RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 SOGA3Q5TF21 947 aa16.98■□□□□ 0.31
TCOF1-202ENST00000377797 ORC3Q9UBD5 711 aaPredicted RBP16.98■□□□□ 0.31
TCOF1-202ENST00000377797 NOL7Q9UMY1 257 aaKnown RBP16.98■□□□□ 0.31
TCOF1-202ENST00000377797 CPA1P15085 419 aa16.98■□□□□ 0.31
TCOF1-202ENST00000377797 TXLNAP40222 546 aa16.98■□□□□ 0.31
TCOF1-202ENST00000377797 CCDC144CPQ8IYA2 1237 aa16.98■□□□□ 0.31
TCOF1-202ENST00000377797 ZNF444Q8N0Y2 327 aaPredicted RBP16.98■□□□□ 0.31
TCOF1-202ENST00000377797 IBTKQ9P2D0 1353 aaPredicted RBP16.98■□□□□ 0.31
TCOF1-202ENST00000377797 TMEM131LA2VDJ0 1609 aa16.98■□□□□ 0.31
TCOF1-202ENST00000377797 POLR1AO95602 1720 aaPredicted RBP16.98■□□□□ 0.31
TCOF1-202ENST00000377797 SPTY2D1Q68D10 685 aaPredicted RBP16.98■□□□□ 0.31
TCOF1-202ENST00000377797 NEURL4Q96JN8 1562 aa16.97■□□□□ 0.31
TCOF1-202ENST00000377797 KLF18A0A0U1RQI7 1052 aa16.97■□□□□ 0.31
TCOF1-202ENST00000377797 TRAPPC3LQ5T215 181 aa16.97■□□□□ 0.31
TCOF1-202ENST00000377797 Q6ZUG5 572 aa16.97■□□□□ 0.31
TCOF1-202ENST00000377797 XAGE2Q96GT9 111 aa16.97■□□□□ 0.31
TCOF1-202ENST00000377797 ZNF622Q969S3 477 aaKnown RBP eCLIP16.97■□□□□ 0.311e-6■■□□□ 12.3
TCOF1-202ENST00000377797 SLC4A4Q9Y6R1 1079 aa16.97■□□□□ 0.31
TCOF1-202ENST00000377797 MYO3AQ8NEV4 1616 aa16.97■□□□□ 0.31
TCOF1-202ENST00000377797 BAG3O95817 575 aa16.97■□□□□ 0.31
TCOF1-202ENST00000377797 TFCP2L1Q9NZI6 479 aa16.97■□□□□ 0.31
TCOF1-202ENST00000377797 OVOS2A0A0J9YW53 1432 aa16.96■□□□□ 0.31
TCOF1-202ENST00000377797 OVOS2Q6IE36 1432 aa16.96■□□□□ 0.31
TCOF1-202ENST00000377797 NAA16Q6N069 864 aaPredicted RBP16.96■□□□□ 0.31
TCOF1-202ENST00000377797 NSFL1CQ9UNZ2 370 aaKnown RBP16.96■□□□□ 0.31
TCOF1-202ENST00000377797 CCDC129Q6ZRS4 1044 aa16.96■□□□□ 0.31
TCOF1-202ENST00000377797 SLF2Q8IX21 1173 aa16.96■□□□□ 0.31
TCOF1-202ENST00000377797 C1orf167Q5SNV9 1468 aa16.96■□□□□ 0.31
TCOF1-202ENST00000377797 IARSP41252 1262 aaKnown RBP16.96■□□□□ 0.3
TCOF1-202ENST00000377797 CCDC173Q0VFZ6 552 aa16.96■□□□□ 0.3
TCOF1-202ENST00000377797 CAMK4Q16566 473 aa16.95■□□□□ 0.3
TCOF1-202ENST00000377797 SLC4A8Q2Y0W8 1093 aa16.95■□□□□ 0.3
TCOF1-202ENST00000377797 EDC3Q96F86 508 aaKnown RBP16.95■□□□□ 0.3
TCOF1-202ENST00000377797 FAM13BQ9NYF5 915 aa16.95■□□□□ 0.3
TCOF1-202ENST00000377797 PCMTD1Q96MG8 357 aaPredicted RBP16.95■□□□□ 0.3
TCOF1-202ENST00000377797 TMOD2Q9NZR1 351 aa16.95■□□□□ 0.3
TCOF1-202ENST00000377797 ZSCAN22P10073 491 aaPredicted RBP16.95■□□□□ 0.3
TCOF1-202ENST00000377797 METAP2P50579 478 aaKnown RBP eCLIP16.95■□□□□ 0.33e-8■■□□□ 13.7
TCOF1-202ENST00000377797 CHST3Q7LGC8 479 aa16.95■□□□□ 0.3
TCOF1-202ENST00000377797 KBTBD3Q8NAB2 608 aa16.95■□□□□ 0.3
TCOF1-202ENST00000377797 CCDC39Q9UFE4 941 aa16.95■□□□□ 0.3
TCOF1-202ENST00000377797 MAP3K11Q16584 847 aa16.95■□□□□ 0.3
TCOF1-202ENST00000377797 CRNKL1Q9BZJ0 848 aaKnown RBP16.95■□□□□ 0.3
TCOF1-202ENST00000377797 MAGEB6Q8N7X4 407 aa16.94■□□□□ 0.3
TCOF1-202ENST00000377797 TSPY2A6NKD2 308 aa16.94■□□□□ 0.3
TCOF1-202ENST00000377797 CATIPQ7Z7H3 387 aa16.94■□□□□ 0.3
TCOF1-202ENST00000377797 CRACR2BQ8N4Y2 399 aaPredicted RBP16.94■□□□□ 0.3
TCOF1-202ENST00000377797 PPLO60437 1756 aa16.94■□□□□ 0.3
TCOF1-202ENST00000377797 PUM3Q15397 648 aaKnown RBP16.94■□□□□ 0.3
TCOF1-202ENST00000377797 MPNDQ8N594 471 aa16.94■□□□□ 0.3
TCOF1-202ENST00000377797 MIGA1Q8NAN2 632 aa16.94■□□□□ 0.3
TCOF1-202ENST00000377797 LOC102724428A0A0B4J2F2 783 aa16.94■□□□□ 0.3
TCOF1-202ENST00000377797 SIK1P57059 783 aa16.94■□□□□ 0.3
TCOF1-202ENST00000377797 FAM43AQ8N2R8 423 aa16.94■□□□□ 0.3
TCOF1-202ENST00000377797 ZBTB1Q9Y2K1 713 aa16.94■□□□□ 0.3
TCOF1-202ENST00000377797 MPHOSPH10O00566 681 aaKnown RBP16.93■□□□□ 0.3
TCOF1-202ENST00000377797 SSRP1Q08945 709 aaKnown RBP16.93■□□□□ 0.3
TCOF1-202ENST00000377797 RUFY3Q7L099 469 aa16.93■□□□□ 0.3
TCOF1-202ENST00000377797 TAF5LO75529 589 aa16.93■□□□□ 0.3
TCOF1-202ENST00000377797 ATP5JP18859 108 aa16.93■□□□□ 0.3
TCOF1-202ENST00000377797 PDE4BQ07343 736 aa16.93■□□□□ 0.3
TCOF1-202ENST00000377797 CCDC24Q8N4L8 307 aa16.93■□□□□ 0.3
TCOF1-202ENST00000377797 HELLSQ9NRZ9 838 aa16.93■□□□□ 0.3
TCOF1-202ENST00000377797 TNS3Q68CZ2 1445 aa16.93■□□□□ 0.3
TCOF1-202ENST00000377797 ZNF592Q92610 1267 aa16.93■□□□□ 0.3
TCOF1-202ENST00000377797 PRC1O43663 620 aa16.92■□□□□ 0.3
TCOF1-202ENST00000377797 DHX32Q7L7V1 743 aaKnown RBP16.92■□□□□ 0.3
TCOF1-202ENST00000377797 COPRSQ9NQ92 184 aa16.92■□□□□ 0.3
TCOF1-202ENST00000377797 KLHL40Q2TBA0 621 aa16.92■□□□□ 0.3
TCOF1-202ENST00000377797 ZBTB38Q8NAP3 1195 aaPredicted RBP16.92■□□□□ 0.3
TCOF1-202ENST00000377797 SNX14Q9Y5W7 946 aa16.92■□□□□ 0.3
TCOF1-202ENST00000377797 CCDC183Q5T5S1 534 aa16.92■□□□□ 0.3
TCOF1-202ENST00000377797 CNBD1Q8NA66 436 aa16.92■□□□□ 0.3
TCOF1-202ENST00000377797 HEG1Q9ULI3 1381 aa16.92■□□□□ 0.3
TCOF1-202ENST00000377797 SMC2O95347 1197 aa16.92■□□□□ 0.3
TCOF1-202ENST00000377797 RAB3GAP1Q15042 981 aa16.92■□□□□ 0.3
TCOF1-202ENST00000377797 PIGBQ92521 554 aa16.92■□□□□ 0.3
TCOF1-202ENST00000377797 INTS4Q96HW7 963 aaKnown RBP16.92■□□□□ 0.3
TCOF1-202ENST00000377797 CDK5RAP3Q96JB5 506 aa16.92■□□□□ 0.3
TCOF1-202ENST00000377797 KRT23Q9C075 422 aa16.92■□□□□ 0.3
TCOF1-202ENST00000377797 ZBTB43O43298 467 aa16.91■□□□□ 0.3
TCOF1-202ENST00000377797 PCCAP05165 728 aaPredicted RBP16.91■□□□□ 0.3
TCOF1-202ENST00000377797 WTAPQ15007 396 aa16.91■□□□□ 0.3
TCOF1-202ENST00000377797 MAP3K15Q6ZN16 1313 aa16.91■□□□□ 0.3
TCOF1-202ENST00000377797 SPC24Q8NBT2 197 aa16.91■□□□□ 0.3
TCOF1-202ENST00000377797 CCDC43Q96MW1 224 aaKnown RBP16.91■□□□□ 0.3
TCOF1-202ENST00000377797 GIGYF2Q6Y7W6 1299 aaKnown RBP16.91■□□□□ 0.3
TCOF1-202ENST00000377797 ESR2Q92731 530 aa16.91■□□□□ 0.3
TCOF1-202ENST00000377797 ANKRD2Q9GZV1 360 aa16.91■□□□□ 0.3
TCOF1-202ENST00000377797 CNNM2Q9H8M5 875 aa16.91■□□□□ 0.3
TCOF1-202ENST00000377797 NCAPD2Q15021 1401 aa16.9■□□□□ 0.3
TCOF1-202ENST00000377797 SLC27A2O14975 620 aa16.9■□□□□ 0.3
TCOF1-202ENST00000377797 LPIN2Q92539 896 aa16.9■□□□□ 0.3
TCOF1-202ENST00000377797 SLC26A6Q9BXS9 759 aa16.9■□□□□ 0.3
TCOF1-202ENST00000377797 JAG2Q9Y219 1238 aa16.9■□□□□ 0.3
TCOF1-202ENST00000377797 CTSWP56202 376 aa16.9■□□□□ 0.3
TCOF1-202ENST00000377797 ARID3AQ99856 593 aa16.9■□□□□ 0.3
TCOF1-202ENST00000377797 STAP2Q9UGK3 403 aa16.9■□□□□ 0.3
TCOF1-202ENST00000377797 RICTORQ6R327 1708 aa16.9■□□□□ 0.3
TCOF1-202ENST00000377797 MAGEB6P1A0A0J9YX57 407 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms