RNA–Protein interactions for RNA: ENST00000378122.4

PCDHA9-201, Transcript of protocadherin alpha 9, humanhuman

BASIC

Gene PCDHA9, Length 6,900 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-201ENST00000378122 MRPS9P82933 396 aaKnown RBP13.71□□□□□ -0.21
PCDHA9-201ENST00000378122 CCDC102BQ68D86 513 aa13.71□□□□□ -0.21
PCDHA9-201ENST00000378122 NCOA7Q8NI08 942 aa13.71□□□□□ -0.21
PCDHA9-201ENST00000378122 SNX21Q969T3 373 aa13.71□□□□□ -0.21
PCDHA9-201ENST00000378122 MEIS3Q99687 375 aa13.71□□□□□ -0.21
PCDHA9-201ENST00000378122 IL16Q14005 1332 aa13.71□□□□□ -0.22
PCDHA9-201ENST00000378122 ATP5J2-PTCD1G3V325 749 aa13.71□□□□□ -0.22
PCDHA9-201ENST00000378122 EIF6P56537 245 aaKnown RBP13.71□□□□□ -0.22
PCDHA9-201ENST00000378122 TCEANC2Q96MN5 208 aa13.71□□□□□ -0.22
PCDHA9-201ENST00000378122 RNF41Q9H4P4 317 aaPredicted RBP13.71□□□□□ -0.22
PCDHA9-201ENST00000378122 DNAI1Q9UI46 699 aa13.71□□□□□ -0.22
PCDHA9-201ENST00000378122 F13A1P00488 732 aa13.71□□□□□ -0.22
PCDHA9-201ENST00000378122 CCDC175P0C221 793 aa13.71□□□□□ -0.22
PCDHA9-201ENST00000378122 ZNF710Q8N1W2 664 aa13.71□□□□□ -0.22
PCDHA9-201ENST00000378122 LRRC59Q96AG4 307 aaKnown RBP13.71□□□□□ -0.22
PCDHA9-201ENST00000378122 AFMP43652 599 aa13.7□□□□□ -0.22
PCDHA9-201ENST00000378122 MNAT1P51948 309 aa13.7□□□□□ -0.22
PCDHA9-201ENST00000378122 RALGAPBQ86X10 1494 aa13.7□□□□□ -0.22
PCDHA9-201ENST00000378122 HLA-DOAP06340 250 aa13.7□□□□□ -0.22
PCDHA9-201ENST00000378122 MRPL50Q8N5N7 158 aaKnown RBP13.7□□□□□ -0.22
PCDHA9-201ENST00000378122 CALML4Q96GE6 196 aa13.7□□□□□ -0.22
PCDHA9-201ENST00000378122 Q6ZUG5 572 aa13.7□□□□□ -0.22
PCDHA9-201ENST00000378122 WASLO00401 505 aaPredicted RBP13.7□□□□□ -0.22
PCDHA9-201ENST00000378122 NOP2P46087 812 aaKnown RBP13.7□□□□□ -0.22
PCDHA9-201ENST00000378122 SP4Q02446 784 aa13.7□□□□□ -0.22
PCDHA9-201ENST00000378122 RAB3GAP1Q15042 981 aa13.7□□□□□ -0.22
PCDHA9-201ENST00000378122 SPECC1Q5M775 1068 aa13.7□□□□□ -0.22
PCDHA9-201ENST00000378122 GIGYF2Q6Y7W6 1299 aaKnown RBP13.7□□□□□ -0.22
PCDHA9-201ENST00000378122 FAM114A1Q8IWE2 563 aa13.7□□□□□ -0.22
PCDHA9-201ENST00000378122 HMGXB3Q12766 1538 aa13.7□□□□□ -0.22
PCDHA9-201ENST00000378122 RHPN1Q8TCX5 695 aa13.69□□□□□ -0.22
PCDHA9-201ENST00000378122 RAB34Q9BZG1 259 aa13.69□□□□□ -0.22
PCDHA9-201ENST00000378122 AKNAD1Q5T1N1 836 aa13.69□□□□□ -0.22
PCDHA9-201ENST00000378122 RRAGBQ5VZM2 374 aa13.69□□□□□ -0.22
PCDHA9-201ENST00000378122 KANK3Q6NY19 840 aa13.69□□□□□ -0.22
PCDHA9-201ENST00000378122 BRF1Q92994 677 aa13.69□□□□□ -0.22
PCDHA9-201ENST00000378122 PI4KAP2A4QPH2 592 aa13.69□□□□□ -0.22
PCDHA9-201ENST00000378122 PDE1AP54750 535 aa13.69□□□□□ -0.22
PCDHA9-201ENST00000378122 PI4KAP1Q8N8J0 262 aa13.69□□□□□ -0.22
PCDHA9-201ENST00000378122 ABT1Q9ULW3 272 aaKnown RBP13.69□□□□□ -0.22
PCDHA9-201ENST00000378122 TCIRG1Q13488 830 aa13.69□□□□□ -0.22
PCDHA9-201ENST00000378122 PROCA1Q8NCQ7 364 aaPredicted RBP13.69□□□□□ -0.22
PCDHA9-201ENST00000378122 FAM212AQ96EL1 285 aa13.69□□□□□ -0.22
PCDHA9-201ENST00000378122 DNAI2Q9GZS0 605 aa13.69□□□□□ -0.22
PCDHA9-201ENST00000378122 RBM8AQ9Y5S9 174 aaKnown RBP13.69□□□□□ -0.22
PCDHA9-201ENST00000378122 KLF18A0A0U1RQI7 1052 aa13.69□□□□□ -0.22
PCDHA9-201ENST00000378122 RXRBP28702 533 aa13.69□□□□□ -0.22
PCDHA9-201ENST00000378122 MFSD6Q6ZSS7 791 aa13.68□□□□□ -0.22
PCDHA9-201ENST00000378122 DACT1Q9NYF0 836 aa13.68□□□□□ -0.22
PCDHA9-201ENST00000378122 NIP7Q9Y221 180 aaKnown RBP eCLIP13.68□□□□□ -0.22
PCDHA9-201ENST00000378122 KIAA0586Q9BVV6 1533 aa13.68□□□□□ -0.22
PCDHA9-201ENST00000378122 ANKRD36BQ8N2N9 1353 aa13.68□□□□□ -0.22
PCDHA9-201ENST00000378122 IVLP07476 585 aa13.68□□□□□ -0.22
PCDHA9-201ENST00000378122 TTF1Q15361 905 aaPredicted RBP13.68□□□□□ -0.22
PCDHA9-201ENST00000378122 ZCRB1Q8TBF4 217 aaKnown RBP13.68□□□□□ -0.22
PCDHA9-201ENST00000378122 SEC24BO95487 1268 aa13.68□□□□□ -0.22
PCDHA9-201ENST00000378122 ANXA1P04083 346 aa13.68□□□□□ -0.22
PCDHA9-201ENST00000378122 AMPD3Q01432 767 aa13.68□□□□□ -0.22
PCDHA9-201ENST00000378122 FAM200AQ8TCP9 573 aa13.68□□□□□ -0.22
PCDHA9-201ENST00000378122 IGSF3O75054 1194 aa13.68□□□□□ -0.22
PCDHA9-201ENST00000378122 ARL1P40616 181 aaPredicted RBP13.68□□□□□ -0.22
PCDHA9-201ENST00000378122 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.68□□□□□ -0.22
PCDHA9-201ENST00000378122 N4BP3O15049 544 aa13.68□□□□□ -0.22
PCDHA9-201ENST00000378122 TRAPPC3LQ5T215 181 aa13.68□□□□□ -0.22
PCDHA9-201ENST00000378122 BBXQ8WY36 941 aaPredicted RBP13.68□□□□□ -0.22
PCDHA9-201ENST00000378122 TRIM47Q96LD4 638 aa13.68□□□□□ -0.22
PCDHA9-201ENST00000378122 ARFGAP3Q9NP61 516 aa13.68□□□□□ -0.22
PCDHA9-201ENST00000378122 MCM6Q14566 821 aa13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 TCERG1LQ5VWI1 586 aa13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 CCDC24Q8N4L8 307 aa13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 CDC5LQ99459 802 aaKnown RBP13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 SYT1P21579 422 aa13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 PTGS1P23219 599 aa13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 MARCKSP29966 332 aaPredicted RBP13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 ZGPATQ8N5A5 531 aaKnown RBP13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 EXOC1Q9NV70 894 aa13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 ATF5Q9Y2D1 282 aaPredicted RBP13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 TCP11L1Q9NUJ3 509 aa13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 RTL1A6NKG5 1358 aa13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 THOC2Q8NI27 1593 aaKnown RBP13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 SLU7O95391 586 aaKnown RBP13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 CAVIN2O95810 425 aa13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 CEP112Q8N8E3 955 aa13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 DDX17Q92841 729 aaKnown RBP13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 CWC25Q9NXE8 425 aaPredicted RBP13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 CCNL1Q9UK58 526 aaPredicted RBP13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 DPY19L2Q6NUT2 758 aa13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 ALG1Q9BT22 464 aa13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 KAT14Q9H8E8 782 aa13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 RRAGDQ9NQL2 400 aaPredicted RBP13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 TTC21BQ7Z4L5 1316 aa13.67□□□□□ -0.22
PCDHA9-201ENST00000378122 ABCA10Q8WWZ4 1543 aa13.66□□□□□ -0.22
PCDHA9-201ENST00000378122 CTAGE15A4D2H0 777 aa13.66□□□□□ -0.22
PCDHA9-201ENST00000378122 CTAGE8P0CG41 777 aa13.66□□□□□ -0.22
PCDHA9-201ENST00000378122 IDEP14735 1019 aa13.66□□□□□ -0.22
PCDHA9-201ENST00000378122 CNGA1P29973 690 aa13.66□□□□□ -0.22
PCDHA9-201ENST00000378122 CTAGE6Q86UF2 777 aa13.66□□□□□ -0.22
PCDHA9-201ENST00000378122 CTAGE4Q8IX94 777 aa13.66□□□□□ -0.22
PCDHA9-201ENST00000378122 TAOK3Q9H2K8 898 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms