RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 ARHGEF10O15013 1369 aa7.56□□□□□ -1.2
SMC1A-202ENST00000375340 PTH1RQ03431 593 aa7.56□□□□□ -1.2
SMC1A-202ENST00000375340 ANKRD13DQ6ZTN6 518 aa7.56□□□□□ -1.2
SMC1A-202ENST00000375340 DNAI1Q9UI46 699 aa7.56□□□□□ -1.2
SMC1A-202ENST00000375340 NSFL1CQ9UNZ2 370 aaKnown RBP7.56□□□□□ -1.2
SMC1A-202ENST00000375340 ZMYM3Q14202 1370 aa7.56□□□□□ -1.2
SMC1A-202ENST00000375340 SSBP05455 408 aaKnown RBP eCLIP7.56□□□□□ -1.2
SMC1A-202ENST00000375340 CCDC12Q8WUD4 166 aaPredicted RBP7.56□□□□□ -1.2
SMC1A-202ENST00000375340 RNF216Q9NWF9 866 aaPredicted RBP7.56□□□□□ -1.2
SMC1A-202ENST00000375340 PPRC1Q5VV67 1664 aaKnown RBP7.56□□□□□ -1.2
SMC1A-202ENST00000375340 EFCAB6Q5THR3 1501 aa7.56□□□□□ -1.2
SMC1A-202ENST00000375340 CHL1O00533 1208 aa7.56□□□□□ -1.2
SMC1A-202ENST00000375340 ENOX2Q16206 610 aaKnown RBP7.56□□□□□ -1.2
SMC1A-202ENST00000375340 SEPT11Q9NVA2 429 aaKnown RBP7.56□□□□□ -1.2
SMC1A-202ENST00000375340 NBPF7P0C2Y1 421 aaPredicted RBP7.56□□□□□ -1.2
SMC1A-202ENST00000375340 PDIA4P13667 645 aaKnown RBP7.56□□□□□ -1.2
SMC1A-202ENST00000375340 IGHMBP2P38935 993 aaKnown RBP7.56□□□□□ -1.2
SMC1A-202ENST00000375340 KIF4BQ2VIQ3 1234 aa7.56□□□□□ -1.2
SMC1A-202ENST00000375340 AKAP4Q5JQC9 854 aa7.56□□□□□ -1.2
SMC1A-202ENST00000375340 SYT10Q6XYQ8 523 aa7.56□□□□□ -1.2
SMC1A-202ENST00000375340 GTF3C6Q969F1 213 aa7.56□□□□□ -1.2
SMC1A-202ENST00000375340 TSPYL1Q9H0U9 437 aa7.56□□□□□ -1.2
SMC1A-202ENST00000375340 TRMT112Q9UI30 125 aaKnown RBP7.56□□□□□ -1.2
SMC1A-202ENST00000375340 KIF20BQ96Q89 1820 aa7.56□□□□□ -1.2
SMC1A-202ENST00000375340 A0A1B0GVL5 298 aa7.56□□□□□ -1.2
SMC1A-202ENST00000375340 FAM135BQ49AJ0 1406 aa7.56□□□□□ -1.2
SMC1A-202ENST00000375340 KRT28Q7Z3Y7 464 aa7.56□□□□□ -1.2
SMC1A-202ENST00000375340 ALG1Q9BT22 464 aa7.56□□□□□ -1.2
SMC1A-202ENST00000375340 NUTM2BA6NNL0 878 aaPredicted RBP7.55□□□□□ -1.2
SMC1A-202ENST00000375340 NUTM2EB1AL46 878 aaPredicted RBP7.55□□□□□ -1.2
SMC1A-202ENST00000375340 LMOD1P29536 600 aaPredicted RBP7.55□□□□□ -1.2
SMC1A-202ENST00000375340 GNG11P61952 73 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 NUTM2AQ8IVF1 878 aaPredicted RBP7.55□□□□□ -1.2
SMC1A-202ENST00000375340 LRRC7Q96NW7 1537 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 IBSPP21815 317 aaPredicted RBP7.55□□□□□ -1.2
SMC1A-202ENST00000375340 KARSQ15046 597 aaKnown RBP7.55□□□□□ -1.2
SMC1A-202ENST00000375340 PUS7Q96PZ0 661 aaKnown RBP7.55□□□□□ -1.2
SMC1A-202ENST00000375340 RAD50Q92878 1312 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 ANKRD18BA2A2Z9 1011 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 JAK2O60674 1132 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 ME3Q16798 604 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 SIRT2Q8IXJ6 389 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 SLC5A1P13866 664 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 ZNF75DP51815 510 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 MEX3CQ5U5Q3 659 aaKnown RBP7.55□□□□□ -1.2
SMC1A-202ENST00000375340 SBNO2Q9Y2G9 1366 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 RNMTO43148 476 aaKnown RBP7.55□□□□□ -1.2
SMC1A-202ENST00000375340 KRT222Q8N1A0 295 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 SUCLG2Q96I99 432 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 PRC1O43663 620 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 USP5P45974 858 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 LMAN1P49257 510 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 TAF3Q5VWG9 929 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 UNC5CLQ8IV45 518 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 SBNO1A3KN83 1393 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 NFATC2IPQ8NCF5 419 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 MYRIPQ8NFW9 859 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 CLSTN2Q9H4D0 955 aa7.55□□□□□ -1.2
SMC1A-202ENST00000375340 HSPA4P34932 840 aa7.54□□□□□ -1.2
SMC1A-202ENST00000375340 JAKMIP3Q5VZ66 844 aa7.54□□□□□ -1.2
SMC1A-202ENST00000375340 SGSM2O43147 1006 aa7.54□□□□□ -1.2
SMC1A-202ENST00000375340 KCNQ3O43525 872 aa7.54□□□□□ -1.2
SMC1A-202ENST00000375340 SNRPA1P09661 255 aaKnown RBP7.54□□□□□ -1.2
SMC1A-202ENST00000375340 LMBR1LQ6UX01 489 aa7.54□□□□□ -1.2
SMC1A-202ENST00000375340 OTUD7BQ6GQQ9 843 aa7.54□□□□□ -1.2
SMC1A-202ENST00000375340 IQSEC3Q9UPP2 1182 aaPredicted RBP7.54□□□□□ -1.2
SMC1A-202ENST00000375340 ALDH1L1O75891 902 aa7.54□□□□□ -1.2
SMC1A-202ENST00000375340 BRD1O95696 1058 aa7.54□□□□□ -1.2
SMC1A-202ENST00000375340 IARSP41252 1262 aaKnown RBP7.54□□□□□ -1.2
SMC1A-202ENST00000375340 CABLES1Q8TDN4 633 aa7.54□□□□□ -1.2
SMC1A-202ENST00000375340 CCDC43Q96MW1 224 aaKnown RBP7.54□□□□□ -1.2
SMC1A-202ENST00000375340 KIF24Q5T7B8 1368 aa7.54□□□□□ -1.2
SMC1A-202ENST00000375340 STARD3NLO95772 234 aa7.54□□□□□ -1.2
SMC1A-202ENST00000375340 AOX1Q06278 1338 aa7.54□□□□□ -1.2
SMC1A-202ENST00000375340 RNF113AO15541 343 aaKnown RBP7.54□□□□□ -1.2
SMC1A-202ENST00000375340 CT47A1Q5JQC4 288 aaPredicted RBP7.54□□□□□ -1.2
SMC1A-202ENST00000375340 SPECC1Q5M775 1068 aa7.54□□□□□ -1.2
SMC1A-202ENST00000375340 ZNF594Q96JF6 807 aaPredicted RBP7.54□□□□□ -1.2
SMC1A-202ENST00000375340 RGS12O14924 1447 aa7.54□□□□□ -1.2
SMC1A-202ENST00000375340 MFSD6Q6ZSS7 791 aa7.54□□□□□ -1.2
SMC1A-202ENST00000375340 EDC3Q96F86 508 aaKnown RBP7.53□□□□□ -1.2
SMC1A-202ENST00000375340 PPP1R9BQ96SB3 815 aa7.53□□□□□ -1.2
SMC1A-202ENST00000375340 YEATS2Q9ULM3 1422 aa7.53□□□□□ -1.2
SMC1A-202ENST00000375340 CTDP1Q9Y5B0 961 aaPredicted RBP7.53□□□□□ -1.2
SMC1A-202ENST00000375340 SPTLC2O15270 562 aa7.53□□□□□ -1.2
SMC1A-202ENST00000375340 MAP3K12Q12852 859 aa7.53□□□□□ -1.2
SMC1A-202ENST00000375340 ELF2Q15723 593 aa7.53□□□□□ -1.2
SMC1A-202ENST00000375340 MPHOSPH10O00566 681 aaKnown RBP7.53□□□□□ -1.2
SMC1A-202ENST00000375340 NLRP5P59047 1200 aa7.53□□□□□ -1.2
SMC1A-202ENST00000375340 SOGA3Q5TF21 947 aa7.53□□□□□ -1.2
SMC1A-202ENST00000375340 LEO1Q8WVC0 666 aaPredicted RBP7.53□□□□□ -1.2
SMC1A-202ENST00000375340 ZKSCAN3Q9BRR0 538 aa7.53□□□□□ -1.2
SMC1A-202ENST00000375340 ABCC3O15438 1527 aa7.53□□□□□ -1.2
SMC1A-202ENST00000375340 IBTKQ9P2D0 1353 aaPredicted RBP7.53□□□□□ -1.2
SMC1A-202ENST00000375340 GOLGA6L10A6NI86 522 aa7.53□□□□□ -1.2
SMC1A-202ENST00000375340 MATR3P43243 847 aaKnown RBP eCLIP7.53□□□□□ -1.2
SMC1A-202ENST00000375340 ODF2Q5BJF6 829 aa7.53□□□□□ -1.2
SMC1A-202ENST00000375340 IFNL2Q8IZJ0 200 aa7.53□□□□□ -1.2
SMC1A-202ENST00000375340 KCNG4Q8TDN1 519 aa7.53□□□□□ -1.2
SMC1A-202ENST00000375340 KIAA0754O94854 1291 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 161.4 ms