RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 BIN1O00499 593 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 CNGA4Q8IV77 575 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 ARHGEF5Q12774 1597 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 IFT140Q96RY7 1462 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 GOLGA6BA6NDN3 693 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 LTV1Q96GA3 475 aaPredicted RBP8.04□□□□□ -1.12
SMC1A-201ENST00000322213 CCDC43Q96MW1 224 aaKnown RBP8.04□□□□□ -1.12
SMC1A-201ENST00000322213 ESYT1Q9BSJ8 1104 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 GGNBP2Q9H3C7 697 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 RASAL2Q9UJF2 1139 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 ZFYVE9O95405 1425 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 ERCC3P19447 782 aa8.04□□□□□ -1.12
SMC1A-201ENST00000322213 BAG1Q99933 345 aaPredicted RBP8.04□□□□□ -1.12
SMC1A-201ENST00000322213 RAD51AP2Q09MP3 1159 aa8.03□□□□□ -1.12
SMC1A-201ENST00000322213 FAM71BQ8TC56 605 aa8.03□□□□□ -1.12
SMC1A-201ENST00000322213 NUCKS1Q9H1E3 243 aaKnown RBP8.03□□□□□ -1.12
SMC1A-201ENST00000322213 POLR3AO14802 1390 aaPredicted RBP8.03□□□□□ -1.12
SMC1A-201ENST00000322213 TSNAXIP1Q2TAA8 658 aa8.03□□□□□ -1.12
SMC1A-201ENST00000322213 MEX3CQ5U5Q3 659 aaKnown RBP8.03□□□□□ -1.12
SMC1A-201ENST00000322213 CPLX4Q7Z7G2 160 aa8.03□□□□□ -1.12
SMC1A-201ENST00000322213 MRPS27Q92552 414 aaKnown RBP8.03□□□□□ -1.12
SMC1A-201ENST00000322213 ZSCAN25Q6NSZ9 544 aa8.03□□□□□ -1.12
SMC1A-201ENST00000322213 RHOXF2BP0C7M4 288 aa8.03□□□□□ -1.12
SMC1A-201ENST00000322213 SATB1Q01826 763 aa8.03□□□□□ -1.12
SMC1A-201ENST00000322213 PPP2R5AQ15172 486 aa8.03□□□□□ -1.12
SMC1A-201ENST00000322213 LMNTD2Q8IXW0 634 aa8.03□□□□□ -1.12
SMC1A-201ENST00000322213 RHOXF2Q9BQY4 288 aa8.03□□□□□ -1.12
SMC1A-201ENST00000322213 RLBP1P12271 317 aa8.03□□□□□ -1.12
SMC1A-201ENST00000322213 RNF168Q8IYW5 571 aaPredicted RBP8.03□□□□□ -1.12
SMC1A-201ENST00000322213 CCDC155Q8N6L0 562 aa8.03□□□□□ -1.12
SMC1A-201ENST00000322213 PTPRGP23470 1445 aa8.03□□□□□ -1.12
SMC1A-201ENST00000322213 HDGFL1Q5TGJ6 251 aa8.03□□□□□ -1.12
SMC1A-201ENST00000322213 CCDC102BQ68D86 513 aa8.03□□□□□ -1.12
SMC1A-201ENST00000322213 TMEM51Q9NW97 253 aa8.03□□□□□ -1.12
SMC1A-201ENST00000322213 FAM135BQ49AJ0 1406 aa8.03□□□□□ -1.12
SMC1A-201ENST00000322213 GCKP35557 465 aa8.03□□□□□ -1.12
SMC1A-201ENST00000322213 ARFGAP2Q8N6H7 521 aa8.03□□□□□ -1.12
SMC1A-201ENST00000322213 PRM3Q9NNZ6 103 aa8.03□□□□□ -1.12
SMC1A-201ENST00000322213 ADAMTS12P58397 1594 aa8.02□□□□□ -1.12
SMC1A-201ENST00000322213 GOLGA8BA8MQT2 603 aa8.02□□□□□ -1.12
SMC1A-201ENST00000322213 TTC39AQ5SRH9 613 aa8.02□□□□□ -1.13
SMC1A-201ENST00000322213 CACNA2D4Q7Z3S7 1137 aa8.02□□□□□ -1.13
SMC1A-201ENST00000322213 GPT2Q8TD30 523 aa8.02□□□□□ -1.13
SMC1A-201ENST00000322213 IFNKQ9P0W0 207 aa8.02□□□□□ -1.13
SMC1A-201ENST00000322213 SPATA31E1Q6ZUB1 1445 aa8.02□□□□□ -1.13
SMC1A-201ENST00000322213 ANKRD62A6NC57 917 aa8.02□□□□□ -1.13
SMC1A-201ENST00000322213 ATP8B1O43520 1251 aa8.02□□□□□ -1.13
SMC1A-201ENST00000322213 PPP1R12BO60237 982 aaPredicted RBP8.02□□□□□ -1.13
SMC1A-201ENST00000322213 KRT83P78385 493 aa8.02□□□□□ -1.13
SMC1A-201ENST00000322213 CCDC6Q16204 474 aa8.02□□□□□ -1.13
SMC1A-201ENST00000322213 CYLC1P35663 651 aaPredicted RBP8.02□□□□□ -1.13
SMC1A-201ENST00000322213 CCDC57Q2TAC2 916 aa8.02□□□□□ -1.13
SMC1A-201ENST00000322213 SELENOOQ9BVL4 669 aa8.02□□□□□ -1.13
SMC1A-201ENST00000322213 ATP2B1P20020 1258 aa8.02□□□□□ -1.13
SMC1A-201ENST00000322213 WHAMMP3Q1A5X7 153 aa8.02□□□□□ -1.13
SMC1A-201ENST00000322213 NEK11Q8NG66 645 aa8.02□□□□□ -1.13
SMC1A-201ENST00000322213 NACAP1Q9BZK3 213 aa8.02□□□□□ -1.13
SMC1A-201ENST00000322213 TSPOAP1O95153 1857 aa8.02□□□□□ -1.13
SMC1A-201ENST00000322213 WDHD1O75717 1129 aaPredicted RBP8.02□□□□□ -1.13
SMC1A-201ENST00000322213 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.02□□□□□ -1.13
SMC1A-201ENST00000322213 PDE4DIPQ5VU43 2346 aa8.02□□□□□ -1.13
SMC1A-201ENST00000322213 PRG4Q92954 1404 aaPredicted RBP8.02□□□□□ -1.13
SMC1A-201ENST00000322213 KIF3CO14782 793 aa8.02□□□□□ -1.13
SMC1A-201ENST00000322213 ZFYP08048 801 aaPredicted RBP8.02□□□□□ -1.13
SMC1A-201ENST00000322213 CAMSAP1Q5T5Y3 1602 aa8.01□□□□□ -1.13
SMC1A-201ENST00000322213 ABCA9Q8IUA7 1624 aa8.01□□□□□ -1.13
SMC1A-201ENST00000322213 DAAM2Q86T65 1068 aa8.01□□□□□ -1.13
SMC1A-201ENST00000322213 EXOC4Q96A65 974 aa8.01□□□□□ -1.13
SMC1A-201ENST00000322213 RMND1Q9NWS8 449 aa8.01□□□□□ -1.13
SMC1A-201ENST00000322213 CSB-PGBD3P0DP91 1061 aa8.01□□□□□ -1.13
SMC1A-201ENST00000322213 TRHP20396 242 aaPredicted RBP8.01□□□□□ -1.13
SMC1A-201ENST00000322213 NAPGQ99747 312 aaPredicted RBP8.01□□□□□ -1.13
SMC1A-201ENST00000322213 AEBP2Q6ZN18 517 aaPredicted RBP8.01□□□□□ -1.13
SMC1A-201ENST00000322213 TSG101Q99816 390 aa8.01□□□□□ -1.13
SMC1A-201ENST00000322213 PZPP20742 1482 aa8.01□□□□□ -1.13
SMC1A-201ENST00000322213 KRT18P05783 430 aaKnown RBP8.01□□□□□ -1.13
SMC1A-201ENST00000322213 TMEM63CQ9P1W3 806 aa8.01□□□□□ -1.13
SMC1A-201ENST00000322213 MMS22LQ6ZRQ5 1243 aa8.01□□□□□ -1.13
SMC1A-201ENST00000322213 LRRC8AQ8IWT6 810 aa8.01□□□□□ -1.13
SMC1A-201ENST00000322213 VCXQ9H320 206 aa8.01□□□□□ -1.13
SMC1A-201ENST00000322213 PTPRKQ15262 1439 aa8.01□□□□□ -1.13
SMC1A-201ENST00000322213 NPC1L1Q9UHC9 1359 aa8.01□□□□□ -1.13
SMC1A-201ENST00000322213 SNCBQ16143 134 aa8.01□□□□□ -1.13
SMC1A-201ENST00000322213 PLEKHM2Q8IWE5 1019 aa8.01□□□□□ -1.13
SMC1A-201ENST00000322213 RPGRIP1Q96KN7 1286 aa8.01□□□□□ -1.13
SMC1A-201ENST00000322213 MSH6P52701 1360 aa8.01□□□□□ -1.13
SMC1A-201ENST00000322213 PHLPP2Q6ZVD8 1323 aa8.01□□□□□ -1.13
SMC1A-201ENST00000322213 MAGEA9P43362 315 aa8□□□□□ -1.13
SMC1A-201ENST00000322213 DDX46Q7L014 1031 aaKnown RBP8□□□□□ -1.13
SMC1A-201ENST00000322213 UTP14AQ9BVJ6 771 aaKnown RBP8□□□□□ -1.13
SMC1A-201ENST00000322213 SLC12A5Q9H2X9 1139 aa8□□□□□ -1.13
SMC1A-201ENST00000322213 PPRC1Q5VV67 1664 aaKnown RBP8□□□□□ -1.13
SMC1A-201ENST00000322213 ANKRD18BA2A2Z9 1011 aa8□□□□□ -1.13
SMC1A-201ENST00000322213 FAM160A1Q05DH4 1040 aa8□□□□□ -1.13
SMC1A-201ENST00000322213 ZKSCAN8Q15776 578 aaPredicted RBP8□□□□□ -1.13
SMC1A-201ENST00000322213 SLFNL1Q499Z3 407 aa8□□□□□ -1.13
SMC1A-201ENST00000322213 LZTFL1Q9NQ48 299 aa8□□□□□ -1.13
SMC1A-201ENST00000322213 TFIP11Q9UBB9 837 aaKnown RBP8□□□□□ -1.13
SMC1A-201ENST00000322213 DDX41Q9UJV9 622 aaKnown RBP8□□□□□ -1.13
SMC1A-201ENST00000322213 TTC41PQ6P2S7 1318 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms