RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 NUDT16Q96DE0 195 aaKnown RBP10.58□□□□□ -0.72
CUX1-201ENST00000292535 CFAP58Q5T655 872 aa10.58□□□□□ -0.72
CUX1-201ENST00000292535 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.58□□□□□ -0.72
CUX1-201ENST00000292535 RRAGBQ5VZM2 374 aa10.58□□□□□ -0.72
CUX1-201ENST00000292535 UBASH3AP57075 661 aa10.58□□□□□ -0.72
CUX1-201ENST00000292535 RTL9Q8NET4 1388 aa10.58□□□□□ -0.72
CUX1-201ENST00000292535 CTAGE15A4D2H0 777 aa10.58□□□□□ -0.72
CUX1-201ENST00000292535 CTAGE8P0CG41 777 aa10.58□□□□□ -0.72
CUX1-201ENST00000292535 CTAGE6Q86UF2 777 aa10.58□□□□□ -0.72
CUX1-201ENST00000292535 CTAGE4Q8IX94 777 aa10.58□□□□□ -0.72
CUX1-201ENST00000292535 CCDC144CPQ8IYA2 1237 aa10.58□□□□□ -0.72
CUX1-201ENST00000292535 CTAGE9A4FU28 777 aa10.58□□□□□ -0.72
CUX1-201ENST00000292535 ADAMTS2O95450 1211 aa10.58□□□□□ -0.72
CUX1-201ENST00000292535 RPL13P26373 211 aaKnown RBP10.58□□□□□ -0.72
CUX1-201ENST00000292535 GABPB2Q8TAK5 448 aaPredicted RBP10.58□□□□□ -0.72
CUX1-201ENST00000292535 RBM25P49756 843 aaKnown RBP10.58□□□□□ -0.72
CUX1-201ENST00000292535 GUCY1B3Q02153 619 aa10.58□□□□□ -0.72
CUX1-201ENST00000292535 BMS1Q14692 1282 aaKnown RBP10.57□□□□□ -0.72
CUX1-201ENST00000292535 CCDC121Q6ZUS5 278 aa10.57□□□□□ -0.72
CUX1-201ENST00000292535 CCT6BQ92526 530 aa10.57□□□□□ -0.72
CUX1-201ENST00000292535 NAP1L4Q99733 375 aaKnown RBP10.57□□□□□ -0.72
CUX1-201ENST00000292535 FAM184BQ9ULE4 1060 aa10.57□□□□□ -0.72
CUX1-201ENST00000292535 ADCY5O95622 1261 aa10.57□□□□□ -0.72
CUX1-201ENST00000292535 CALM1P0DP23 149 aa10.57□□□□□ -0.72
CUX1-201ENST00000292535 CALM2P0DP24 149 aa10.57□□□□□ -0.72
CUX1-201ENST00000292535 CALM3P0DP25 149 aa10.57□□□□□ -0.72
CUX1-201ENST00000292535 CCDC63Q8NA47 563 aa10.57□□□□□ -0.72
CUX1-201ENST00000292535 RRP36Q96EU6 259 aaKnown RBP10.57□□□□□ -0.72
CUX1-201ENST00000292535 CCDC129Q6ZRS4 1044 aa10.57□□□□□ -0.72
CUX1-201ENST00000292535 HS2ST1Q7LGA3 356 aa10.57□□□□□ -0.72
CUX1-201ENST00000292535 CSRNP2Q9H175 543 aa10.57□□□□□ -0.72
CUX1-201ENST00000292535 SERPINA10Q9UK55 444 aa10.57□□□□□ -0.72
CUX1-201ENST00000292535 GJB2P29033 226 aa10.57□□□□□ -0.72
CUX1-201ENST00000292535 SLC8A3P57103 927 aa10.57□□□□□ -0.72
CUX1-201ENST00000292535 TROQ12816 1431 aaPredicted RBP10.57□□□□□ -0.72
CUX1-201ENST00000292535 ZNF710Q8N1W2 664 aa10.57□□□□□ -0.72
CUX1-201ENST00000292535 KIF14Q15058 1648 aa10.57□□□□□ -0.72
CUX1-201ENST00000292535 CRCPO75575 148 aa10.57□□□□□ -0.72
CUX1-201ENST00000292535 CIB2O75838 187 aa10.57□□□□□ -0.72
CUX1-201ENST00000292535 KRT83P78385 493 aa10.57□□□□□ -0.72
CUX1-201ENST00000292535 HAUS2Q9NVX0 235 aa10.57□□□□□ -0.72
CUX1-201ENST00000292535 NOC2LQ9Y3T9 749 aaKnown RBP10.57□□□□□ -0.72
CUX1-201ENST00000292535 SNRPA1P09661 255 aaKnown RBP10.56□□□□□ -0.72
CUX1-201ENST00000292535 NAA16Q6N069 864 aaPredicted RBP10.56□□□□□ -0.72
CUX1-201ENST00000292535 CCDC8Q9H0W5 538 aaPredicted RBP10.56□□□□□ -0.72
CUX1-201ENST00000292535 SMARCA5O60264 1052 aaPredicted RBP10.56□□□□□ -0.72
CUX1-201ENST00000292535 STK10O94804 968 aaKnown RBP10.56□□□□□ -0.72
CUX1-201ENST00000292535 UQCRFS1P1P0C7P4 283 aa10.56□□□□□ -0.72
CUX1-201ENST00000292535 SLFN5Q08AF3 891 aa10.56□□□□□ -0.72
CUX1-201ENST00000292535 BMP2KLQ5H9B9 411 aa10.56□□□□□ -0.72
CUX1-201ENST00000292535 KCNG4Q8TDN1 519 aa10.56□□□□□ -0.72
CUX1-201ENST00000292535 MTRF1LQ9UGC7 380 aaKnown RBP10.56□□□□□ -0.72
CUX1-201ENST00000292535 STX8Q9UNK0 236 aa10.56□□□□□ -0.72
CUX1-201ENST00000292535 PRPF31Q8WWY3 499 aaKnown RBP10.56□□□□□ -0.72
CUX1-201ENST00000292535 GNA11P29992 359 aa10.56□□□□□ -0.72
CUX1-201ENST00000292535 ZBTB43O43298 467 aa10.56□□□□□ -0.72
CUX1-201ENST00000292535 CFAP157Q5JU67 520 aa10.56□□□□□ -0.72
CUX1-201ENST00000292535 ZNF622Q969S3 477 aaKnown RBP eCLIP10.56□□□□□ -0.721e-7■■□□□ 13.1
CUX1-201ENST00000292535 PAIP2Q9BPZ3 127 aaKnown RBP10.56□□□□□ -0.72
CUX1-201ENST00000292535 MNAT1P51948 309 aa10.56□□□□□ -0.72
CUX1-201ENST00000292535 NAPAP54920 295 aa10.56□□□□□ -0.72
CUX1-201ENST00000292535 BIN1O00499 593 aa10.55□□□□□ -0.72
CUX1-201ENST00000292535 PLCD3Q8N3E9 789 aa10.55□□□□□ -0.72
CUX1-201ENST00000292535 HAUS7Q99871 368 aa10.55□□□□□ -0.72
CUX1-201ENST00000292535 EPB41P11171 864 aaKnown RBP10.55□□□□□ -0.72
CUX1-201ENST00000292535 SEL1L2Q5TEA6 688 aa10.55□□□□□ -0.72
CUX1-201ENST00000292535 FLIIQ13045 1269 aa10.55□□□□□ -0.72
CUX1-201ENST00000292535 CCDC50Q8IVM0 306 aa10.55□□□□□ -0.72
CUX1-201ENST00000292535 CACYBPQ9HB71 228 aaKnown RBP10.55□□□□□ -0.72
CUX1-201ENST00000292535 SAMD15Q9P1V8 674 aa10.55□□□□□ -0.72
CUX1-201ENST00000292535 FAM169AQ9Y6X4 670 aa10.55□□□□□ -0.72
CUX1-201ENST00000292535 MRC2Q9UBG0 1479 aa10.55□□□□□ -0.72
CUX1-201ENST00000292535 LDHAL6AQ6ZMR3 332 aa10.55□□□□□ -0.72
CUX1-201ENST00000292535 RPUSD2Q8IZ73 545 aaKnown RBP10.55□□□□□ -0.72
CUX1-201ENST00000292535 PFDN4Q9NQP4 134 aa10.55□□□□□ -0.72
CUX1-201ENST00000292535 TUBBP07437 444 aa10.55□□□□□ -0.72
CUX1-201ENST00000292535 GTF2F1P35269 517 aaKnown RBP eCLIP10.55□□□□□ -0.722e-8■■■□□ 18.7
CUX1-201ENST00000292535 SPDYE3A6NKU9 549 aa10.54□□□□□ -0.72
CUX1-201ENST00000292535 TNPO1Q92973 898 aaKnown RBP10.54□□□□□ -0.72
CUX1-201ENST00000292535 KRT222Q8N1A0 295 aa10.54□□□□□ -0.72
CUX1-201ENST00000292535 VIMP08670 466 aaKnown RBP10.54□□□□□ -0.72
CUX1-201ENST00000292535 POLD1P28340 1107 aa10.54□□□□□ -0.72
CUX1-201ENST00000292535 LMOD1P29536 600 aaPredicted RBP10.54□□□□□ -0.72
CUX1-201ENST00000292535 RUSC2Q8N2Y8 1516 aa10.54□□□□□ -0.72
CUX1-201ENST00000292535 E7EVH7 732 aa10.54□□□□□ -0.72
CUX1-201ENST00000292535 TTC22Q5TAA0 569 aa10.54□□□□□ -0.72
CUX1-201ENST00000292535 ARFGAP3Q9NP61 516 aa10.54□□□□□ -0.72
CUX1-201ENST00000292535 CCDC160A6NGH7 325 aa10.54□□□□□ -0.72
CUX1-201ENST00000292535 DYNC1I1O14576 645 aa10.54□□□□□ -0.72
CUX1-201ENST00000292535 WDR44Q5JSH3 913 aa10.54□□□□□ -0.72
CUX1-201ENST00000292535 KRT79Q5XKE5 535 aa10.54□□□□□ -0.72
CUX1-201ENST00000292535 AFAP1L2Q8N4X5 818 aa10.54□□□□□ -0.72
CUX1-201ENST00000292535 NEK11Q8NG66 645 aa10.54□□□□□ -0.72
CUX1-201ENST00000292535 KIFAP3Q92845 792 aa10.54□□□□□ -0.72
CUX1-201ENST00000292535 NYXQ9GZU5 481 aa10.54□□□□□ -0.72
CUX1-201ENST00000292535 MMRN2Q9H8L6 949 aa10.54□□□□□ -0.72
CUX1-201ENST00000292535 NAIPQ13075 1403 aa10.54□□□□□ -0.72
CUX1-201ENST00000292535 TBC1D31Q96DN5 1066 aa10.53□□□□□ -0.72
CUX1-201ENST00000292535 IFNL2Q8IZJ0 200 aa10.53□□□□□ -0.72
CUX1-201ENST00000292535 CCDC42Q96M95 316 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms