RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, human

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VIM-210	ENST00000637053	TAL2	Q16559	108 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	MS4A18	Q3C1V0	323 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	SNAI3	Q3KNW1	292 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	CEACAM21	Q3KPI0	293 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	RNF212	Q495C1	297 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	ASPRV1	Q53RT3	343 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	ESCO2	Q56NI9	601 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	SYT14P1	Q58G82	188 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	PPM1L	Q5SGD2	360 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	FAM102A	Q5T9C2	384 aa	Predicted RBP	2.64	□□□□□ -1.99
VIM-210	ENST00000637053	UBE2U	Q5VVX9	321 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	LEMD1	Q68G75	181 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	DMKN	Q6E0U4	476 aa	Predicted RBP	2.64	□□□□□ -1.99
VIM-210	ENST00000637053	SFRP4	Q6FHJ7	346 aa	Predicted RBP	2.64	□□□□□ -1.99
VIM-210	ENST00000637053	RTL6	Q6ICC9	239 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	MED27	Q6P2C8	311 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053		Q6ZSR9	355 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	ZNF534	Q76KX8	674 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	SLC29A4	Q7RTT9	530 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	OLIG3	Q7RTU3	272 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	ZNF367	Q7RTV3	350 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	ANKRD37	Q7Z713	158 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	ZNF589	Q86UQ0	364 aa	Predicted RBP	2.64	□□□□□ -1.99
VIM-210	ENST00000637053	NIT1	Q86X76	327 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	ZNF444	Q8N0Y2	327 aa	Predicted RBP	2.64	□□□□□ -1.99
VIM-210	ENST00000637053	EIF4E3	Q8N5X7	224 aa	Known RBP	2.64	□□□□□ -1.99
VIM-210	ENST00000637053	WDSUB1	Q8N9V3	476 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	ADAD2	Q8NCV1	583 aa	Known RBP	2.64	□□□□□ -1.99
VIM-210	ENST00000637053	MDS2	Q8NDY4	140 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	ZNF548	Q8NEK5	533 aa	Predicted RBP	2.64	□□□□□ -1.99
VIM-210	ENST00000637053	VN1R2	Q8NFZ6	395 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	SLC26A10	Q8NG04	563 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	OR5M3	Q8NGP4	307 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	OR51F2	Q8NH61	342 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	OR10A6	Q8NH74	314 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	SYNPR	Q8TBG9	265 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	PYROXD1	Q8WU10	500 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	RNF138	Q8WVD3	245 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	ASB17	Q8WXJ9	295 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	OR8D1	Q8WZ84	308 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	RAB8B	Q92930	207 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	BAD	Q92934	168 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	SNAPC3	Q92966	411 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	STMN2	Q93045	179 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	NEIL2	Q969S2	332 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	TMEM203	Q969S6	136 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	SMIM19	Q96E16	107 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	ZHX1-C8orf76	Q96EF9	292 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	CPNE2	Q96FN4	548 aa	Predicted RBP	2.64	□□□□□ -1.99
VIM-210	ENST00000637053	TXNDC15	Q96J42	360 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	OR10C1	Q96KK4	312 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	KCTD7	Q96MP8	289 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	ALKBH3	Q96Q83	286 aa	Predicted RBP	2.64	□□□□□ -1.99
VIM-210	ENST00000637053	OR5M11	Q96RB7	305 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	HBEGF	Q99075	208 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	S1PR3	Q99500	378 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	VAT1	Q99536	393 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	ATP5S	Q99766	215 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	AGPAT1	Q99943	283 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	WDR77	Q9BQA1	342 aa	Predicted RBP	2.64	□□□□□ -1.99
VIM-210	ENST00000637053	EBF4	Q9BQW3	602 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	FAM49A	Q9H0Q0	323 aa	Predicted RBP	2.64	□□□□□ -1.99
VIM-210	ENST00000637053	PPA2	Q9H2U2	334 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	MIXL1	Q9H2W2	232 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	C5orf66	Q9H5L9	145 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	RDH14	Q9HBH5	336 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	POLD4	Q9HCU8	107 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	RETN	Q9HD89	108 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	HINT3	Q9NQE9	182 aa	Known RBP	2.64	□□□□□ -1.99
VIM-210	ENST00000637053	BIN3	Q9NQY0	253 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	AGPAT4	Q9NRZ5	378 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	DUS2	Q9NX74	493 aa	Known RBP	2.64	□□□□□ -1.99
VIM-210	ENST00000637053	GLTP	Q9NZD2	209 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	TCF19	Q9Y242	345 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	NSG2	Q9Y328	171 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	SNX24	Q9Y343	169 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	HSPB11	Q9Y547	144 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	FAM135B	Q49AJ0	1406 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	POGZ	Q7Z3K3	1410 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	KIAA1107	Q9UPP5	1409 aa		2.64	□□□□□ -1.99
VIM-210	ENST00000637053	PCF11	O94913	1555 aa	Known RBP	2.64	□□□□□ -1.99
VIM-210	ENST00000637053	KIF15	Q9NS87	1388 aa		2.63	□□□□□ -1.99
VIM-210	ENST00000637053	CEP152	O94986	1710 aa		2.63	□□□□□ -1.99
VIM-210	ENST00000637053	PTPRU	Q92729	1446 aa		2.63	□□□□□ -1.99
VIM-210	ENST00000637053	SCAPER	Q9BY12	1400 aa		2.63	□□□□□ -1.99
VIM-210	ENST00000637053	TRAV8-7	A0A075B6U6	113 aa		2.63	□□□□□ -1.99
VIM-210	ENST00000637053	GLYATL1P3	A0A0U1RQE8	302 aa		2.63	□□□□□ -1.99
VIM-210	ENST00000637053	PRSS51	A0A1B0GVH4	220 aa		2.63	□□□□□ -1.99
VIM-210	ENST00000637053	ATP6AP2	A0A1C7CYW4	349 aa		2.63	□□□□□ -1.99
VIM-210	ENST00000637053	SLC22A23	A1A5C7	686 aa		2.63	□□□□□ -1.99
VIM-210	ENST00000637053	CCDC182	A6NF36	153 aa		2.63	□□□□□ -1.99
VIM-210	ENST00000637053	YJEFN3	A6XGL0	299 aa		2.63	□□□□□ -1.99
VIM-210	ENST00000637053	C17orf105	B2RV13	164 aa		2.63	□□□□□ -1.99
VIM-210	ENST00000637053		B4DGG1	531 aa		2.63	□□□□□ -1.99
VIM-210	ENST00000637053	PPP5D1	E7EU14	171 aa		2.63	□□□□□ -1.99
VIM-210	ENST00000637053		H3BMH7	237 aa		2.63	□□□□□ -1.99
VIM-210	ENST00000637053	ENSA	O43768	121 aa	Known RBP	2.63	□□□□□ -1.99
VIM-210	ENST00000637053	EFNA2	O43921	213 aa		2.63	□□□□□ -1.99
VIM-210	ENST00000637053	SNX3	O60493	162 aa		2.63	□□□□□ -1.99
VIM-210	ENST00000637053	EIF4E2	O60573	245 aa	Known RBP	2.63	□□□□□ -1.99

Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms