29
PDLIM4-202ENST00000379018 RPS12P25398 132 aaKnown RBP23.13■■□□□ 1.29
PDLIM4-202ENST00000379018 KIF23Q02241 960 aaPredicted RBP23.13■■□□□ 1.29
PDLIM4-202ENST00000379018 TBC1D16Q8TBP0 767 aa23.13■■□□□ 1.29
PDLIM4-202ENST00000379018 TRIM35Q9UPQ4 493 aa23.13■■□□□ 1.29
PDLIM4-202ENST00000379018 ASTN2O75129 1339 aaPredicted RBP23.12■■□□□ 1.29
PDLIM4-202ENST00000379018 FAM155AB1AL88 458 aaPredicted RBP23.12■■□□□ 1.29
PDLIM4-202ENST00000379018 UFL1O94874 794 aa23.12■■□□□ 1.29
PDLIM4-202ENST00000379018 RPS8P62241 208 aaKnown RBP23.12■■□□□ 1.29
PDLIM4-202ENST00000379018 WDR43Q15061 677 aaKnown RBP eCLIP23.12■■□□□ 1.29
PDLIM4-202ENST00000379018 SULF1Q8IWU6 871 aa23.12■■□□□ 1.29
PDLIM4-202ENST00000379018 CCDC85AQ96PX6 553 aaPredicted RBP23.12■■□□□ 1.29
PDLIM4-202ENST00000379018 ZC3H12CQ9C0D7 883 aaKnown RBP23.12■■□□□ 1.29
PDLIM4-202ENST00000379018 SEC31BQ9NQW1 1179 aa23.12■■□□□ 1.29
PDLIM4-202ENST00000379018 ANKIB1Q9P2G1 1089 aa23.12■■□□□ 1.29
PDLIM4-202ENST00000379018 TRPA1O75762 1119 aa23.11■■□□□ 1.29
PDLIM4-202ENST00000379018 DUSP27Q5VZP5 1158 aa23.11■■□□□ 1.29
PDLIM4-202ENST00000379018 RUNDC1Q96C34 613 aa23.11■■□□□ 1.29
PDLIM4-202ENST00000379018 RIC3Q7Z5B4 369 aa23.1■■□□□ 1.29
PDLIM4-202ENST00000379018 CCDC102AQ96A19 550 aa23.1■■□□□ 1.29
PDLIM4-202ENST00000379018 HYPKQ9NX55 129 aa23.1■■□□□ 1.29
PDLIM4-202ENST00000379018 AKAP11Q9UKA4 1901 aa23.1■■□□□ 1.29
PDLIM4-202ENST00000379018 JARID2Q92833 1246 aaPredicted RBP23.09■■□□□ 1.29
PDLIM4-202ENST00000379018 HOXB7P09629 217 aa23.08■■□□□ 1.29
PDLIM4-202ENST00000379018 SOX10P56693 466 aa23.08■■□□□ 1.29
PDLIM4-202ENST00000379018 GOLGA2Q08379 1002 aa23.08■■□□□ 1.29
PDLIM4-202ENST00000379018 CDCA5Q96FF9 252 aa23.08■■□□□ 1.29
PDLIM4-202ENST00000379018 MYD88Q99836 296 aa23.08■■□□□ 1.29
PDLIM4-202ENST00000379018 RNF186Q9NXI6 227 aa23.08■■□□□ 1.29
PDLIM4-202ENST00000379018 GGA1Q9UJY5 639 aa23.08■■□□□ 1.29
PDLIM4-202ENST00000379018 ANGEL2Q5VTE6 544 aaKnown RBP23.07■■□□□ 1.28
PDLIM4-202ENST00000379018 MYBBP1AQ9BQG0 1328 aaKnown RBP23.07■■□□□ 1.28
PDLIM4-202ENST00000379018 ELL2O00472 640 aaPredicted RBP23.06■■□□□ 1.28
PDLIM4-202ENST00000379018 VIL1P09327 827 aaKnown RBP23.06■■□□□ 1.28
PDLIM4-202ENST00000379018 ZBTB38Q8NAP3 1195 aaPredicted RBP23.06■■□□□ 1.28
PDLIM4-202ENST00000379018 PHAXQ9H814 394 aaKnown RBP23.06■■□□□ 1.28
PDLIM4-202ENST00000379018 MBIPQ9NS73 344 aa23.06■■□□□ 1.28
PDLIM4-202ENST00000379018 SCAF8Q9UPN6 1271 aaKnown RBP23.06■■□□□ 1.28
PDLIM4-202ENST00000379018 SLC10A3P09131 477 aa23.05■■□□□ 1.28
PDLIM4-202ENST00000379018 SCARF1Q14162 830 aa23.05■■□□□ 1.28
PDLIM4-202ENST00000379018 SAGE1Q9NXZ1 904 aa23.05■■□□□ 1.28
PDLIM4-202ENST00000379018 DDX10Q13206 875 aaKnown RBP23.03■■□□□ 1.28
PDLIM4-202ENST00000379018 TRIM28Q13263 835 aaKnown RBP23.03■■□□□ 1.28
PDLIM4-202ENST00000379018 CCDC152Q4G0S7 254 aa23.03■■□□□ 1.28
PDLIM4-202ENST00000379018 RSBN1LQ6PCB5 846 aaPredicted RBP23.03■■□□□ 1.28
PDLIM4-202ENST00000379018 CSRNP1Q96S65 589 aa23.03■■□□□ 1.28
PDLIM4-202ENST00000379018 PODXL2Q9NZ53 605 aa23.03■■□□□ 1.28
PDLIM4-202ENST00000379018 ADAMTS8Q9UP79 889 aa23.03■■□□□ 1.28
PDLIM4-202ENST00000379018 RASAL3Q86YV0 1011 aa23.02■■□□□ 1.28
PDLIM4-202ENST00000379018 PDE4DIPQ5VU43 2346 aa23.01■■□□□ 1.27
PDLIM4-202ENST00000379018 HSP90B1P14625 803 aaKnown RBP23.01■■□□□ 1.27
PDLIM4-202ENST00000379018 FBXW7Q969H0 707 aa23.01■■□□□ 1.27
PDLIM4-202ENST00000379018 PDE8AO60658 829 aa23■■□□□ 1.27
PDLIM4-202ENST00000379018 MOB2Q70IA6 237 aa23■■□□□ 1.27
PDLIM4-202ENST00000379018 ANKRD18AQ8IVF6 992 aa23■■□□□ 1.27
PDLIM4-202ENST00000379018 AGBL3Q8NEM8 1001 aa23■■□□□ 1.27
PDLIM4-202ENST00000379018 CWC25Q9NXE8 425 aaPredicted RBP23■■□□□ 1.27
PDLIM4-202ENST00000379018 PSME4Q14997 1843 aa22.99■■□□□ 1.27
PDLIM4-202ENST00000379018 SPEF2Q9C093 1822 aa22.99■■□□□ 1.27
PDLIM4-202ENST00000379018 PCCAP05165 728 aaPredicted RBP22.99■■□□□ 1.27
PDLIM4-202ENST00000379018 USP17L8P0C7I0 530 aa22.99■■□□□ 1.27
PDLIM4-202ENST00000379018 ZNF280AP59817 542 aaPredicted RBP22.99■■□□□ 1.27
PDLIM4-202ENST00000379018 TTLL12Q14166 644 aaPredicted RBP22.99■■□□□ 1.27
PDLIM4-202ENST00000379018 PRAMEF18Q5VWM3 479 aa22.99■■□□□ 1.27
PDLIM4-202ENST00000379018 MYOZ2Q9NPC6 264 aa22.99■■□□□ 1.27
PDLIM4-202ENST00000379018 TNRC18O15417 2968 aaPredicted RBP22.99■■□□□ 1.27
PDLIM4-202ENST00000379018 XDHP47989 1333 aa22.99■■□□□ 1.27
PDLIM4-202ENST00000379018 CCDC191Q8NCU4 936 aa22.98■■□□□ 1.27
PDLIM4-202ENST00000379018 PAPPA2Q9BXP8 1791 aa22.98■■□□□ 1.27
PDLIM4-202ENST00000379018 USP17L3A6NCW0 530 aa22.97■■□□□ 1.27
PDLIM4-202ENST00000379018 USP17L4A6NCW7 530 aa22.97■■□□□ 1.27
PDLIM4-202ENST00000379018 USP17L1Q7RTZ2 530 aa22.97■■□□□ 1.27
PDLIM4-202ENST00000379018 CTU1Q7Z7A3 348 aaKnown RBP22.97■■□□□ 1.27
PDLIM4-202ENST00000379018 MXD3Q9BW11 206 aa22.97■■□□□ 1.27
PDLIM4-202ENST00000379018 WTIPA6NIX2 430 aaPredicted RBP22.96■■□□□ 1.27
PDLIM4-202ENST00000379018 UBE2Q2LH0YL09 131 aa22.96■■□□□ 1.27
PDLIM4-202ENST00000379018 ATP2B4P23634 1241 aa22.96■■□□□ 1.27
PDLIM4-202ENST00000379018 MKRN3Q13064 507 aaKnown RBP22.96■■□□□ 1.27
PDLIM4-202ENST00000379018 APAF1O14727 1248 aa22.94■■□□□ 1.26
PDLIM4-202ENST00000379018 DDX58O95786 925 aaKnown RBP22.94■■□□□ 1.26
PDLIM4-202ENST00000379018 GNAI1P63096 354 aa22.94■■□□□ 1.26
PDLIM4-202ENST00000379018 NBPF9Q3BBW0 867 aa22.94■■□□□ 1.26
PDLIM4-202ENST00000379018 GMLQ99445 158 aa22.94■■□□□ 1.26
PDLIM4-202ENST00000379018 METTL22Q9BUU2 404 aaPredicted RBP22.94■■□□□ 1.26
PDLIM4-202ENST00000379018 IFT57Q9NWB7 429 aa22.94■■□□□ 1.26
PDLIM4-202ENST00000379018 HDAC9Q9UKV0 1011 aa22.94■■□□□ 1.26
PDLIM4-202ENST00000379018 MAP3K2Q9Y2U5 619 aa22.94■■□□□ 1.26
PDLIM4-202ENST00000379018 ZNF609O15014 1411 aa22.93■■□□□ 1.26
PDLIM4-202ENST00000379018 TBC1D8O95759 1140 aa22.93■■□□□ 1.26
PDLIM4-202ENST00000379018 ZNF853P0CG23 659 aa22.93■■□□□ 1.26
PDLIM4-202ENST00000379018 CTSWP56202 376 aa22.93■■□□□ 1.26
PDLIM4-202ENST00000379018 FKBP1BP68106 108 aa22.93■■□□□ 1.26
PDLIM4-202ENST00000379018 C8orf58Q8NAV2 365 aa22.93■■□□□ 1.26
PDLIM4-202ENST00000379018 CDC5LQ99459 802 aaKnown RBP22.93■■□□□ 1.26
PDLIM4-202ENST00000379018 PITPNM2Q9BZ72 1349 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms