RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 VPS18Q9P253 973 aa14.68□□□□□ -0.06
COL3A1-201ENST00000304636 RAPGEF6Q8TEU7 1601 aa14.68□□□□□ -0.06
COL3A1-201ENST00000304636 MARCKSP29966 332 aaPredicted RBP14.68□□□□□ -0.06
COL3A1-201ENST00000304636 WWC2Q6AWC2 1192 aa14.68□□□□□ -0.06
COL3A1-201ENST00000304636 RNF216Q9NWF9 866 aaPredicted RBP14.68□□□□□ -0.06
COL3A1-201ENST00000304636 SOS1Q07889 1333 aaPredicted RBP14.68□□□□□ -0.06
COL3A1-201ENST00000304636 KRT83P78385 493 aa14.68□□□□□ -0.06
COL3A1-201ENST00000304636 LRRC27Q9C0I9 530 aa14.68□□□□□ -0.06
COL3A1-201ENST00000304636 CCDC96Q2M329 555 aa14.67□□□□□ -0.06
COL3A1-201ENST00000304636 HSP90AA4PQ58FG1 418 aa14.67□□□□□ -0.06
COL3A1-201ENST00000304636 BRAPQ7Z569 592 aa14.67□□□□□ -0.06
COL3A1-201ENST00000304636 ZFYVE9O95405 1425 aa14.67□□□□□ -0.06
COL3A1-201ENST00000304636 FBLN1P23142 703 aa14.67□□□□□ -0.06
COL3A1-201ENST00000304636 ZNF444Q8N0Y2 327 aaPredicted RBP14.67□□□□□ -0.06
COL3A1-201ENST00000304636 TMTC2Q8N394 836 aa14.67□□□□□ -0.06
COL3A1-201ENST00000304636 KRT23Q9C075 422 aa14.67□□□□□ -0.06
COL3A1-201ENST00000304636 POLKQ9UBT6 870 aa14.67□□□□□ -0.06
COL3A1-201ENST00000304636 KDM5BQ9UGL1 1544 aa14.67□□□□□ -0.06
COL3A1-201ENST00000304636 AFMP43652 599 aa14.67□□□□□ -0.06
COL3A1-201ENST00000304636 NOP2P46087 812 aaKnown RBP14.67□□□□□ -0.06
COL3A1-201ENST00000304636 GRM8O00222 908 aa14.67□□□□□ -0.06
COL3A1-201ENST00000304636 EBAG9O00559 213 aa14.67□□□□□ -0.06
COL3A1-201ENST00000304636 TACC1O75410 805 aa14.67□□□□□ -0.06
COL3A1-201ENST00000304636 HDXQ7Z353 690 aa14.67□□□□□ -0.06
COL3A1-201ENST00000304636 PPP1R9BQ96SB3 815 aa14.67□□□□□ -0.06
COL3A1-201ENST00000304636 CD109Q6YHK3 1445 aa14.66□□□□□ -0.06
COL3A1-201ENST00000304636 DESP17661 470 aa14.66□□□□□ -0.06
COL3A1-201ENST00000304636 NF2P35240 595 aa14.66□□□□□ -0.06
COL3A1-201ENST00000304636 TTC31Q49AM3 519 aaPredicted RBP14.66□□□□□ -0.06
COL3A1-201ENST00000304636 TMOD3Q9NYL9 352 aa14.66□□□□□ -0.06
COL3A1-201ENST00000304636 KRT86O43790 486 aa14.66□□□□□ -0.06
COL3A1-201ENST00000304636 FAM160A1Q05DH4 1040 aa14.66□□□□□ -0.06
COL3A1-201ENST00000304636 WTAPQ15007 396 aa14.66□□□□□ -0.06
COL3A1-201ENST00000304636 EXOC1Q9NV70 894 aa14.66□□□□□ -0.06
COL3A1-201ENST00000304636 TRMT112Q9UI30 125 aaKnown RBP14.66□□□□□ -0.06
COL3A1-201ENST00000304636 ACEP12821 1306 aa14.66□□□□□ -0.06
COL3A1-201ENST00000304636 ZNF500O60304 480 aaPredicted RBP14.66□□□□□ -0.06
COL3A1-201ENST00000304636 UBA5Q9GZZ9 404 aa14.66□□□□□ -0.06
COL3A1-201ENST00000304636 RASSF4Q9H2L5 321 aa14.66□□□□□ -0.06
COL3A1-201ENST00000304636 CNNM2Q9H8M5 875 aa14.66□□□□□ -0.06
COL3A1-201ENST00000304636 PHF8Q9UPP1 1060 aa14.66□□□□□ -0.06
COL3A1-201ENST00000304636 PTPDC1A2A3K4 754 aa14.66□□□□□ -0.06
COL3A1-201ENST00000304636 KSR2Q6VAB6 950 aa14.66□□□□□ -0.06
COL3A1-201ENST00000304636 ANKRD13DQ6ZTN6 518 aa14.66□□□□□ -0.06
COL3A1-201ENST00000304636 MICALL1Q8N3F8 863 aa14.66□□□□□ -0.06
COL3A1-201ENST00000304636 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.66□□□□□ -0.06
COL3A1-201ENST00000304636 IDEP14735 1019 aa14.65□□□□□ -0.06
COL3A1-201ENST00000304636 LDHAL6AQ6ZMR3 332 aa14.65□□□□□ -0.06
COL3A1-201ENST00000304636 ATP5J2-PTCD1G3V325 749 aa14.65□□□□□ -0.06
COL3A1-201ENST00000304636 GTF3C6Q969F1 213 aa14.65□□□□□ -0.06
COL3A1-201ENST00000304636 CLSTN2Q9H4D0 955 aa14.65□□□□□ -0.06
COL3A1-201ENST00000304636 ANXA1P04083 346 aa14.65□□□□□ -0.06
COL3A1-201ENST00000304636 UQCRFS1P1P0C7P4 283 aa14.65□□□□□ -0.06
COL3A1-201ENST00000304636 U2AF2P26368 475 aaKnown RBP eCLIP14.65□□□□□ -0.06
COL3A1-201ENST00000304636 UTP14AQ9BVJ6 771 aaKnown RBP14.65□□□□□ -0.06
COL3A1-201ENST00000304636 NBPF7P0C2Y1 421 aaPredicted RBP14.65□□□□□ -0.06
COL3A1-201ENST00000304636 ZNF75DP51815 510 aa14.65□□□□□ -0.06
COL3A1-201ENST00000304636 EVCP57679 992 aa14.65□□□□□ -0.06
COL3A1-201ENST00000304636 DHX32Q7L7V1 743 aaKnown RBP14.65□□□□□ -0.06
COL3A1-201ENST00000304636 ZNF652Q9Y2D9 606 aa14.65□□□□□ -0.06
COL3A1-201ENST00000304636 MSH6P52701 1360 aa14.65□□□□□ -0.06
COL3A1-201ENST00000304636 MYO1BO43795 1136 aa14.64□□□□□ -0.07
COL3A1-201ENST00000304636 CNKSR2Q8WXI2 1034 aa14.64□□□□□ -0.07
COL3A1-201ENST00000304636 AOX1Q06278 1338 aa14.64□□□□□ -0.07
COL3A1-201ENST00000304636 MYL5Q02045 173 aa14.64□□□□□ -0.07
COL3A1-201ENST00000304636 ZNF569Q5MCW4 686 aa14.64□□□□□ -0.07
COL3A1-201ENST00000304636 DZIP1Q86YF9 867 aaKnown RBP14.64□□□□□ -0.07
COL3A1-201ENST00000304636 PRC1O43663 620 aa14.64□□□□□ -0.07
COL3A1-201ENST00000304636 KARSQ15046 597 aaKnown RBP14.64□□□□□ -0.07
COL3A1-201ENST00000304636 RTN1Q16799 776 aa14.64□□□□□ -0.07
COL3A1-201ENST00000304636 PSMA7O14818 248 aa14.64□□□□□ -0.07
COL3A1-201ENST00000304636 SNRPA1P09661 255 aaKnown RBP14.64□□□□□ -0.07
COL3A1-201ENST00000304636 ZBTB3Q9H5J0 574 aa14.64□□□□□ -0.07
COL3A1-201ENST00000304636 LZTFL1Q9NQ48 299 aa14.64□□□□□ -0.07
COL3A1-201ENST00000304636 PUF60Q9UHX1 559 aaKnown RBP14.64□□□□□ -0.07
COL3A1-201ENST00000304636 TEX14Q8IWB6 1497 aa14.64□□□□□ -0.07
COL3A1-201ENST00000304636 STAT6P42226 847 aa14.64□□□□□ -0.07
COL3A1-201ENST00000304636 PRPF4BQ13523 1007 aaKnown RBP14.64□□□□□ -0.07
COL3A1-201ENST00000304636 EIF4A2Q14240 407 aaKnown RBP14.64□□□□□ -0.07
COL3A1-201ENST00000304636 BAG1Q99933 345 aaPredicted RBP14.64□□□□□ -0.07
COL3A1-201ENST00000304636 BICRAQ9NZM4 1560 aa14.63□□□□□ -0.07
COL3A1-201ENST00000304636 TTC21AQ8NDW8 1320 aa14.63□□□□□ -0.07
COL3A1-201ENST00000304636 CETN1Q12798 172 aa14.63□□□□□ -0.07
COL3A1-201ENST00000304636 KIF5AQ12840 1032 aa14.63□□□□□ -0.07
COL3A1-201ENST00000304636 ATRIPQ8WXE1 791 aa14.63□□□□□ -0.07
COL3A1-201ENST00000304636 AMOTL2Q9Y2J4 779 aa14.63□□□□□ -0.07
COL3A1-201ENST00000304636 APOBRQ0VD83 1088 aa14.63□□□□□ -0.07
COL3A1-201ENST00000304636 ZSCAN29Q8IWY8 852 aaPredicted RBP14.63□□□□□ -0.07
COL3A1-201ENST00000304636 CCDC155Q8N6L0 562 aa14.63□□□□□ -0.07
COL3A1-201ENST00000304636 NSRP1Q9H0G5 558 aaKnown RBP14.63□□□□□ -0.07
COL3A1-201ENST00000304636 FANCAO15360 1455 aa14.63□□□□□ -0.07
COL3A1-201ENST00000304636 PZPP20742 1482 aa14.63□□□□□ -0.07
COL3A1-201ENST00000304636 PPP2R3AQ06190 1150 aa14.63□□□□□ -0.07
COL3A1-201ENST00000304636 PDE4BQ07343 736 aa14.63□□□□□ -0.07
COL3A1-201ENST00000304636 TUBB2AQ13885 445 aa14.63□□□□□ -0.07
COL3A1-201ENST00000304636 CTNNBL1Q8WYA6 563 aaPredicted RBP14.63□□□□□ -0.07
COL3A1-201ENST00000304636 TUBB2BQ9BVA1 445 aa14.63□□□□□ -0.07
COL3A1-201ENST00000304636 KAT14Q9H8E8 782 aa14.63□□□□□ -0.07
COL3A1-201ENST00000304636 TNIP1Q15025 636 aa14.62□□□□□ -0.07
COL3A1-201ENST00000304636 FBXO31Q5XUX0 539 aaPredicted RBP14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms