RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 MINPP1Q9UNW1 487 aa18.92■□□□□ 0.62
SMPDL3A-201ENST00000368440 WTIPA6NIX2 430 aaPredicted RBP18.92■□□□□ 0.62
SMPDL3A-201ENST00000368440 ITPRIPQ8IWB1 547 aa18.92■□□□□ 0.62
SMPDL3A-201ENST00000368440 MPHOSPH8Q99549 860 aa18.92■□□□□ 0.62
SMPDL3A-201ENST00000368440 PPIP5K2O43314 1243 aa18.91■□□□□ 0.62
SMPDL3A-201ENST00000368440 GNAI3P08754 354 aa18.91■□□□□ 0.62
SMPDL3A-201ENST00000368440 SUPT20HQ8NEM7 779 aa18.91■□□□□ 0.62
SMPDL3A-201ENST00000368440 TBC1D16Q8TBP0 767 aa18.91■□□□□ 0.62
SMPDL3A-201ENST00000368440 PODXL2Q9NZ53 605 aa18.91■□□□□ 0.62
SMPDL3A-201ENST00000368440 ANKIB1Q9P2G1 1089 aa18.91■□□□□ 0.62
SMPDL3A-201ENST00000368440 C6orf229H3BNL8 230 aa18.9■□□□□ 0.62
SMPDL3A-201ENST00000368440 LARGE2Q8N3Y3 721 aa18.9■□□□□ 0.62
SMPDL3A-201ENST00000368440 KLHDC4Q8TBB5 520 aa18.9■□□□□ 0.62
SMPDL3A-201ENST00000368440 XDHP47989 1333 aa18.9■□□□□ 0.62
SMPDL3A-201ENST00000368440 ZC3H4Q9UPT8 1303 aaKnown RBP18.9■□□□□ 0.62
SMPDL3A-201ENST00000368440 UFL1O94874 794 aa18.9■□□□□ 0.62
SMPDL3A-201ENST00000368440 TAF7LQ5H9L4 462 aa18.9■□□□□ 0.62
SMPDL3A-201ENST00000368440 PUS3Q9BZE2 481 aaKnown RBP18.9■□□□□ 0.62
SMPDL3A-201ENST00000368440 KIAA2012Q0VF49 1180 aa18.89■□□□□ 0.61
SMPDL3A-201ENST00000368440 C20orf194Q5TEA3 1177 aa18.89■□□□□ 0.61
SMPDL3A-201ENST00000368440 ZNF541Q9H0D2 1346 aa18.88■□□□□ 0.61
SMPDL3A-201ENST00000368440 RIMBP2O15034 1052 aa18.88■□□□□ 0.61
SMPDL3A-201ENST00000368440 RFX5P48382 616 aaPredicted RBP18.88■□□□□ 0.61
SMPDL3A-201ENST00000368440 CHRNDQ07001 517 aa18.88■□□□□ 0.61
SMPDL3A-201ENST00000368440 GGA1Q9UJY5 639 aa18.88■□□□□ 0.61
SMPDL3A-201ENST00000368440 LDHAL6AQ6ZMR3 332 aa18.88■□□□□ 0.61
SMPDL3A-201ENST00000368440 HELBQ8NG08 1087 aaPredicted RBP18.88■□□□□ 0.61
SMPDL3A-201ENST00000368440 FZD9O00144 591 aa18.87■□□□□ 0.61
SMPDL3A-201ENST00000368440 ZBTB7BO15156 539 aaPredicted RBP18.87■□□□□ 0.61
SMPDL3A-201ENST00000368440 WASHC4Q2M389 1173 aa18.87■□□□□ 0.61
SMPDL3A-201ENST00000368440 JDP2Q8WYK2 163 aa18.87■□□□□ 0.61
SMPDL3A-201ENST00000368440 CNNM1Q9NRU3 951 aa18.87■□□□□ 0.61
SMPDL3A-201ENST00000368440 SNAP23O00161 211 aa18.86■□□□□ 0.61
SMPDL3A-201ENST00000368440 TAF5LO75529 589 aa18.86■□□□□ 0.61
SMPDL3A-201ENST00000368440 LRRC24Q50LG9 513 aa18.86■□□□□ 0.61
SMPDL3A-201ENST00000368440 NIM1KQ8IY84 436 aa18.86■□□□□ 0.61
SMPDL3A-201ENST00000368440 VPS33BQ9H267 617 aa18.86■□□□□ 0.61
SMPDL3A-201ENST00000368440 C1orf115Q9H7X2 142 aa18.86■□□□□ 0.61
SMPDL3A-201ENST00000368440 COG6Q9Y2V7 657 aa18.86■□□□□ 0.61
SMPDL3A-201ENST00000368440 GLTPD2A6NH11 291 aa18.86■□□□□ 0.61
SMPDL3A-201ENST00000368440 GNAI2P04899 355 aa18.86■□□□□ 0.61
SMPDL3A-201ENST00000368440 MS4A1P11836 297 aa18.86■□□□□ 0.61
SMPDL3A-201ENST00000368440 ATP2B4P23634 1241 aa18.86■□□□□ 0.61
SMPDL3A-201ENST00000368440 HDAC5Q9UQL6 1122 aa18.86■□□□□ 0.61
SMPDL3A-201ENST00000368440 WDR90Q96KV7 1748 aa18.85■□□□□ 0.61
SMPDL3A-201ENST00000368440 PTPN12Q05209 780 aaKnown RBP18.85■□□□□ 0.61
SMPDL3A-201ENST00000368440 MVPQ14764 893 aaKnown RBP18.85■□□□□ 0.61
SMPDL3A-201ENST00000368440 EYA3Q99504 573 aa18.85■□□□□ 0.61
SMPDL3A-201ENST00000368440 ANKRD2Q9GZV1 360 aa18.85■□□□□ 0.61
SMPDL3A-201ENST00000368440 GPBP1L1Q9HC44 474 aaPredicted RBP18.85■□□□□ 0.61
SMPDL3A-201ENST00000368440 NMRK2Q9NPI5 230 aa18.85■□□□□ 0.61
SMPDL3A-201ENST00000368440 SCN9AQ15858 1988 aa18.85■□□□□ 0.61
SMPDL3A-201ENST00000368440 DDNO94850 711 aaPredicted RBP18.84■□□□□ 0.61
SMPDL3A-201ENST00000368440 KLRK1P26718 216 aa18.84■□□□□ 0.61
SMPDL3A-201ENST00000368440 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.84■□□□□ 0.61
SMPDL3A-201ENST00000368440 DBNDD1Q9H9R9 158 aa18.84■□□□□ 0.61
SMPDL3A-201ENST00000368440 RIPOR2Q9Y4F9 1068 aa18.84■□□□□ 0.61
SMPDL3A-201ENST00000368440 YDJCA8MPS7 323 aa18.84■□□□□ 0.61
SMPDL3A-201ENST00000368440 DOK7Q18PE1 504 aa18.84■□□□□ 0.61
SMPDL3A-201ENST00000368440 PA2G4Q9UQ80 394 aaKnown RBP18.84■□□□□ 0.61
SMPDL3A-201ENST00000368440 ZNF804BA4D1E1 1349 aa18.83■□□□□ 0.61
SMPDL3A-201ENST00000368440 KDM2BQ8NHM5 1336 aa18.83■□□□□ 0.61
SMPDL3A-201ENST00000368440 MTX1Q13505 466 aa18.83■□□□□ 0.6
SMPDL3A-201ENST00000368440 TXNRD3Q86VQ6 643 aa18.83■□□□□ 0.6
SMPDL3A-201ENST00000368440 LEMD3Q9Y2U8 911 aa18.83■□□□□ 0.6
SMPDL3A-201ENST00000368440 GTF3C3Q9Y5Q9 886 aa18.83■□□□□ 0.6
SMPDL3A-201ENST00000368440 MED23Q9ULK4 1368 aa18.83■□□□□ 0.6
SMPDL3A-201ENST00000368440 PNMA6EA0A0J9YXQ4 647 aa18.82■□□□□ 0.6
SMPDL3A-201ENST00000368440 SRGAP3O43295 1099 aa18.82■□□□□ 0.6
SMPDL3A-201ENST00000368440 DPY19L2Q6NUT2 758 aa18.82■□□□□ 0.6
SMPDL3A-201ENST00000368440 ZC3H12CQ9C0D7 883 aaKnown RBP18.82■□□□□ 0.6
SMPDL3A-201ENST00000368440 SIL1Q9H173 461 aa18.82■□□□□ 0.6
SMPDL3A-201ENST00000368440 ZNRF3Q9ULT6 936 aa18.82■□□□□ 0.6
SMPDL3A-201ENST00000368440 ZNF646O15015 1829 aaPredicted RBP18.82■□□□□ 0.6
SMPDL3A-201ENST00000368440 PSME4Q14997 1843 aa18.82■□□□□ 0.6
SMPDL3A-201ENST00000368440 ECE2O60344 883 aa18.82■□□□□ 0.6
SMPDL3A-201ENST00000368440 RRP1P56182 461 aaKnown RBP18.82■□□□□ 0.6
SMPDL3A-201ENST00000368440 PDE3AQ14432 1141 aa18.82■□□□□ 0.6
SMPDL3A-201ENST00000368440 IRS2Q9Y4H2 1338 aa18.81■□□□□ 0.6
SMPDL3A-201ENST00000368440 EIF6P56537 245 aaKnown RBP18.81■□□□□ 0.6
SMPDL3A-201ENST00000368440 RRAGCQ9HB90 399 aa18.81■□□□□ 0.6
SMPDL3A-201ENST00000368440 KCNQ5Q9NR82 932 aa18.81■□□□□ 0.6
SMPDL3A-201ENST00000368440 POTECB2RU33 542 aa18.8■□□□□ 0.6
SMPDL3A-201ENST00000368440 EYA2O00167 538 aa18.8■□□□□ 0.6
SMPDL3A-201ENST00000368440 KCNJ4P48050 445 aa18.8■□□□□ 0.6
SMPDL3A-201ENST00000368440 CXCL9Q07325 125 aa18.8■□□□□ 0.6
SMPDL3A-201ENST00000368440 ATG9AQ7Z3C6 839 aa18.8■□□□□ 0.6
SMPDL3A-201ENST00000368440 VGLL2Q8N8G2 317 aa18.8■□□□□ 0.6
SMPDL3A-201ENST00000368440 MROH5Q6ZUA9 1318 aa18.8■□□□□ 0.6
SMPDL3A-201ENST00000368440 RAD17O75943 681 aa18.8■□□□□ 0.6
SMPDL3A-201ENST00000368440 METTL24Q5JXM2 366 aa18.8■□□□□ 0.6
SMPDL3A-201ENST00000368440 DDX19BQ9UMR2 479 aa18.8■□□□□ 0.6
SMPDL3A-201ENST00000368440 GJA3Q9Y6H8 435 aa18.8■□□□□ 0.6
SMPDL3A-201ENST00000368440 KIF3CO14782 793 aa18.79■□□□□ 0.6
SMPDL3A-201ENST00000368440 COPRSQ9NQ92 184 aa18.79■□□□□ 0.6
SMPDL3A-201ENST00000368440 SCN4AP35499 1836 aa18.78■□□□□ 0.6
SMPDL3A-201ENST00000368440 GPC2Q8N158 579 aa18.78■□□□□ 0.6
SMPDL3A-201ENST00000368440 ZBTB40Q9NUA8 1239 aa18.77■□□□□ 0.6
SMPDL3A-201ENST00000368440 ATP8B2P98198 1209 aa18.77■□□□□ 0.6
SMPDL3A-201ENST00000368440 POLA2Q14181 598 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms