RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 RLBP1P12271 317 aa13.12□□□□□ -0.31
USP53-201ENST00000274030 DNAI2Q9GZS0 605 aa13.12□□□□□ -0.31
USP53-201ENST00000274030 ABCA10Q8WWZ4 1543 aa13.12□□□□□ -0.31
USP53-201ENST00000274030 PPP4R3BQ5MIZ7 849 aa13.11□□□□□ -0.31
USP53-201ENST00000274030 CTR9Q6PD62 1173 aa13.11□□□□□ -0.31
USP53-201ENST00000274030 LRSAM1Q6UWE0 723 aa13.11□□□□□ -0.31
USP53-201ENST00000274030 CCDC186Q7Z3E2 898 aa13.11□□□□□ -0.31
USP53-201ENST00000274030 SPAG5Q96R06 1193 aa13.11□□□□□ -0.31
USP53-201ENST00000274030 MCM3P25205 808 aa13.11□□□□□ -0.31
USP53-201ENST00000274030 AOPEPQ8N6M6 819 aa13.11□□□□□ -0.31
USP53-201ENST00000274030 RGS22Q8NE09 1264 aa13.11□□□□□ -0.31
USP53-201ENST00000274030 DHX58Q96C10 678 aa13.11□□□□□ -0.31
USP53-201ENST00000274030 PAG1Q9NWQ8 432 aa13.11□□□□□ -0.31
USP53-201ENST00000274030 POLKQ9UBT6 870 aa13.11□□□□□ -0.31
USP53-201ENST00000274030 CCDC174Q6PII3 467 aa13.11□□□□□ -0.31
USP53-201ENST00000274030 DHX29Q7Z478 1369 aaKnown RBP13.11□□□□□ -0.31
USP53-201ENST00000274030 ZFYP08048 801 aaPredicted RBP13.11□□□□□ -0.31
USP53-201ENST00000274030 ARID5AQ03989 594 aa13.11□□□□□ -0.31
USP53-201ENST00000274030 NAA15Q9BXJ9 866 aaKnown RBP13.11□□□□□ -0.31
USP53-201ENST00000274030 DENND4BO75064 1496 aaPredicted RBP13.11□□□□□ -0.31
USP53-201ENST00000274030 IL15P40933 162 aaPredicted RBP13.11□□□□□ -0.31
USP53-201ENST00000274030 GRM1Q13255 1194 aa13.11□□□□□ -0.31
USP53-201ENST00000274030 STXBP4Q6ZWJ1 553 aa13.11□□□□□ -0.31
USP53-201ENST00000274030 GCOM1H8Y6P7 765 aaPredicted RBP13.1□□□□□ -0.31
USP53-201ENST00000274030 MYZAPP0CAP1 466 aa13.1□□□□□ -0.31
USP53-201ENST00000274030 NAPAP54920 295 aa13.1□□□□□ -0.31
USP53-201ENST00000274030 GSTO1P78417 241 aa13.1□□□□□ -0.31
USP53-201ENST00000274030 APOBRQ0VD83 1088 aa13.1□□□□□ -0.31
USP53-201ENST00000274030 MRPS27Q92552 414 aaKnown RBP13.1□□□□□ -0.31
USP53-201ENST00000274030 SIRT1Q96EB6 747 aa13.1□□□□□ -0.31
USP53-201ENST00000274030 C8orf37Q96NL8 207 aa13.1□□□□□ -0.31
USP53-201ENST00000274030 TMEM87AQ8NBN3 555 aa13.1□□□□□ -0.31
USP53-201ENST00000274030 PPIP5K1Q6PFW1 1433 aa13.1□□□□□ -0.31
USP53-201ENST00000274030 SKILP12757 684 aa13.1□□□□□ -0.31
USP53-201ENST00000274030 LMOD1P29536 600 aaPredicted RBP13.1□□□□□ -0.31
USP53-201ENST00000274030 AKAP4Q5JQC9 854 aa13.1□□□□□ -0.31
USP53-201ENST00000274030 NCKAP5LQ9HCH0 1330 aa13.1□□□□□ -0.31
USP53-201ENST00000274030 ASIC1P78348 528 aa13.1□□□□□ -0.31
USP53-201ENST00000274030 PHACTR3Q96KR7 559 aa13.1□□□□□ -0.31
USP53-201ENST00000274030 COMMD10Q9Y6G5 202 aa13.1□□□□□ -0.31
USP53-201ENST00000274030 SMC1AQ14683 1233 aaKnown RBP13.09□□□□□ -0.31
USP53-201ENST00000274030 KCNG4Q8TDN1 519 aa13.09□□□□□ -0.31
USP53-201ENST00000274030 TAOK3Q9H2K8 898 aa13.09□□□□□ -0.31
USP53-201ENST00000274030 DZIP3Q86Y13 1208 aaKnown RBP13.09□□□□□ -0.31
USP53-201ENST00000274030 DNAI1Q9UI46 699 aa13.09□□□□□ -0.31
USP53-201ENST00000274030 NSFL1CQ9UNZ2 370 aaKnown RBP13.09□□□□□ -0.31
USP53-201ENST00000274030 STX17P56962 302 aa13.09□□□□□ -0.31
USP53-201ENST00000274030 PLIN2Q99541 437 aa13.09□□□□□ -0.31
USP53-201ENST00000274030 TTC21AQ8NDW8 1320 aa13.09□□□□□ -0.31
USP53-201ENST00000274030 ALDH1L1O75891 902 aa13.09□□□□□ -0.31
USP53-201ENST00000274030 TFCP2Q12800 502 aa13.09□□□□□ -0.31
USP53-201ENST00000274030 RBM26Q5T8P6 1007 aaKnown RBP13.09□□□□□ -0.31
USP53-201ENST00000274030 GRIN2AQ12879 1464 aa13.09□□□□□ -0.31
USP53-201ENST00000274030 F13A1P00488 732 aa13.09□□□□□ -0.31
USP53-201ENST00000274030 CALM1P0DP23 149 aa13.09□□□□□ -0.31
USP53-201ENST00000274030 CALM2P0DP24 149 aa13.09□□□□□ -0.31
USP53-201ENST00000274030 CALM3P0DP25 149 aa13.09□□□□□ -0.31
USP53-201ENST00000274030 ZGPATQ8N5A5 531 aaKnown RBP13.09□□□□□ -0.31
USP53-201ENST00000274030 LMAN1P49257 510 aa13.08□□□□□ -0.31
USP53-201ENST00000274030 MAGEB6Q8N7X4 407 aa13.08□□□□□ -0.31
USP53-201ENST00000274030 CNNM2Q9H8M5 875 aa13.08□□□□□ -0.31
USP53-201ENST00000274030 TNRQ92752 1358 aa13.08□□□□□ -0.32
USP53-201ENST00000274030 MAGEB6P1A0A0J9YX57 407 aa13.08□□□□□ -0.32
USP53-201ENST00000274030 CCDC175P0C221 793 aa13.08□□□□□ -0.32
USP53-201ENST00000274030 CPA1P15085 419 aa13.08□□□□□ -0.32
USP53-201ENST00000274030 AK2P54819 239 aa13.08□□□□□ -0.32
USP53-201ENST00000274030 PYM1Q9BRP8 204 aaKnown RBP13.08□□□□□ -0.32
USP53-201ENST00000274030 TTC12Q9H892 705 aaPredicted RBP13.08□□□□□ -0.32
USP53-201ENST00000274030 VEZTQ9HBM0 779 aa13.08□□□□□ -0.32
USP53-201ENST00000274030 INCENPQ9NQS7 918 aa13.08□□□□□ -0.32
USP53-201ENST00000274030 MCM9Q9NXL9 1143 aa13.08□□□□□ -0.32
USP53-201ENST00000274030 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.08□□□□□ -0.32
USP53-201ENST00000274030 V9GYY5 206 aaPredicted RBP13.08□□□□□ -0.32
USP53-201ENST00000274030 RIMBP2O15034 1052 aa13.08□□□□□ -0.32
USP53-201ENST00000274030 DDB1Q16531 1140 aa13.08□□□□□ -0.32
USP53-201ENST00000274030 TMTC2Q8N394 836 aa13.08□□□□□ -0.32
USP53-201ENST00000274030 ZKSCAN3Q9BRR0 538 aa13.08□□□□□ -0.32
USP53-201ENST00000274030 UTP14AQ9BVJ6 771 aaKnown RBP13.08□□□□□ -0.32
USP53-201ENST00000274030 RMND1Q9NWS8 449 aa13.08□□□□□ -0.32
USP53-201ENST00000274030 HMGXB3Q12766 1538 aa13.08□□□□□ -0.32
USP53-201ENST00000274030 TERF1P54274 439 aa13.07□□□□□ -0.32
USP53-201ENST00000274030 UVSSAQ2YD98 709 aa13.07□□□□□ -0.32
USP53-201ENST00000274030 CEP85Q6P2H3 762 aa13.07□□□□□ -0.32
USP53-201ENST00000274030 ERMNQ8TAM6 284 aa13.07□□□□□ -0.32
USP53-201ENST00000274030 ATP2C2O75185 946 aa13.07□□□□□ -0.32
USP53-201ENST00000274030 AKNAD1Q5T1N1 836 aa13.07□□□□□ -0.32
USP53-201ENST00000274030 VAMP4O75379 141 aa13.07□□□□□ -0.32
USP53-201ENST00000274030 GJC1P36383 396 aa13.07□□□□□ -0.32
USP53-201ENST00000274030 OGFOD1Q8N543 542 aa13.07□□□□□ -0.32
USP53-201ENST00000274030 LINS1Q8NG48 757 aa13.07□□□□□ -0.32
USP53-201ENST00000274030 SYNCQ9H7C4 482 aa13.07□□□□□ -0.32
USP53-201ENST00000274030 HOMER2Q9NSB8 354 aa13.07□□□□□ -0.32
USP53-201ENST00000274030 FSD2A1L4K1 749 aa13.07□□□□□ -0.32
USP53-201ENST00000274030 IRS4O14654 1257 aaPredicted RBP13.07□□□□□ -0.32
USP53-201ENST00000274030 TNNI2P48788 182 aa13.07□□□□□ -0.32
USP53-201ENST00000274030 KIAA0753Q2KHM9 967 aa13.07□□□□□ -0.32
USP53-201ENST00000274030 GOLGA6L9A6NEM1 432 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 SPTLC2O15270 562 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 PHACTR2O75167 634 aa13.06□□□□□ -0.32
USP53-201ENST00000274030 SMARCC2Q8TAQ2 1214 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms