RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 AMIGO2Q86SJ2 522 aa15.54■□□□□ 0.08
CLN3-247ENST00000636351 ADCK1Q86TW2 530 aa15.54■□□□□ 0.08
CLN3-247ENST00000636351 JAZF1Q86VZ6 243 aa15.54■□□□□ 0.08
CLN3-247ENST00000636351 FNDC8Q8TC99 324 aa15.54■□□□□ 0.08
CLN3-247ENST00000636351 LRTOMTQ8WZ04 291 aa15.54■□□□□ 0.08
CLN3-247ENST00000636351 DUS3LQ96G46 650 aaKnown RBP15.54■□□□□ 0.08
CLN3-247ENST00000636351 NIPSNAP1Q9BPW8 284 aa15.54■□□□□ 0.08
CLN3-247ENST00000636351 NELFAQ9H3P2 528 aa15.54■□□□□ 0.08
CLN3-247ENST00000636351 NPAP1Q9NZP6 1156 aa15.54■□□□□ 0.08
CLN3-247ENST00000636351 PRSS37A4D1T9 235 aa15.53■□□□□ 0.08
CLN3-247ENST00000636351 FARS2O95363 451 aaKnown RBP15.53■□□□□ 0.08
CLN3-247ENST00000636351 CD79AP11912 226 aa15.53■□□□□ 0.08
CLN3-247ENST00000636351 ZNF23P17027 643 aa15.53■□□□□ 0.08
CLN3-247ENST00000636351 HIST3H3Q16695 136 aa15.53■□□□□ 0.08
CLN3-247ENST00000636351 THEM4Q5T1C6 240 aa15.53■□□□□ 0.08
CLN3-247ENST00000636351 ZFP1Q6P2D0 407 aa15.53■□□□□ 0.08
CLN3-247ENST00000636351 TMEM108Q6UXF1 575 aa15.53■□□□□ 0.08
CLN3-247ENST00000636351 C10orf67Q8IYJ2 551 aa15.53■□□□□ 0.08
CLN3-247ENST00000636351 OR5K1Q8NHB7 308 aa15.53■□□□□ 0.08
CLN3-247ENST00000636351 TEX47Q8TBZ9 253 aa15.53■□□□□ 0.08
CLN3-247ENST00000636351 NANOS1Q8WY41 292 aaKnown RBP15.53■□□□□ 0.08
CLN3-247ENST00000636351 CXorf56Q9H5V9 222 aa15.53■□□□□ 0.08
CLN3-247ENST00000636351 RERGLQ9H628 205 aa15.53■□□□□ 0.08
CLN3-247ENST00000636351 DENND2DQ9H6A0 471 aaPredicted RBP15.53■□□□□ 0.08
CLN3-247ENST00000636351 SMURF2Q9HAU4 748 aa15.53■□□□□ 0.08
CLN3-247ENST00000636351 TMEM38BQ9NVV0 291 aa15.53■□□□□ 0.08
CLN3-247ENST00000636351 ARPC4-TTLL3A0A0A6YYG9 625 aa15.52■□□□□ 0.08
CLN3-247ENST00000636351 A0A1W2PPL8 197 aa15.52■□□□□ 0.08
CLN3-247ENST00000636351 H3BN98 237 aa15.52■□□□□ 0.08
CLN3-247ENST00000636351 CD3EP07766 207 aa15.52■□□□□ 0.08
CLN3-247ENST00000636351 APEHP13798 732 aaKnown RBP15.52■□□□□ 0.08
CLN3-247ENST00000636351 ANXA8P13928 327 aa15.52■□□□□ 0.08
CLN3-247ENST00000636351 HOXB1P14653 301 aaPredicted RBP15.52■□□□□ 0.08
CLN3-247ENST00000636351 PAX1P15863 534 aa15.52■□□□□ 0.08
CLN3-247ENST00000636351 PRKACGP22612 351 aa15.52■□□□□ 0.08
CLN3-247ENST00000636351 ATP5J2P56134 94 aa15.52■□□□□ 0.08
CLN3-247ENST00000636351 BSPH1Q075Z2 132 aa15.52■□□□□ 0.08
CLN3-247ENST00000636351 C10orf128Q5T292 105 aa15.52■□□□□ 0.08
CLN3-247ENST00000636351 SEZ6L2Q6UXD5 910 aa15.52■□□□□ 0.08
CLN3-247ENST00000636351 OR8D4Q8NGM9 314 aa15.52■□□□□ 0.08
CLN3-247ENST00000636351 HTRA1Q92743 480 aa15.52■□□□□ 0.08
CLN3-247ENST00000636351 BOD1Q96IK1 185 aa15.52■□□□□ 0.08
CLN3-247ENST00000636351 TSSK6Q9BXA6 273 aa15.52■□□□□ 0.08
CLN3-247ENST00000636351 PLA2G12AQ9BZM1 189 aa15.52■□□□□ 0.08
CLN3-247ENST00000636351 ZNF701Q9NV72 531 aaPredicted RBP15.52■□□□□ 0.08
CLN3-247ENST00000636351 RNF115Q9Y4L5 304 aa15.52■□□□□ 0.08
CLN3-247ENST00000636351 CSPG4Q6UVK1 2322 aa15.52■□□□□ 0.07
CLN3-247ENST00000636351 DSCAMO60469 2012 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 IGKV1D-43A0A0B4J1Z2 117 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 SLC22A23A1A5C7 686 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 IMPA2O14732 288 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 HS3ST1O14792 307 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 TXNDC12O95881 172 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 RENP00797 406 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 HLA-HP01893 362 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 IGFBP1P08833 259 aaPredicted RBP15.51■□□□□ 0.07
CLN3-247ENST00000636351 OR8G3PP0DMU2 310 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 POU1F1P28069 291 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 CDAP32320 146 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 GUCA1AP43080 201 aaPredicted RBP15.51■□□□□ 0.07
CLN3-247ENST00000636351 COX10Q12887 443 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 NPRL3Q12980 569 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 SLC35F1Q5T1Q4 408 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 NCMAPQ5T1S8 102 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 C1QTNF12Q5T7M4 302 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 ADAM5Q6NVV9 412 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 LEG1Q6P5S2 330 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 SLC25A47Q6Q0C1 308 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 PTCHD4Q6ZW05 846 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 HIPK1Q86Z02 1210 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 CCDC36Q8IYA8 594 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 PIAS4Q8N2W9 510 aaPredicted RBP15.51■□□□□ 0.07
CLN3-247ENST00000636351 SLC22A24Q8N4F4 322 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 ZNF611Q8N823 705 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 ICA1LQ8NDH6 482 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 OR4K13Q8NH42 304 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 NMD3Q96D46 503 aaKnown RBP15.51■□□□□ 0.07
CLN3-247ENST00000636351 NRBF2Q96F24 287 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 KCNS3Q9BQ31 491 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 SYT4Q9H2B2 425 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 SEMA6AQ9H2E6 1030 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 SEC61A2Q9H9S3 476 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 NTN4Q9HB63 628 aa15.51■□□□□ 0.07
CLN3-247ENST00000636351 MOV10Q9HCE1 1003 aaKnown RBP15.51■□□□□ 0.07
CLN3-247ENST00000636351 DPRXA6NFQ7 191 aa15.5■□□□□ 0.07
CLN3-247ENST00000636351 ERICH4A6NGS2 130 aa15.5■□□□□ 0.07
CLN3-247ENST00000636351 G3V2T6 193 aa15.5■□□□□ 0.07
CLN3-247ENST00000636351 ARPC3O15145 178 aa15.5■□□□□ 0.07
CLN3-247ENST00000636351 IDH3BO43837 385 aa15.5■□□□□ 0.07
CLN3-247ENST00000636351 AHCYL1O43865 530 aa15.5■□□□□ 0.07
CLN3-247ENST00000636351 HIST1H1CP16403 213 aaKnown RBP15.5■□□□□ 0.07
CLN3-247ENST00000636351 ZNF133P52736 654 aaPredicted RBP15.5■□□□□ 0.07
CLN3-247ENST00000636351 SGCAQ16586 387 aa15.5■□□□□ 0.07
CLN3-247ENST00000636351 SLC36A3Q495N2 470 aa15.5■□□□□ 0.07
CLN3-247ENST00000636351 CD300LDQ6UXZ3 194 aa15.5■□□□□ 0.07
CLN3-247ENST00000636351 ZNF627Q7L945 461 aa15.5■□□□□ 0.07
CLN3-247ENST00000636351 SLC16A14Q7RTX9 510 aa15.5■□□□□ 0.07
CLN3-247ENST00000636351 MDP1Q86V88 176 aa15.5■□□□□ 0.07
CLN3-247ENST00000636351 ZDHHC13Q8IUH4 622 aa15.5■□□□□ 0.07
CLN3-247ENST00000636351 SDR9C7Q8NEX9 313 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms