RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 GRM8O00222 908 aa15.4■□□□□ 0.06
VRK3-202ENST00000377011 CSF1RP07333 972 aa15.4■□□□□ 0.06
VRK3-202ENST00000377011 RGS3P49796 1198 aa15.4■□□□□ 0.06
VRK3-202ENST00000377011 C1QTNF8P60827 252 aa15.4■□□□□ 0.06
VRK3-202ENST00000377011 CC2D2BQ6DHV5 1058 aa15.4■□□□□ 0.06
VRK3-202ENST00000377011 PANK1Q8TE04 598 aa15.4■□□□□ 0.06
VRK3-202ENST00000377011 SRCIN1Q9C0H9 1055 aa15.4■□□□□ 0.06
VRK3-202ENST00000377011 NSFL1CQ9UNZ2 370 aaKnown RBP15.4■□□□□ 0.06
VRK3-202ENST00000377011 WDR90Q96KV7 1748 aa15.39■□□□□ 0.05
VRK3-202ENST00000377011 FZD9O00144 591 aa15.39■□□□□ 0.05
VRK3-202ENST00000377011 POTEIP0CG38 1075 aa15.39■□□□□ 0.05
VRK3-202ENST00000377011 POTEJP0CG39 1038 aa15.39■□□□□ 0.05
VRK3-202ENST00000377011 LARGE2Q8N3Y3 721 aa15.39■□□□□ 0.05
VRK3-202ENST00000377011 PPIP5K2O43314 1243 aa15.38■□□□□ 0.05
VRK3-202ENST00000377011 KCNQ5Q9NR82 932 aa15.38■□□□□ 0.05
VRK3-202ENST00000377011 PTPRCP08575 1304 aa15.38■□□□□ 0.05
VRK3-202ENST00000377011 ZC3H4Q9UPT8 1303 aaKnown RBP15.38■□□□□ 0.05
VRK3-202ENST00000377011 YDJCA8MPS7 323 aa15.37■□□□□ 0.05
VRK3-202ENST00000377011 SNAP23O00161 211 aa15.37■□□□□ 0.05
VRK3-202ENST00000377011 RIMBP2O15034 1052 aa15.37■□□□□ 0.05
VRK3-202ENST00000377011 ITGA6P23229 1130 aa15.37■□□□□ 0.05
VRK3-202ENST00000377011 TBC1D16Q8TBP0 767 aa15.37■□□□□ 0.05
VRK3-202ENST00000377011 ZNF594Q96JF6 807 aaPredicted RBP15.37■□□□□ 0.05
VRK3-202ENST00000377011 USP44Q9H0E7 712 aa15.37■□□□□ 0.05
VRK3-202ENST00000377011 RWDD1Q9H446 243 aaPredicted RBP15.37■□□□□ 0.05
VRK3-202ENST00000377011 ALDH1L1O75891 902 aa15.37■□□□□ 0.05
VRK3-202ENST00000377011 ZKSCAN2Q63HK3 967 aa15.37■□□□□ 0.05
VRK3-202ENST00000377011 LMBR1LQ6UX01 489 aa15.37■□□□□ 0.05
VRK3-202ENST00000377011 FRAT1Q92837 279 aaPredicted RBP15.37■□□□□ 0.05
VRK3-202ENST00000377011 SCN9AQ15858 1988 aa15.36■□□□□ 0.05
VRK3-202ENST00000377011 PCNTO95613 3336 aa15.36■□□□□ 0.05
VRK3-202ENST00000377011 RTL9Q8NET4 1388 aa15.36■□□□□ 0.05
VRK3-202ENST00000377011 MVPQ14764 893 aaKnown RBP15.36■□□□□ 0.05
VRK3-202ENST00000377011 ANKRD18AQ8IVF6 992 aa15.36■□□□□ 0.05
VRK3-202ENST00000377011 ANKRD44Q8N8A2 993 aa15.36■□□□□ 0.05
VRK3-202ENST00000377011 C9orf78Q9NZ63 289 aaPredicted RBP15.36■□□□□ 0.05
VRK3-202ENST00000377011 UTYO14607 1347 aa15.36■□□□□ 0.05
VRK3-202ENST00000377011 A0A1B0GUL6 1792 aa15.35■□□□□ 0.05
VRK3-202ENST00000377011 KLRK1P26718 216 aa15.35■□□□□ 0.05
VRK3-202ENST00000377011 BRPF1P55201 1214 aaPredicted RBP15.35■□□□□ 0.05
VRK3-202ENST00000377011 KIAA2012Q0VF49 1180 aa15.35■□□□□ 0.05
VRK3-202ENST00000377011 DOK7Q18PE1 504 aa15.35■□□□□ 0.05
VRK3-202ENST00000377011 DBNDD1Q9H9R9 158 aa15.35■□□□□ 0.05
VRK3-202ENST00000377011 MINPP1Q9UNW1 487 aa15.35■□□□□ 0.05
VRK3-202ENST00000377011 SHTN1A0MZ66 631 aa15.34■□□□□ 0.05
VRK3-202ENST00000377011 C6orf229H3BNL8 230 aa15.34■□□□□ 0.05
VRK3-202ENST00000377011 TXNRD3Q86VQ6 643 aa15.34■□□□□ 0.05
VRK3-202ENST00000377011 BICC1Q9H694 974 aaKnown RBP15.34■□□□□ 0.05
VRK3-202ENST00000377011 GJA3Q9Y6H8 435 aa15.34■□□□□ 0.05
VRK3-202ENST00000377011 RAD17O75943 681 aa15.34■□□□□ 0.05
VRK3-202ENST00000377011 CXCL9Q07325 125 aa15.34■□□□□ 0.05
VRK3-202ENST00000377011 PODXL2Q9NZ53 605 aa15.34■□□□□ 0.05
VRK3-202ENST00000377011 CHMP3Q9Y3E7 222 aa15.34■□□□□ 0.05
VRK3-202ENST00000377011 UFL1O94874 794 aa15.33■□□□□ 0.04
VRK3-202ENST00000377011 DPY19L2Q6NUT2 758 aa15.33■□□□□ 0.04
VRK3-202ENST00000377011 TMC4Q7Z404 712 aa15.33■□□□□ 0.04
VRK3-202ENST00000377011 HELBQ8NG08 1087 aaPredicted RBP15.33■□□□□ 0.04
VRK3-202ENST00000377011 JDP2Q8WYK2 163 aa15.33■□□□□ 0.04
VRK3-202ENST00000377011 PUS3Q9BZE2 481 aaKnown RBP15.33■□□□□ 0.04
VRK3-202ENST00000377011 BSDC1Q9NW68 430 aaPredicted RBP15.33■□□□□ 0.04
VRK3-202ENST00000377011 ANKIB1Q9P2G1 1089 aa15.33■□□□□ 0.04
VRK3-202ENST00000377011 RLBP1P12271 317 aa15.32■□□□□ 0.04
VRK3-202ENST00000377011 TRIM27P14373 513 aa15.32■□□□□ 0.04
VRK3-202ENST00000377011 HSP90B1P14625 803 aaKnown RBP15.32■□□□□ 0.04
VRK3-202ENST00000377011 VEGFAP15692 232 aaPredicted RBP15.32■□□□□ 0.04
VRK3-202ENST00000377011 WASHC4Q2M389 1173 aa15.32■□□□□ 0.04
VRK3-202ENST00000377011 NIM1KQ8IY84 436 aa15.32■□□□□ 0.04
VRK3-202ENST00000377011 DZIP1LQ8IYY4 767 aaKnown RBP15.32■□□□□ 0.04
VRK3-202ENST00000377011 KLHDC4Q8TBB5 520 aa15.32■□□□□ 0.04
VRK3-202ENST00000377011 CDC5LQ99459 802 aaKnown RBP15.32■□□□□ 0.04
VRK3-202ENST00000377011 TAF5LO75529 589 aa15.31■□□□□ 0.04
VRK3-202ENST00000377011 TOMM70O94826 608 aa15.31■□□□□ 0.04
VRK3-202ENST00000377011 SCNN1DP51172 638 aa15.31■□□□□ 0.04
VRK3-202ENST00000377011 GRIPAP1Q4V328 841 aa15.31■□□□□ 0.04
VRK3-202ENST00000377011 L3MBTL3Q96JM7 780 aaPredicted RBP15.31■□□□□ 0.04
VRK3-202ENST00000377011 TMX4Q9H1E5 349 aaPredicted RBP15.31■□□□□ 0.04
VRK3-202ENST00000377011 ZNRF3Q9ULT6 936 aa15.31■□□□□ 0.04
VRK3-202ENST00000377011 PCDHB15Q9Y5E8 787 aa15.31■□□□□ 0.04
VRK3-202ENST00000377011 EPS15P42566 896 aa15.31■□□□□ 0.04
VRK3-202ENST00000377011 HTRA3P83110 453 aa15.31■□□□□ 0.04
VRK3-202ENST00000377011 BECN1Q14457 450 aa15.31■□□□□ 0.04
VRK3-202ENST00000377011 SUPT20HQ8NEM7 779 aa15.31■□□□□ 0.04
VRK3-202ENST00000377011 MEIS3Q99687 375 aa15.31■□□□□ 0.04
VRK3-202ENST00000377011 DDX19BQ9UMR2 479 aa15.31■□□□□ 0.04
VRK3-202ENST00000377011 ZBTB12Q9Y330 459 aaPredicted RBP15.31■□□□□ 0.04
VRK3-202ENST00000377011 KIF16BQ96L93 1317 aa15.31■□□□□ 0.04
VRK3-202ENST00000377011 ANKRD18BA2A2Z9 1011 aa15.3■□□□□ 0.04
VRK3-202ENST00000377011 CHRNDQ07001 517 aa15.3■□□□□ 0.04
VRK3-202ENST00000377011 HDAC1Q13547 482 aaPredicted RBP15.3■□□□□ 0.04
VRK3-202ENST00000377011 NFKBIBQ15653 356 aa15.3■□□□□ 0.04
VRK3-202ENST00000377011 RABL6Q3YEC7 729 aaPredicted RBP15.3■□□□□ 0.04
VRK3-202ENST00000377011 FTSJ3Q8IY81 847 aaKnown RBP15.3■□□□□ 0.04
VRK3-202ENST00000377011 GPC2Q8N158 579 aa15.3■□□□□ 0.04
VRK3-202ENST00000377011 TAF1DQ9H5J8 278 aaPredicted RBP15.3■□□□□ 0.04
VRK3-202ENST00000377011 UPF2Q9HAU5 1272 aaKnown RBP15.3■□□□□ 0.04
VRK3-202ENST00000377011 GGA1Q9UJY5 639 aa15.3■□□□□ 0.04
VRK3-202ENST00000377011 XDHP47989 1333 aa15.3■□□□□ 0.04
VRK3-202ENST00000377011 ZNF646O15015 1829 aaPredicted RBP15.3■□□□□ 0.04
VRK3-202ENST00000377011 SCN4AP35499 1836 aa15.3■□□□□ 0.04
VRK3-202ENST00000377011 ECE2O60344 883 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms