RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 FERMT3Q86UX7 667 aa13.71□□□□□ -0.21
CUX1-202ENST00000292538 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.71□□□□□ -0.21
CUX1-202ENST00000292538 GTF2E1P29083 439 aaPredicted RBP13.7□□□□□ -0.22
CUX1-202ENST00000292538 TTLL5Q6EMB2 1281 aa13.7□□□□□ -0.22
CUX1-202ENST00000292538 INTS4Q96HW7 963 aaKnown RBP13.7□□□□□ -0.22
CUX1-202ENST00000292538 NSFL1CQ9UNZ2 370 aaKnown RBP13.7□□□□□ -0.22
CUX1-202ENST00000292538 AKAP2Q9Y2D5 859 aa13.7□□□□□ -0.22
CUX1-202ENST00000292538 COL15A1P39059 1388 aa13.7□□□□□ -0.22
CUX1-202ENST00000292538 PLEKHG2Q9H7P9 1386 aa13.7□□□□□ -0.22
CUX1-202ENST00000292538 IDH1O75874 414 aaKnown RBP13.7□□□□□ -0.22
CUX1-202ENST00000292538 IL6STP40189 918 aaPredicted RBP13.7□□□□□ -0.22
CUX1-202ENST00000292538 INTS5Q6P9B9 1019 aaKnown RBP13.7□□□□□ -0.22
CUX1-202ENST00000292538 ZNF609O15014 1411 aa13.7□□□□□ -0.22
CUX1-202ENST00000292538 BRD1O95696 1058 aa13.7□□□□□ -0.22
CUX1-202ENST00000292538 CYP21A2P08686 494 aa13.7□□□□□ -0.22
CUX1-202ENST00000292538 SYT1P21579 422 aa13.7□□□□□ -0.22
CUX1-202ENST00000292538 MPHOSPH8Q99549 860 aa13.7□□□□□ -0.22
CUX1-202ENST00000292538 TRIM28Q13263 835 aaKnown RBP13.69□□□□□ -0.22
CUX1-202ENST00000292538 NEK1Q96PY6 1258 aa13.69□□□□□ -0.22
CUX1-202ENST00000292538 IQSEC3Q9UPP2 1182 aaPredicted RBP13.69□□□□□ -0.22
CUX1-202ENST00000292538 FIBPO43427 364 aa13.69□□□□□ -0.22
CUX1-202ENST00000292538 APPP05067 770 aa13.69□□□□□ -0.22
CUX1-202ENST00000292538 SPATA31A5Q5VU36 1347 aa13.69□□□□□ -0.22
CUX1-202ENST00000292538 SPATA31A7Q8IWB4 1347 aa13.69□□□□□ -0.22
CUX1-202ENST00000292538 N4BP2Q86UW6 1770 aaPredicted RBP13.69□□□□□ -0.22
CUX1-202ENST00000292538 EPB41L2O43491 1005 aaKnown RBP13.68□□□□□ -0.22
CUX1-202ENST00000292538 STX6O43752 255 aa13.68□□□□□ -0.22
CUX1-202ENST00000292538 PDE8AO60658 829 aa13.68□□□□□ -0.22
CUX1-202ENST00000292538 CIAO1O76071 339 aa13.68□□□□□ -0.22
CUX1-202ENST00000292538 GPT2Q8TD30 523 aa13.68□□□□□ -0.22
CUX1-202ENST00000292538 OSBP2Q969R2 916 aa13.68□□□□□ -0.22
CUX1-202ENST00000292538 DDX11Q96FC9 970 aa13.68□□□□□ -0.22
CUX1-202ENST00000292538 AFDNP55196 1824 aaKnown RBP13.68□□□□□ -0.22
CUX1-202ENST00000292538 M0R2C6 588 aa13.68□□□□□ -0.22
CUX1-202ENST00000292538 NPHP1O15259 732 aa13.68□□□□□ -0.22
CUX1-202ENST00000292538 RNF113AO15541 343 aaKnown RBP13.68□□□□□ -0.22
CUX1-202ENST00000292538 CSF1RP07333 972 aa13.68□□□□□ -0.22
CUX1-202ENST00000292538 RPS6KB1P23443 525 aa13.68□□□□□ -0.22
CUX1-202ENST00000292538 MEX3CQ5U5Q3 659 aaKnown RBP13.68□□□□□ -0.22
CUX1-202ENST00000292538 Q6ZUG5 572 aa13.68□□□□□ -0.22
CUX1-202ENST00000292538 STK11IPQ8N1F8 1099 aa13.68□□□□□ -0.22
CUX1-202ENST00000292538 UTP14AQ9BVJ6 771 aaKnown RBP13.68□□□□□ -0.22
CUX1-202ENST00000292538 CDCA7Q9BWT1 371 aaPredicted RBP13.68□□□□□ -0.22
CUX1-202ENST00000292538 GRPEL1Q9HAV7 217 aa13.68□□□□□ -0.22
CUX1-202ENST00000292538 WDR33Q9C0J8 1336 aaKnown RBP13.68□□□□□ -0.22
CUX1-202ENST00000292538 ARFGEF2Q9Y6D5 1785 aa13.68□□□□□ -0.22
CUX1-202ENST00000292538 GOLGB1Q14789 3259 aaKnown RBP13.68□□□□□ -0.22
CUX1-202ENST00000292538 KLHL40Q2TBA0 621 aa13.67□□□□□ -0.22
CUX1-202ENST00000292538 BRF1Q92994 677 aa13.67□□□□□ -0.22
CUX1-202ENST00000292538 CNPY2Q9Y2B0 182 aa13.67□□□□□ -0.22
CUX1-202ENST00000292538 PALLDQ8WX93 1383 aa13.67□□□□□ -0.22
CUX1-202ENST00000292538 DISP2A7MBM2 1401 aa13.67□□□□□ -0.22
CUX1-202ENST00000292538 MED23Q9ULK4 1368 aa13.67□□□□□ -0.22
CUX1-202ENST00000292538 PTMSP20962 102 aa13.67□□□□□ -0.22
CUX1-202ENST00000292538 EIF5P55010 431 aaKnown RBP13.67□□□□□ -0.22
CUX1-202ENST00000292538 LARP1BQ659C4 914 aaKnown RBP13.67□□□□□ -0.22
CUX1-202ENST00000292538 FAM173BQ6P4H8 233 aa13.67□□□□□ -0.22
CUX1-202ENST00000292538 RIPOR2Q9Y4F9 1068 aa13.67□□□□□ -0.22
CUX1-202ENST00000292538 U3KPZ7 1027 aaPredicted RBP13.67□□□□□ -0.22
CUX1-202ENST00000292538 SH3TC1Q8TE82 1336 aa13.67□□□□□ -0.22
CUX1-202ENST00000292538 GADD45BO75293 160 aaPredicted RBP13.67□□□□□ -0.22
CUX1-202ENST00000292538 HSPD1P10809 573 aaKnown RBP13.67□□□□□ -0.22
CUX1-202ENST00000292538 RAB11FIP4Q86YS3 637 aa13.67□□□□□ -0.22
CUX1-202ENST00000292538 THRAP3Q9Y2W1 955 aaKnown RBP13.67□□□□□ -0.22
CUX1-202ENST00000292538 PHKA1P46020 1223 aa13.66□□□□□ -0.22
CUX1-202ENST00000292538 CCT2P78371 535 aaKnown RBP13.66□□□□□ -0.22
CUX1-202ENST00000292538 NHSL1Q5SYE7 1610 aa13.66□□□□□ -0.22
CUX1-202ENST00000292538 GLI3P10071 1580 aa13.66□□□□□ -0.22
CUX1-202ENST00000292538 MAST3O60307 1309 aa13.66□□□□□ -0.22
CUX1-202ENST00000292538 MCAMP43121 646 aa13.66□□□□□ -0.22
CUX1-202ENST00000292538 SLC9C2Q5TAH2 1124 aa13.66□□□□□ -0.22
CUX1-202ENST00000292538 USP48Q86UV5 1035 aa13.66□□□□□ -0.22
CUX1-202ENST00000292538 TM6SF1Q9BZW5 370 aa13.66□□□□□ -0.22
CUX1-202ENST00000292538 PUS7LQ9H0K6 701 aaKnown RBP13.66□□□□□ -0.22
CUX1-202ENST00000292538 GPR108Q9NPR9 543 aa13.66□□□□□ -0.22
CUX1-202ENST00000292538 ABCA3Q99758 1704 aa13.65□□□□□ -0.22
CUX1-202ENST00000292538 SYCE3A1L190 88 aa13.65□□□□□ -0.22
CUX1-202ENST00000292538 PHF14O94880 888 aa13.65□□□□□ -0.22
CUX1-202ENST00000292538 ZSCAN22P10073 491 aaPredicted RBP13.65□□□□□ -0.22
CUX1-202ENST00000292538 TOB2Q14106 344 aaPredicted RBP13.65□□□□□ -0.22
CUX1-202ENST00000292538 ZSCAN23Q3MJ62 389 aa13.65□□□□□ -0.22
CUX1-202ENST00000292538 USP21Q9UK80 565 aa13.65□□□□□ -0.22
CUX1-202ENST00000292538 ERVV-1B6SEH8 477 aa13.65□□□□□ -0.22
CUX1-202ENST00000292538 JAK2O60674 1132 aa13.65□□□□□ -0.22
CUX1-202ENST00000292538 KDM4AO75164 1064 aa13.65□□□□□ -0.22
CUX1-202ENST00000292538 ST3GAL1Q11201 340 aa13.65□□□□□ -0.22
CUX1-202ENST00000292538 STOX1Q6ZVD7 989 aa13.65□□□□□ -0.22
CUX1-202ENST00000292538 ZNF34Q8IZ26 560 aa13.65□□□□□ -0.22
CUX1-202ENST00000292538 KLHL34Q8N239 644 aa13.65□□□□□ -0.22
CUX1-202ENST00000292538 ZSCAN31Q96LW9 406 aaPredicted RBP13.65□□□□□ -0.22
CUX1-202ENST00000292538 HMG20BQ9P0W2 317 aa13.65□□□□□ -0.22
CUX1-202ENST00000292538 EP400Q96L91 3159 aa13.64□□□□□ -0.23
CUX1-202ENST00000292538 TOGARAM1Q9Y4F4 1720 aa13.64□□□□□ -0.23
CUX1-202ENST00000292538 PDE8BO95263 885 aa13.64□□□□□ -0.23
CUX1-202ENST00000292538 ZMYM1Q5SVZ6 1142 aa13.64□□□□□ -0.23
CUX1-202ENST00000292538 SH2B1Q9NRF2 756 aaPredicted RBP13.64□□□□□ -0.23
CUX1-202ENST00000292538 MRE11P49959 708 aa13.64□□□□□ -0.23
CUX1-202ENST00000292538 DNM1Q05193 864 aaKnown RBP13.64□□□□□ -0.23
CUX1-202ENST00000292538 APOBRQ0VD83 1088 aa13.64□□□□□ -0.23
CUX1-202ENST00000292538 CCDC102BQ68D86 513 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms