RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 DBF4Q9UBU7 674 aaPredicted RBP13.45□□□□□ -0.26
CLRN3-201ENST00000368671 HOXB7P09629 217 aa13.44□□□□□ -0.26
CLRN3-201ENST00000368671 DUSP27Q5VZP5 1158 aa13.44□□□□□ -0.26
CLRN3-201ENST00000368671 CFAP44Q96MT7 982 aa13.44□□□□□ -0.26
CLRN3-201ENST00000368671 ISCA1Q9BUE6 129 aa13.44□□□□□ -0.26
CLRN3-201ENST00000368671 PRDM10Q9NQV6 1147 aa13.44□□□□□ -0.26
CLRN3-201ENST00000368671 MBIPQ9NS73 344 aa13.44□□□□□ -0.26
CLRN3-201ENST00000368671 WBP1LQ9NX94 342 aa13.44□□□□□ -0.26
CLRN3-201ENST00000368671 COL4A1P02462 1669 aa13.44□□□□□ -0.26
CLRN3-201ENST00000368671 THSD7BQ9C0I4 1608 aa13.43□□□□□ -0.26
CLRN3-201ENST00000368671 LBX1P52954 281 aa13.43□□□□□ -0.26
CLRN3-201ENST00000368671 TNIP1Q15025 636 aa13.43□□□□□ -0.26
CLRN3-201ENST00000368671 CYP4F22Q6NT55 531 aa13.43□□□□□ -0.26
CLRN3-201ENST00000368671 CELF1Q92879 486 aaKnown RBP13.43□□□□□ -0.26
CLRN3-201ENST00000368671 HYPKQ9NX55 129 aa13.43□□□□□ -0.26
CLRN3-201ENST00000368671 YDJCA8MPS7 323 aa13.42□□□□□ -0.26
CLRN3-201ENST00000368671 CST9Q5W186 159 aa13.42□□□□□ -0.26
CLRN3-201ENST00000368671 TMC4Q7Z404 712 aa13.42□□□□□ -0.26
CLRN3-201ENST00000368671 CAPNS2Q96L46 248 aa13.42□□□□□ -0.26
CLRN3-201ENST00000368671 GLIS2Q9BZE0 524 aaPredicted RBP13.42□□□□□ -0.26
CLRN3-201ENST00000368671 BMP2KQ9NSY1 1161 aaPredicted RBP13.42□□□□□ -0.26
CLRN3-201ENST00000368671 PCDHB8Q9UN66 801 aa13.42□□□□□ -0.26
CLRN3-201ENST00000368671 NSFL1CQ9UNZ2 370 aaKnown RBP13.42□□□□□ -0.26
CLRN3-201ENST00000368671 CDHR2Q9BYE9 1310 aa13.41□□□□□ -0.26
CLRN3-201ENST00000368671 ELL2O00472 640 aaPredicted RBP13.41□□□□□ -0.26
CLRN3-201ENST00000368671 IRS4O14654 1257 aaPredicted RBP13.41□□□□□ -0.26
CLRN3-201ENST00000368671 RIMBP2O15034 1052 aa13.41□□□□□ -0.26
CLRN3-201ENST00000368671 ATMINO43313 823 aaPredicted RBP13.41□□□□□ -0.26
CLRN3-201ENST00000368671 HSPA8P11142 646 aaKnown RBP13.41□□□□□ -0.26
CLRN3-201ENST00000368671 ECE1P42892 770 aa13.41□□□□□ -0.26
CLRN3-201ENST00000368671 MAP2K1Q02750 393 aaPredicted RBP13.41□□□□□ -0.26
CLRN3-201ENST00000368671 SF3B3Q15393 1217 aaKnown RBP13.41□□□□□ -0.26
CLRN3-201ENST00000368671 RIC3Q7Z5B4 369 aa13.41□□□□□ -0.26
CLRN3-201ENST00000368671 PRKRIP1Q9H875 184 aaPredicted RBP13.41□□□□□ -0.26
CLRN3-201ENST00000368671 ZNF408Q9H9D4 720 aa13.41□□□□□ -0.26
CLRN3-201ENST00000368671 DBNDD1Q9H9R9 158 aa13.41□□□□□ -0.26
CLRN3-201ENST00000368671 TLL2Q9Y6L7 1015 aa13.41□□□□□ -0.26
CLRN3-201ENST00000368671 SHTN1A0MZ66 631 aa13.4□□□□□ -0.26
CLRN3-201ENST00000368671 C6orf229H3BNL8 230 aa13.4□□□□□ -0.26
CLRN3-201ENST00000368671 APAF1O14727 1248 aa13.4□□□□□ -0.26
CLRN3-201ENST00000368671 CELF2O95319 508 aaKnown RBP13.4□□□□□ -0.26
CLRN3-201ENST00000368671 GPSM2P81274 684 aa13.4□□□□□ -0.26
CLRN3-201ENST00000368671 GOLGA2Q08379 1002 aa13.4□□□□□ -0.26
CLRN3-201ENST00000368671 WASHC4Q2M389 1173 aa13.4□□□□□ -0.26
CLRN3-201ENST00000368671 TRPM4Q8TD43 1214 aa13.4□□□□□ -0.26
CLRN3-201ENST00000368671 PHAXQ9H814 394 aaKnown RBP13.4□□□□□ -0.26
CLRN3-201ENST00000368671 CNOT7Q9UIV1 285 aaKnown RBP13.4□□□□□ -0.26
CLRN3-201ENST00000368671 ZNF853P0CG23 659 aa13.39□□□□□ -0.27
CLRN3-201ENST00000368671 HIRAP54198 1017 aaPredicted RBP13.39□□□□□ -0.27
CLRN3-201ENST00000368671 GNAI1P63096 354 aa13.39□□□□□ -0.27
CLRN3-201ENST00000368671 MICALL2Q8IY33 904 aa13.39□□□□□ -0.27
CLRN3-201ENST00000368671 RNF25Q96BH1 459 aaPredicted RBP13.39□□□□□ -0.27
CLRN3-201ENST00000368671 GPR101Q96P66 508 aaPredicted RBP13.39□□□□□ -0.27
CLRN3-201ENST00000368671 MYD88Q99836 296 aa13.39□□□□□ -0.27
CLRN3-201ENST00000368671 IFT57Q9NWB7 429 aa13.39□□□□□ -0.27
CLRN3-201ENST00000368671 H7C1D1 291 aa13.38□□□□□ -0.27
CLRN3-201ENST00000368671 PSMD14O00487 310 aa13.38□□□□□ -0.27
CLRN3-201ENST00000368671 AOC2O75106 756 aa13.38□□□□□ -0.27
CLRN3-201ENST00000368671 CALD1Q05682 793 aaKnown RBP13.38□□□□□ -0.27
CLRN3-201ENST00000368671 DOK7Q18PE1 504 aa13.38□□□□□ -0.27
CLRN3-201ENST00000368671 EYA3Q99504 573 aa13.38□□□□□ -0.27
CLRN3-201ENST00000368671 BEGAINQ9BUH8 593 aa13.38□□□□□ -0.27
CLRN3-201ENST00000368671 POLLQ9UGP5 575 aa13.38□□□□□ -0.27
CLRN3-201ENST00000368671 PGAP2Q9UHJ9 254 aa13.38□□□□□ -0.27
CLRN3-201ENST00000368671 TTLL13PA6NNM8 815 aa13.37□□□□□ -0.27
CLRN3-201ENST00000368671 ECE2O60344 883 aa13.37□□□□□ -0.27
CLRN3-201ENST00000368671 RPS8P62241 208 aaKnown RBP13.37□□□□□ -0.27
CLRN3-201ENST00000368671 TRIM28Q13263 835 aaKnown RBP13.37□□□□□ -0.27
CLRN3-201ENST00000368671 CDC37L1Q7L3B6 337 aa13.37□□□□□ -0.27
CLRN3-201ENST00000368671 SAMD7Q7Z3H4 446 aa13.37□□□□□ -0.27
CLRN3-201ENST00000368671 ZBTB38Q8NAP3 1195 aaPredicted RBP13.37□□□□□ -0.27
CLRN3-201ENST00000368671 ZC3H15Q8WU90 426 aaKnown RBP13.37□□□□□ -0.27
CLRN3-201ENST00000368671 JARID2Q92833 1246 aaPredicted RBP13.37□□□□□ -0.27
CLRN3-201ENST00000368671 SEC31BQ9NQW1 1179 aa13.37□□□□□ -0.27
CLRN3-201ENST00000368671 TBC1D10BQ4KMP7 808 aaPredicted RBP13.36□□□□□ -0.27
CLRN3-201ENST00000368671 RBM26Q5T8P6 1007 aaKnown RBP13.36□□□□□ -0.27
CLRN3-201ENST00000368671 SAPCD2Q86UD0 394 aa13.36□□□□□ -0.27
CLRN3-201ENST00000368671 USP48Q86UV5 1035 aa13.36□□□□□ -0.27
CLRN3-201ENST00000368671 C8orf58Q8NAV2 365 aa13.36□□□□□ -0.27
CLRN3-201ENST00000368671 TBC1D16Q8TBP0 767 aa13.36□□□□□ -0.27
CLRN3-201ENST00000368671 CCDC85AQ96PX6 553 aaPredicted RBP13.36□□□□□ -0.27
CLRN3-201ENST00000368671 KCNQ5Q9NR82 932 aa13.36□□□□□ -0.27
CLRN3-201ENST00000368671 TSKSQ9UJT2 592 aa13.36□□□□□ -0.27
CLRN3-201ENST00000368671 PCNTO95613 3336 aa13.36□□□□□ -0.27
CLRN3-201ENST00000368671 SPEF2Q9C093 1822 aa13.36□□□□□ -0.27
CLRN3-201ENST00000368671 G3V3G9 751 aa13.35□□□□□ -0.27
CLRN3-201ENST00000368671 ECM2O94769 699 aaPredicted RBP13.35□□□□□ -0.27
CLRN3-201ENST00000368671 DLK2Q6UY11 383 aa13.35□□□□□ -0.27
CLRN3-201ENST00000368671 DPF2Q92785 391 aa13.35□□□□□ -0.27
CLRN3-201ENST00000368671 ZC3H12CQ9C0D7 883 aaKnown RBP13.35□□□□□ -0.27
CLRN3-201ENST00000368671 CWC25Q9NXE8 425 aaPredicted RBP13.35□□□□□ -0.27
CLRN3-201ENST00000368671 RTL9Q8NET4 1388 aa13.34□□□□□ -0.27
CLRN3-201ENST00000368671 PDE8AO60658 829 aa13.34□□□□□ -0.27
CLRN3-201ENST00000368671 UFL1O94874 794 aa13.34□□□□□ -0.27
CLRN3-201ENST00000368671 DDX58O95786 925 aaKnown RBP13.34□□□□□ -0.27
CLRN3-201ENST00000368671 EGFRP00533 1210 aa13.34□□□□□ -0.27
CLRN3-201ENST00000368671 PCCAP05165 728 aaPredicted RBP13.34□□□□□ -0.27
CLRN3-201ENST00000368671 HSP90B1P14625 803 aaKnown RBP13.34□□□□□ -0.27
CLRN3-201ENST00000368671 MAP2K2P36507 400 aa13.34□□□□□ -0.27
CLRN3-201ENST00000368671 ATN1P54259 1190 aaPredicted RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms