RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 NOP58Q9Y2X3 529 aaKnown RBP27.52■■■□□ 2
SDC3-202ENST00000339394 CIAO1O76071 339 aa27.51■■□□□ 1.99
SDC3-202ENST00000339394 TMX4Q9H1E5 349 aaPredicted RBP27.51■■□□□ 1.99
SDC3-202ENST00000339394 G3BP1Q13283 466 aaKnown RBP eCLIP27.5■■□□□ 1.99
SDC3-202ENST00000339394 EXOC6BQ9Y2D4 811 aa27.5■■□□□ 1.99
SDC3-202ENST00000339394 SLX4Q8IY92 1834 aa27.5■■□□□ 1.99
SDC3-202ENST00000339394 IL15P40933 162 aaPredicted RBP27.49■■□□□ 1.99
SDC3-202ENST00000339394 CHRNDQ07001 517 aa27.49■■□□□ 1.99
SDC3-202ENST00000339394 ERICH6BQ5W0A0 696 aa27.49■■□□□ 1.99
SDC3-202ENST00000339394 CC2D2BQ6DHV5 1058 aa27.48■■□□□ 1.99
SDC3-202ENST00000339394 RWDD1Q9H446 243 aaPredicted RBP27.48■■□□□ 1.99
SDC3-202ENST00000339394 IGHDP01880 384 aa27.48■■□□□ 1.99
SDC3-202ENST00000339394 DCTPP1Q9H773 170 aa27.48■■□□□ 1.99
SDC3-202ENST00000339394 NSFL1CQ9UNZ2 370 aaKnown RBP27.48■■□□□ 1.99
SDC3-202ENST00000339394 MROH5Q6ZUA9 1318 aa27.47■■□□□ 1.99
SDC3-202ENST00000339394 BRCA1P38398 1863 aaKnown RBP27.47■■□□□ 1.99
SDC3-202ENST00000339394 SOGA3Q5TF21 947 aa27.47■■□□□ 1.99
SDC3-202ENST00000339394 PELP1Q8IZL8 1130 aaKnown RBP27.47■■□□□ 1.99
SDC3-202ENST00000339394 HELBQ8NG08 1087 aaPredicted RBP27.47■■□□□ 1.99
SDC3-202ENST00000339394 ANKIB1Q9P2G1 1089 aa27.47■■□□□ 1.99
SDC3-202ENST00000339394 YBX3P16989 372 aaKnown RBP eCLIP27.46■■□□□ 1.994e-7■■■■□ 24.3
SDC3-202ENST00000339394 GPSM2P81274 684 aa27.46■■□□□ 1.99
SDC3-202ENST00000339394 OS9Q13438 667 aaPredicted RBP27.46■■□□□ 1.99
SDC3-202ENST00000339394 METTL24Q5JXM2 366 aa27.46■■□□□ 1.99
SDC3-202ENST00000339394 TAF5LO75529 589 aa27.45■■□□□ 1.99
SDC3-202ENST00000339394 CCDC93Q567U6 631 aa27.45■■□□□ 1.99
SDC3-202ENST00000339394 ANKRD2Q9GZV1 360 aa27.45■■□□□ 1.99
SDC3-202ENST00000339394 SASH1O94885 1247 aa27.44■■□□□ 1.98
SDC3-202ENST00000339394 HSP90AB4PQ58FF6 505 aa27.44■■□□□ 1.98
SDC3-202ENST00000339394 MPNDQ8N594 471 aa27.44■■□□□ 1.98
SDC3-202ENST00000339394 VGLL2Q8N8G2 317 aa27.44■■□□□ 1.98
SDC3-202ENST00000339394 PODXL2Q9NZ53 605 aa27.44■■□□□ 1.98
SDC3-202ENST00000339394 XDHP47989 1333 aa27.44■■□□□ 1.98
SDC3-202ENST00000339394 RTKN2Q8IZC4 609 aa27.43■■□□□ 1.98
SDC3-202ENST00000339394 CEP126Q9P2H0 1117 aa27.43■■□□□ 1.98
SDC3-202ENST00000339394 PDE8BO95263 885 aa27.43■■□□□ 1.98
SDC3-202ENST00000339394 GPR162Q16538 588 aa27.43■■□□□ 1.98
SDC3-202ENST00000339394 GRIPAP1Q4V328 841 aa27.43■■□□□ 1.98
SDC3-202ENST00000339394 DPP8Q6V1X1 898 aaPredicted RBP27.43■■□□□ 1.98
SDC3-202ENST00000339394 SNED1Q8TER0 1413 aa27.42■■□□□ 1.98
SDC3-202ENST00000339394 WTIPA6NIX2 430 aaPredicted RBP27.42■■□□□ 1.98
SDC3-202ENST00000339394 APBB1O00213 710 aa27.42■■□□□ 1.98
SDC3-202ENST00000339394 TFCP2Q12800 502 aa27.42■■□□□ 1.98
SDC3-202ENST00000339394 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP27.42■■□□□ 1.98
SDC3-202ENST00000339394 SNAP23O00161 211 aa27.41■■□□□ 1.98
SDC3-202ENST00000339394 RAB11FIP3O75154 756 aa27.41■■□□□ 1.98
SDC3-202ENST00000339394 ERC1Q8IUD2 1116 aa27.41■■□□□ 1.98
SDC3-202ENST00000339394 CACNA1SQ13698 1873 aa27.4■■□□□ 1.98
SDC3-202ENST00000339394 POLLQ9UGP5 575 aa27.4■■□□□ 1.98
SDC3-202ENST00000339394 GGA1Q9UJY5 639 aa27.4■■□□□ 1.98
SDC3-202ENST00000339394 TBC1D16Q8TBP0 767 aa27.39■■□□□ 1.98
SDC3-202ENST00000339394 RHPN1Q8TCX5 695 aa27.39■■□□□ 1.98
SDC3-202ENST00000339394 GCC1Q96CN9 775 aa27.39■■□□□ 1.98
SDC3-202ENST00000339394 LEMD3Q9Y2U8 911 aa27.39■■□□□ 1.98
SDC3-202ENST00000339394 LRRC37AA6NMS7 1700 aa27.39■■□□□ 1.97
SDC3-202ENST00000339394 RTFDC1Q9BY42 306 aaPredicted RBP27.39■■□□□ 1.97
SDC3-202ENST00000339394 SPEF2Q9C093 1822 aa27.38■■□□□ 1.97
SDC3-202ENST00000339394 UFL1O94874 794 aa27.38■■□□□ 1.97
SDC3-202ENST00000339394 ATP2B4P23634 1241 aa27.38■■□□□ 1.97
SDC3-202ENST00000339394 KIF1BPQ96EK5 621 aa27.38■■□□□ 1.97
SDC3-202ENST00000339394 PSMD1Q99460 953 aa27.38■■□□□ 1.97
SDC3-202ENST00000339394 ZNF804BA4D1E1 1349 aa27.37■■□□□ 1.97
SDC3-202ENST00000339394 C6orf229H3BNL8 230 aa27.37■■□□□ 1.97
SDC3-202ENST00000339394 NFKBIEO00221 500 aa27.37■■□□□ 1.97
SDC3-202ENST00000339394 KCNJ4P48050 445 aa27.37■■□□□ 1.97
SDC3-202ENST00000339394 ARHGAP27Q6ZUM4 889 aa27.37■■□□□ 1.97
SDC3-202ENST00000339394 SMC5Q8IY18 1101 aa27.37■■□□□ 1.97
SDC3-202ENST00000339394 CCDC136Q96JN2 1154 aa27.37■■□□□ 1.97
SDC3-202ENST00000339394 PPP4R2Q9NY27 417 aa27.37■■□□□ 1.97
SDC3-202ENST00000339394 FKBP4Q02790 459 aaKnown RBP eCLIP27.36■■□□□ 1.97
SDC3-202ENST00000339394 UBE4AQ14139 1066 aa27.36■■□□□ 1.97
SDC3-202ENST00000339394 PUM3Q15397 648 aaKnown RBP27.36■■□□□ 1.97
SDC3-202ENST00000339394 LRRCC1Q9C099 1032 aa27.36■■□□□ 1.97
SDC3-202ENST00000339394 TAOK3Q9H2K8 898 aa27.36■■□□□ 1.97
SDC3-202ENST00000339394 FGFR2P21802 821 aa27.35■■□□□ 1.97
SDC3-202ENST00000339394 GPR101Q96P66 508 aaPredicted RBP27.35■■□□□ 1.97
SDC3-202ENST00000339394 AKAP2Q9Y2D5 859 aa27.35■■□□□ 1.97
SDC3-202ENST00000339394 IL1RAPL2Q9NP60 686 aa27.35■■□□□ 1.97
SDC3-202ENST00000339394 GRIN3BO60391 1043 aa27.34■■□□□ 1.97
SDC3-202ENST00000339394 TIMM10P62072 90 aa27.34■■□□□ 1.97
SDC3-202ENST00000339394 ATP2B3Q16720 1220 aa27.34■■□□□ 1.97
SDC3-202ENST00000339394 B4GALNT3Q6L9W6 998 aa27.34■■□□□ 1.97
SDC3-202ENST00000339394 SUPT20HQ8NEM7 779 aa27.34■■□□□ 1.97
SDC3-202ENST00000339394 LPIN2Q92539 896 aa27.34■■□□□ 1.97
SDC3-202ENST00000339394 GPR108Q9NPR9 543 aa27.34■■□□□ 1.97
SDC3-202ENST00000339394 ZNF277Q9NRM2 450 aaPredicted RBP27.33■■□□□ 1.97
SDC3-202ENST00000339394 ARFGEF1Q9Y6D6 1849 aa27.33■■□□□ 1.97
SDC3-202ENST00000339394 DUOX1Q9NRD9 1551 aa27.33■■□□□ 1.97
SDC3-202ENST00000339394 A0A1B0GUL7 405 aa27.32■■□□□ 1.96
SDC3-202ENST00000339394 SMARCA5O60264 1052 aaPredicted RBP27.32■■□□□ 1.96
SDC3-202ENST00000339394 KLRK1P26718 216 aa27.32■■□□□ 1.96
SDC3-202ENST00000339394 RASSF7Q02833 373 aa27.32■■□□□ 1.96
SDC3-202ENST00000339394 WASHC4Q2M389 1173 aa27.32■■□□□ 1.96
SDC3-202ENST00000339394 TNNI3KQ59H18 835 aa27.32■■□□□ 1.96
SDC3-202ENST00000339394 ANKRD45Q5TZF3 282 aa27.32■■□□□ 1.96
SDC3-202ENST00000339394 BCL11AQ9H165 835 aa27.32■■□□□ 1.96
SDC3-202ENST00000339394 FPGT-TNNI3KV9GXZ4 949 aa27.32■■□□□ 1.96
SDC3-202ENST00000339394 LTBP3Q9NS15 1303 aa27.32■■□□□ 1.96
SDC3-202ENST00000339394 LTBP1Q14766 1721 aa27.31■■□□□ 1.96
SDC3-202ENST00000339394 TXNRD3Q86VQ6 643 aa27.31■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms