RNA–Protein interactions for RNA: ENST00000324771.12

DDR1-223, Transcript of discoidin domain receptor tyrosine kinase 1, human

APPRIS ALT2 TSL 5 BASIC

Gene DDR1, Length 4,148 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-223	ENST00000324771	JMY	Q8N9B5	988 aa		13.82	□□□□□ -0.2
DDR1-223	ENST00000324771	DACT1	Q9NYF0	836 aa		13.82	□□□□□ -0.2
DDR1-223	ENST00000324771	RUFY3	Q7L099	469 aa		13.82	□□□□□ -0.2
DDR1-223	ENST00000324771	HMG20B	Q9P0W2	317 aa		13.82	□□□□□ -0.2
DDR1-223	ENST00000324771	DIP2C	Q9Y2E4	1556 aa		13.82	□□□□□ -0.2
DDR1-223	ENST00000324771	MCM5	P33992	734 aa		13.82	□□□□□ -0.2
DDR1-223	ENST00000324771	IARS	P41252	1262 aa	Known RBP	13.82	□□□□□ -0.2
DDR1-223	ENST00000324771	ZAP70	P43403	619 aa		13.82	□□□□□ -0.2
DDR1-223	ENST00000324771	METAP2	P50579	478 aa	Known RBP eCLIP	13.82	□□□□□ -0.2	6e-6	■■■■□ 24.8
DDR1-223	ENST00000324771	ADCK5	Q3MIX3	580 aa		13.82	□□□□□ -0.2
DDR1-223	ENST00000324771	MFSD6	Q6ZSS7	791 aa		13.82	□□□□□ -0.2
DDR1-223	ENST00000324771	PNPLA6	Q8IY17	1366 aa		13.81	□□□□□ -0.2
DDR1-223	ENST00000324771	JAK2	O60674	1132 aa		13.81	□□□□□ -0.2
DDR1-223	ENST00000324771	CDKL5	O76039	1030 aa		13.81	□□□□□ -0.2
DDR1-223	ENST00000324771	TPM3	P06753	285 aa		13.81	□□□□□ -0.2
DDR1-223	ENST00000324771	RPGR	Q92834	1020 aa	Known RBP	13.81	□□□□□ -0.2
DDR1-223	ENST00000324771	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.81	□□□□□ -0.2
DDR1-223	ENST00000324771	PTPRM	P28827	1452 aa		13.81	□□□□□ -0.2
DDR1-223	ENST00000324771	GNPAT	O15228	680 aa		13.81	□□□□□ -0.2
DDR1-223	ENST00000324771	PRDM1	O75626	825 aa		13.81	□□□□□ -0.2
DDR1-223	ENST00000324771	EPHA10	Q5JZY3	1008 aa		13.81	□□□□□ -0.2
DDR1-223	ENST00000324771	CCDC191	Q8NCU4	936 aa		13.81	□□□□□ -0.2
DDR1-223	ENST00000324771	NLRP3	Q96P20	1036 aa		13.81	□□□□□ -0.2
DDR1-223	ENST00000324771	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.81	□□□□□ -0.2
DDR1-223	ENST00000324771	GADD45B	O75293	160 aa	Predicted RBP	13.81	□□□□□ -0.2
DDR1-223	ENST00000324771	TSR1	Q2NL82	804 aa	Known RBP	13.81	□□□□□ -0.2
DDR1-223	ENST00000324771	STX8	Q9UNK0	236 aa		13.81	□□□□□ -0.2
DDR1-223	ENST00000324771	RAD50	Q92878	1312 aa		13.81	□□□□□ -0.2
DDR1-223	ENST00000324771	MPHOSPH10	O00566	681 aa	Known RBP	13.8	□□□□□ -0.2
DDR1-223	ENST00000324771	HMGN5	P82970	282 aa	Known RBP	13.8	□□□□□ -0.2
DDR1-223	ENST00000324771	PI16	Q6UXB8	463 aa		13.8	□□□□□ -0.2
DDR1-223	ENST00000324771	SYNE4	Q8N205	404 aa		13.8	□□□□□ -0.2
DDR1-223	ENST00000324771	QRICH2	Q9H0J4	1663 aa		13.8	□□□□□ -0.2
DDR1-223	ENST00000324771	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.8	□□□□□ -0.2
DDR1-223	ENST00000324771	ARHGEF40	Q8TER5	1519 aa		13.8	□□□□□ -0.2
DDR1-223	ENST00000324771	SNAP23	O00161	211 aa		13.8	□□□□□ -0.2
DDR1-223	ENST00000324771	SSB	P05455	408 aa	Known RBP eCLIP	13.8	□□□□□ -0.2
DDR1-223	ENST00000324771	ZHX3	Q9H4I2	956 aa		13.8	□□□□□ -0.2
DDR1-223	ENST00000324771	ZBTB1	Q9Y2K1	713 aa		13.8	□□□□□ -0.2
DDR1-223	ENST00000324771	INO80	Q9ULG1	1556 aa	Predicted RBP	13.8	□□□□□ -0.2
DDR1-223	ENST00000324771	UBE2H	P62256	183 aa		13.8	□□□□□ -0.2
DDR1-223	ENST00000324771	MYL10	Q9BUA6	226 aa		13.8	□□□□□ -0.2
DDR1-223	ENST00000324771	DBNL	Q9UJU6	430 aa	Known RBP	13.8	□□□□□ -0.2
DDR1-223	ENST00000324771	IQCA1	Q86XH1	822 aa		13.79	□□□□□ -0.2
DDR1-223	ENST00000324771	NOC3L	Q8WTT2	800 aa	Known RBP	13.79	□□□□□ -0.2
DDR1-223	ENST00000324771	CPS1	P31327	1500 aa		13.79	□□□□□ -0.2
DDR1-223	ENST00000324771	ZSCAN30	Q86W11	494 aa		13.79	□□□□□ -0.2
DDR1-223	ENST00000324771	CCAR1	Q8IX12	1150 aa	Known RBP	13.79	□□□□□ -0.2
DDR1-223	ENST00000324771	SH3TC1	Q8TE82	1336 aa		13.79	□□□□□ -0.2
DDR1-223	ENST00000324771	TSPY2	A6NKD2	308 aa		13.79	□□□□□ -0.2
DDR1-223	ENST00000324771	TPM1	P09493	284 aa		13.79	□□□□□ -0.2
DDR1-223	ENST00000324771	CEP57L1	Q8IYX8	460 aa		13.79	□□□□□ -0.2
DDR1-223	ENST00000324771		B4E1Z4	1266 aa		13.79	□□□□□ -0.2
DDR1-223	ENST00000324771	MBD4	O95243	580 aa		13.79	□□□□□ -0.2
DDR1-223	ENST00000324771	ADCY5	O95622	1261 aa		13.79	□□□□□ -0.2
DDR1-223	ENST00000324771	HSPA4	P34932	840 aa		13.79	□□□□□ -0.2
DDR1-223	ENST00000324771	TCIRG1	Q13488	830 aa		13.79	□□□□□ -0.2
DDR1-223	ENST00000324771	BRINP3	Q76B58	766 aa		13.79	□□□□□ -0.2
DDR1-223	ENST00000324771	PTPDC1	A2A3K4	754 aa		13.78	□□□□□ -0.2
DDR1-223	ENST00000324771	ADORA1	P30542	326 aa		13.78	□□□□□ -0.2
DDR1-223	ENST00000324771	ZNF165	P49910	485 aa		13.78	□□□□□ -0.2
DDR1-223	ENST00000324771	TTF1	Q15361	905 aa	Predicted RBP	13.78	□□□□□ -0.2
DDR1-223	ENST00000324771	DHX32	Q7L7V1	743 aa	Known RBP	13.78	□□□□□ -0.2
DDR1-223	ENST00000324771	TFCP2L1	Q9NZI6	479 aa		13.78	□□□□□ -0.2
DDR1-223	ENST00000324771	RRP9	O43818	475 aa	Known RBP	13.78	□□□□□ -0.2
DDR1-223	ENST00000324771	LRRC7	Q96NW7	1537 aa		13.78	□□□□□ -0.2
DDR1-223	ENST00000324771	ZBTB43	O43298	467 aa		13.78	□□□□□ -0.2
DDR1-223	ENST00000324771	KBTBD3	Q8NAB2	608 aa		13.78	□□□□□ -0.2
DDR1-223	ENST00000324771	CTCFL	Q8NI51	663 aa	Predicted RBP	13.78	□□□□□ -0.2
DDR1-223	ENST00000324771	ZNF622	Q969S3	477 aa	Known RBP eCLIP	13.78	□□□□□ -0.2
DDR1-223	ENST00000324771	ALG1	Q9BT22	464 aa		13.78	□□□□□ -0.2
DDR1-223	ENST00000324771	ANTXR1	Q9H6X2	564 aa		13.78	□□□□□ -0.2
DDR1-223	ENST00000324771	ARMT1	Q9H993	441 aa		13.78	□□□□□ -0.2
DDR1-223	ENST00000324771	CTDP1	Q9Y5B0	961 aa	Predicted RBP	13.78	□□□□□ -0.2
DDR1-223	ENST00000324771	ANKRD20A12P	Q8NF67	263 aa		13.77	□□□□□ -0.2
DDR1-223	ENST00000324771	SASH1	O94885	1247 aa		13.77	□□□□□ -0.21
DDR1-223	ENST00000324771	IGKV5-2	P06315	115 aa		13.77	□□□□□ -0.21
DDR1-223	ENST00000324771	UQCRFS1P1	P0C7P4	283 aa		13.77	□□□□□ -0.21
DDR1-223	ENST00000324771	ME3	Q16798	604 aa		13.77	□□□□□ -0.21
DDR1-223	ENST00000324771	ZNF444	Q8N0Y2	327 aa	Predicted RBP	13.77	□□□□□ -0.21
DDR1-223	ENST00000324771	NEXMIF	Q5QGS0	1516 aa		13.77	□□□□□ -0.21
DDR1-223	ENST00000324771	GPAA1	O43292	621 aa		13.77	□□□□□ -0.21
DDR1-223	ENST00000324771	NAA16	Q6N069	864 aa	Predicted RBP	13.77	□□□□□ -0.21
DDR1-223	ENST00000324771	ERCC4	Q92889	916 aa	Predicted RBP	13.77	□□□□□ -0.21
DDR1-223	ENST00000324771	SSRP1	Q08945	709 aa	Known RBP	13.76	□□□□□ -0.21
DDR1-223	ENST00000324771	TRMT1L	Q7Z2T5	733 aa	Known RBP	13.76	□□□□□ -0.21
DDR1-223	ENST00000324771	ZFY	P08048	801 aa	Predicted RBP	13.76	□□□□□ -0.21
DDR1-223	ENST00000324771	CFAP100	Q494V2	611 aa		13.76	□□□□□ -0.21
DDR1-223	ENST00000324771	LRSAM1	Q6UWE0	723 aa		13.76	□□□□□ -0.21
DDR1-223	ENST00000324771	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.76	□□□□□ -0.21
DDR1-223	ENST00000324771	GREM2	Q9H772	168 aa		13.76	□□□□□ -0.21
DDR1-223	ENST00000324771	TTC12	Q9H892	705 aa	Predicted RBP	13.76	□□□□□ -0.21
DDR1-223	ENST00000324771	CPSF1	Q10570	1443 aa	Known RBP	13.76	□□□□□ -0.21
DDR1-223	ENST00000324771	hCG_1642624	A0A1W2PR95	340 aa		13.76	□□□□□ -0.21
DDR1-223	ENST00000324771	RIMBP2	O15034	1052 aa		13.75	□□□□□ -0.21
DDR1-223	ENST00000324771	RPS6KB1	P23443	525 aa		13.75	□□□□□ -0.21
DDR1-223	ENST00000324771	WTAP	Q15007	396 aa		13.75	□□□□□ -0.21
DDR1-223	ENST00000324771	SMIM5	Q71RC9	77 aa		13.75	□□□□□ -0.21
DDR1-223	ENST00000324771	CCDC47	Q96A33	483 aa	Known RBP	13.75	□□□□□ -0.21
DDR1-223	ENST00000324771	RBSN	Q9H1K0	784 aa		13.75	□□□□□ -0.21

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