RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 KLBQ86Z14 1044 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 GHDCQ8N2G8 530 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 ZNF511Q8NB15 262 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 NDNFQ8TB73 568 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 ZNRF4Q8WWF5 429 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 RPL3LQ92901 407 aaKnown RBP9.41□□□□□ -0.9
CLN3-248ENST00000636355 ABTB1Q969K4 478 aaPredicted RBP9.41□□□□□ -0.9
CLN3-248ENST00000636355 TMEM54Q969K7 222 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 DNAJA3Q96EY1 480 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 KCTD7Q96MP8 289 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 OR2M2Q96R28 347 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 TBX5Q99593 518 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 CHCHD6Q9BRQ6 235 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 DCUN1D5Q9BTE7 237 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 OR51E2Q9H255 320 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 SRA1Q9HD15 236 aaKnown RBP9.41□□□□□ -0.9
CLN3-248ENST00000636355 B3GAT2Q9NPZ5 323 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 ST6GALNAC2Q9UJ37 374 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 FOXD3Q9UJU5 478 aaPredicted RBP9.41□□□□□ -0.9
CLN3-248ENST00000636355 COPS3Q9UNS2 423 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 ZNF175Q9Y473 711 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 FLVCR1Q9Y5Y0 555 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 KMT2BQ9UMN6 2715 aaPredicted RBP9.41□□□□□ -0.9
CLN3-248ENST00000636355 ZNF407Q9C0G0 2248 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 ZFHX4Q86UP3 3567 aa9.41□□□□□ -0.9
CLN3-248ENST00000636355 SPTBN2O15020 2390 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 LOC100506127A0A0U1RQW1 187 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 A0A1B0GVC2 190 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 METTL15A6NJ78 407 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 FAM166BA8MTA8 275 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 ZNF724A8MTY0 619 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 TFECO14948 347 aaPredicted RBP9.4□□□□□ -0.9
CLN3-248ENST00000636355 CXCL13O43927 109 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 SLC43A1O75387 559 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 GPX5O75715 221 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 SC5DO75845 299 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 GATBO75879 557 aaKnown RBP9.4□□□□□ -0.9
CLN3-248ENST00000636355 SYNGR4O95473 234 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 LALBAP00709 142 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 ZNF823P16415 610 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 CFL1P23528 166 aaKnown RBP9.4□□□□□ -0.9
CLN3-248ENST00000636355 LAP3P28838 519 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 DCTDP32321 178 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 CD79BP40259 229 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 EIF1AXP47813 144 aaKnown RBP9.4□□□□□ -0.9
CLN3-248ENST00000636355 CLDN17P56750 224 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 OR12D2P58182 307 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 RASGEF1BQ0VAM2 473 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 ZNF169Q14929 603 aaPredicted RBP9.4□□□□□ -0.9
CLN3-248ENST00000636355 NRN1LQ496H8 165 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 RPUSD3Q6P087 351 aaKnown RBP9.4□□□□□ -0.9
CLN3-248ENST00000636355 SLC25A47Q6Q0C1 308 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 SSX6Q7RTT6 188 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 DPY19L4Q7Z388 723 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.4□□□□□ -0.9
CLN3-248ENST00000636355 ZNF679Q8IYX0 411 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 KDM8Q8N371 416 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 SYT14Q8NB59 555 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 OR10H5Q8NGA6 315 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 OR52N5Q8NH56 324 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 TXNDC15Q96J42 360 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 PGLYRP3Q96LB9 341 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 OR8B4Q96RC9 309 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 UCN2Q96RP3 112 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 WACQ9BTA9 647 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 CENPOQ9BU64 300 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 SLC6A15Q9H2J7 730 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 NIPAL2Q9H841 368 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 ISG20L2Q9H9L3 353 aaKnown RBP9.4□□□□□ -0.9
CLN3-248ENST00000636355 BCO1Q9HAY6 547 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 ACOXLQ9NUZ1 547 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 MRPL22Q9NWU5 206 aaKnown RBP9.4□□□□□ -0.9
CLN3-248ENST00000636355 TXNL4BQ9NX01 149 aaKnown RBP9.4□□□□□ -0.9
CLN3-248ENST00000636355 GLTPQ9NZD2 209 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 GNG8Q9UK08 70 aa9.4□□□□□ -0.9
CLN3-248ENST00000636355 TRGV5A0A0B4J1U4 118 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 TMEM212A6NML5 194 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 MKRN2OSH3BPM6 223 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 J3QLW9 94 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 ZNF593O00488 134 aaPredicted RBP9.39□□□□□ -0.91
CLN3-248ENST00000636355 AQP7O14520 342 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 RRP8O43159 456 aaKnown RBP9.39□□□□□ -0.91
CLN3-248ENST00000636355 RAMP1O60894 148 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 TMEM127O75204 238 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 CELA3AP09093 270 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 SPARCP09486 303 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 ZNF19P17023 458 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 MAPK3P27361 379 aaPredicted RBP9.39□□□□□ -0.91
CLN3-248ENST00000636355 GUCA1AP43080 201 aaPredicted RBP9.39□□□□□ -0.91
CLN3-248ENST00000636355 ZNF84P51523 738 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 CCR9P51686 369 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 CLDN15P56746 228 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 LSM6P62312 80 aaKnown RBP9.39□□□□□ -0.91
CLN3-248ENST00000636355 RPS25P62851 125 aaKnown RBP9.39□□□□□ -0.91
CLN3-248ENST00000636355 FMODQ06828 376 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 YIF1BQ5BJH7 314 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 LYPD4Q6UWN0 246 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 Q6ZS92 163 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 SPACA3Q8IXA5 215 aa9.39□□□□□ -0.91
CLN3-248ENST00000636355 C20orf196Q8IYI0 205 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms