RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 HSP90B1P14625 803 aaKnown RBP20.51■□□□□ 0.87
PDLIM1-201ENST00000329399 AOC3Q16853 763 aa20.51■□□□□ 0.87
PDLIM1-201ENST00000329399 DPP8Q6V1X1 898 aaPredicted RBP20.51■□□□□ 0.87
PDLIM1-201ENST00000329399 ZNF541Q9H0D2 1346 aa20.51■□□□□ 0.87
PDLIM1-201ENST00000329399 SUCLG2Q96I99 432 aa20.5■□□□□ 0.87
PDLIM1-201ENST00000329399 USP44Q9H0E7 712 aa20.5■□□□□ 0.87
PDLIM1-201ENST00000329399 C9orf78Q9NZ63 289 aaPredicted RBP20.5■□□□□ 0.87
PDLIM1-201ENST00000329399 NSFL1CQ9UNZ2 370 aaKnown RBP20.5■□□□□ 0.87
PDLIM1-201ENST00000329399 TIAM2Q8IVF5 1701 aa20.5■□□□□ 0.87
PDLIM1-201ENST00000329399 DUOX1Q9NRD9 1551 aa20.5■□□□□ 0.87
PDLIM1-201ENST00000329399 ZC3H4Q9UPT8 1303 aaKnown RBP20.49■□□□□ 0.87
PDLIM1-201ENST00000329399 FZD9O00144 591 aa20.49■□□□□ 0.87
PDLIM1-201ENST00000329399 ITGA6P23229 1130 aa20.49■□□□□ 0.87
PDLIM1-201ENST00000329399 LMBR1LQ6UX01 489 aa20.49■□□□□ 0.87
PDLIM1-201ENST00000329399 ANKRD18AQ8IVF6 992 aa20.49■□□□□ 0.87
PDLIM1-201ENST00000329399 LARGE2Q8N3Y3 721 aa20.49■□□□□ 0.87
PDLIM1-201ENST00000329399 UTYO14607 1347 aa20.48■□□□□ 0.87
PDLIM1-201ENST00000329399 GRIPAP1Q4V328 841 aa20.48■□□□□ 0.87
PDLIM1-201ENST00000329399 TMC4Q7Z404 712 aa20.48■□□□□ 0.87
PDLIM1-201ENST00000329399 PCDHB15Q9Y5E8 787 aa20.48■□□□□ 0.87
PDLIM1-201ENST00000329399 RTL9Q8NET4 1388 aa20.47■□□□□ 0.87
PDLIM1-201ENST00000329399 LRRC37AA6NMS7 1700 aa20.47■□□□□ 0.87
PDLIM1-201ENST00000329399 PPIP5K2O43314 1243 aa20.47■□□□□ 0.87
PDLIM1-201ENST00000329399 TMX4Q9H1E5 349 aaPredicted RBP20.47■□□□□ 0.87
PDLIM1-201ENST00000329399 MINPP1Q9UNW1 487 aa20.47■□□□□ 0.87
PDLIM1-201ENST00000329399 MYH3P11055 1940 aa20.47■□□□□ 0.87
PDLIM1-201ENST00000329399 TBC1D16Q8TBP0 767 aa20.46■□□□□ 0.87
PDLIM1-201ENST00000329399 ZNF594Q96JF6 807 aaPredicted RBP20.46■□□□□ 0.87
PDLIM1-201ENST00000329399 RIMBP2O15034 1052 aa20.45■□□□□ 0.86
PDLIM1-201ENST00000329399 KIAA2012Q0VF49 1180 aa20.45■□□□□ 0.86
PDLIM1-201ENST00000329399 CDC5LQ99459 802 aaKnown RBP20.45■□□□□ 0.86
PDLIM1-201ENST00000329399 BSDC1Q9NW68 430 aaPredicted RBP20.45■□□□□ 0.86
PDLIM1-201ENST00000329399 C6orf229H3BNL8 230 aa20.44■□□□□ 0.86
PDLIM1-201ENST00000329399 C1QTNF8P60827 252 aa20.44■□□□□ 0.86
PDLIM1-201ENST00000329399 DPY19L2Q6NUT2 758 aa20.44■□□□□ 0.86
PDLIM1-201ENST00000329399 ANKRD44Q8N8A2 993 aa20.44■□□□□ 0.86
PDLIM1-201ENST00000329399 JDP2Q8WYK2 163 aa20.44■□□□□ 0.86
PDLIM1-201ENST00000329399 BICC1Q9H694 974 aaKnown RBP20.44■□□□□ 0.86
PDLIM1-201ENST00000329399 KCNQ5Q9NR82 932 aa20.44■□□□□ 0.86
PDLIM1-201ENST00000329399 PODXL2Q9NZ53 605 aa20.44■□□□□ 0.86
PDLIM1-201ENST00000329399 CHMP3Q9Y3E7 222 aa20.44■□□□□ 0.86
PDLIM1-201ENST00000329399 LTBP1Q14766 1721 aa20.44■□□□□ 0.86
PDLIM1-201ENST00000329399 YDJCA8MPS7 323 aa20.43■□□□□ 0.86
PDLIM1-201ENST00000329399 SNAP23O00161 211 aa20.43■□□□□ 0.86
PDLIM1-201ENST00000329399 IGHDP01880 384 aa20.43■□□□□ 0.86
PDLIM1-201ENST00000329399 RPAP2Q8IXW5 612 aaPredicted RBP20.43■□□□□ 0.86
PDLIM1-201ENST00000329399 ANKIB1Q9P2G1 1089 aa20.43■□□□□ 0.86
PDLIM1-201ENST00000329399 HDAC5Q9UQL6 1122 aa20.43■□□□□ 0.86
PDLIM1-201ENST00000329399 GNAI3P08754 354 aa20.43■□□□□ 0.86
PDLIM1-201ENST00000329399 WASHC4Q2M389 1173 aa20.43■□□□□ 0.86
PDLIM1-201ENST00000329399 SUPT20HQ8NEM7 779 aa20.43■□□□□ 0.86
PDLIM1-201ENST00000329399 UFL1O94874 794 aa20.42■□□□□ 0.86
PDLIM1-201ENST00000329399 DOK7Q18PE1 504 aa20.42■□□□□ 0.86
PDLIM1-201ENST00000329399 NIM1KQ8IY84 436 aa20.42■□□□□ 0.86
PDLIM1-201ENST00000329399 ANKRD18BA2A2Z9 1011 aa20.41■□□□□ 0.86
PDLIM1-201ENST00000329399 VEGFAP15692 232 aaPredicted RBP20.41■□□□□ 0.86
PDLIM1-201ENST00000329399 CXCL9Q07325 125 aa20.41■□□□□ 0.86
PDLIM1-201ENST00000329399 IFIT5Q13325 482 aaKnown RBP20.41■□□□□ 0.86
PDLIM1-201ENST00000329399 HELBQ8NG08 1087 aaPredicted RBP20.41■□□□□ 0.86
PDLIM1-201ENST00000329399 GCC1Q96CN9 775 aa20.41■□□□□ 0.86
PDLIM1-201ENST00000329399 VPS33BQ9H267 617 aa20.41■□□□□ 0.86
PDLIM1-201ENST00000329399 DBNDD1Q9H9R9 158 aa20.41■□□□□ 0.86
PDLIM1-201ENST00000329399 ZNRF3Q9ULT6 936 aa20.41■□□□□ 0.86
PDLIM1-201ENST00000329399 POTEIP0CG38 1075 aa20.4■□□□□ 0.86
PDLIM1-201ENST00000329399 POTEJP0CG39 1038 aa20.4■□□□□ 0.86
PDLIM1-201ENST00000329399 IGHMBP2P38935 993 aaKnown RBP20.4■□□□□ 0.86
PDLIM1-201ENST00000329399 RABL6Q3YEC7 729 aaPredicted RBP20.4■□□□□ 0.86
PDLIM1-201ENST00000329399 MEIS3Q99687 375 aa20.4■□□□□ 0.86
PDLIM1-201ENST00000329399 PUS3Q9BZE2 481 aaKnown RBP20.4■□□□□ 0.86
PDLIM1-201ENST00000329399 GGA1Q9UJY5 639 aa20.4■□□□□ 0.86
PDLIM1-201ENST00000329399 GJA3Q9Y6H8 435 aa20.4■□□□□ 0.86
PDLIM1-201ENST00000329399 SPEF2Q9C093 1822 aa20.4■□□□□ 0.86
PDLIM1-201ENST00000329399 RAD17O75943 681 aa20.39■□□□□ 0.85
PDLIM1-201ENST00000329399 KLRK1P26718 216 aa20.39■□□□□ 0.85
PDLIM1-201ENST00000329399 TXNRD3Q86VQ6 643 aa20.39■□□□□ 0.85
PDLIM1-201ENST00000329399 SMC5Q8IY18 1101 aa20.39■□□□□ 0.85
PDLIM1-201ENST00000329399 KLHDC4Q8TBB5 520 aa20.39■□□□□ 0.85
PDLIM1-201ENST00000329399 L3MBTL3Q96JM7 780 aaPredicted RBP20.39■□□□□ 0.85
PDLIM1-201ENST00000329399 XDHP47989 1333 aa20.39■□□□□ 0.85
PDLIM1-201ENST00000329399 TAF5LO75529 589 aa20.38■□□□□ 0.85
PDLIM1-201ENST00000329399 EIF6P56537 245 aaKnown RBP20.38■□□□□ 0.85
PDLIM1-201ENST00000329399 CHRNDQ07001 517 aa20.38■□□□□ 0.85
PDLIM1-201ENST00000329399 MPHOSPH8Q99549 860 aa20.38■□□□□ 0.85
PDLIM1-201ENST00000329399 WDR90Q96KV7 1748 aa20.38■□□□□ 0.85
PDLIM1-201ENST00000329399 TOMM70O94826 608 aa20.37■□□□□ 0.85
PDLIM1-201ENST00000329399 CCDC57Q2TAC2 916 aa20.37■□□□□ 0.85
PDLIM1-201ENST00000329399 GPC2Q8N158 579 aa20.37■□□□□ 0.85
PDLIM1-201ENST00000329399 TSHZ2Q9NRE2 1034 aa20.37■□□□□ 0.85
PDLIM1-201ENST00000329399 SHTN1A0MZ66 631 aa20.36■□□□□ 0.85
PDLIM1-201ENST00000329399 HMMRO75330 724 aa20.36■□□□□ 0.85
PDLIM1-201ENST00000329399 ATP2B4P23634 1241 aa20.36■□□□□ 0.85
PDLIM1-201ENST00000329399 EPS15P42566 896 aa20.36■□□□□ 0.85
PDLIM1-201ENST00000329399 SCNN1DP51172 638 aa20.36■□□□□ 0.85
PDLIM1-201ENST00000329399 ZC3H12CQ9C0D7 883 aaKnown RBP20.36■□□□□ 0.85
PDLIM1-201ENST00000329399 TAF1DQ9H5J8 278 aaPredicted RBP20.36■□□□□ 0.85
PDLIM1-201ENST00000329399 ECE2O60344 883 aa20.35■□□□□ 0.85
PDLIM1-201ENST00000329399 GNAI2P04899 355 aa20.35■□□□□ 0.85
PDLIM1-201ENST00000329399 RFX5P48382 616 aaPredicted RBP20.35■□□□□ 0.85
PDLIM1-201ENST00000329399 LRRC24Q50LG9 513 aa20.35■□□□□ 0.85
PDLIM1-201ENST00000329399 LDHAL6AQ6ZMR3 332 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms