RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 CLN3Q13286 438 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 RNF151Q2KHN1 245 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 LYRM7Q5U5X0 104 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 LCN8Q6JVE9 175 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 MAMDC4Q6UXC1 1216 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 HIST2H3AQ71DI3 136 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 MED25Q71SY5 747 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 MRPL10Q7Z7H8 261 aaKnown RBP5.12□□□□□ -1.59
SCN1A-209ENST00000635750 C1QTNF6Q9BXI9 259 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 SHPKQ9UHJ6 478 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 ZNF835Q9Y2P0 537 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 SCN3AQ9NY46 2000 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 TRGV10A0A0A0MS01 117 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 C5orf49A4QMS7 147 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 SDHDO14521 159 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 LY86O95711 162 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 ANKRD34CP0C6C1 535 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 RPA2P15927 270 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 CD27P26842 260 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 ADPRHP54922 357 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 RGS7BPQ6MZT1 257 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-209ENST00000635750 HSD11B1LQ7Z5J1 315 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 LGI3Q8N145 548 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 MUC15Q8N387 334 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 POM121L2Q96KW2 1035 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 WDR61Q9GZS3 305 aaKnown RBP5.12□□□□□ -1.59
SCN1A-209ENST00000635750 MED9Q9NWA0 146 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 LOC102723971A0A1B0GUV8 181 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 NDUFB3O43676 98 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 FAM78AQ5JUQ0 283 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 OR10K2Q6IF99 312 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 DPY19L2P2Q6ZN68 376 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 RPS19BP1Q86WX3 136 aaKnown RBP5.12□□□□□ -1.59
SCN1A-209ENST00000635750 OR2L13Q8N349 312 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 RNF141Q8WVD5 230 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 TRMT61AQ96FX7 289 aaKnown RBP5.12□□□□□ -1.59
SCN1A-209ENST00000635750 SIGLEC10Q96LC7 697 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 ACTR3CQ9C0K3 210 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-209ENST00000635750 SRRQ9GZT4 340 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 CTDSP1Q9GZU7 261 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 OR51I2Q9H344 312 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 FBXO34Q9NWN3 711 aa5.12□□□□□ -1.59
SCN1A-209ENST00000635750 PHRF1Q9P1Y6 1649 aaKnown RBP5.11□□□□□ -1.59
SCN1A-209ENST00000635750 NID2Q14112 1375 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 RGPD8O14715 1765 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-209ENST00000635750 IGKV6D-41A0A0C4DH26 115 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 FAM72CH0Y354 149 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 FRS3O43559 492 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 HCRTR1O43613 425 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 UPK1BO75841 260 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 TNFRSF1AP19438 455 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 EPHA2P29317 976 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 TNFSF8P32971 234 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 NPY4RP50391 375 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 PRDX1Q06830 199 aaKnown RBP5.11□□□□□ -1.59
SCN1A-209ENST00000635750 HYAL4Q2M3T9 481 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 SMIM21Q3B7S5 101 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 FAM72AQ5TYM5 149 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 FAM72DQ6L9T8 149 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 H1FNTQ75WM6 255 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-209ENST00000635750 SLC35D2Q76EJ3 337 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 SLC36A1Q7Z2H8 476 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 FAM72BQ86X60 149 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 OR51A4Q8NGJ6 313 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 OR5D18Q8NGL1 313 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 OR6K3Q8NGY3 331 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 OR5R1Q8NH85 324 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 CIB3Q96Q77 187 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-209ENST00000635750 OR2A14Q96R47 310 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 CRLF2Q9HC73 371 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 MED17Q9NVC6 651 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 MARCH4Q9P2E8 410 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-209ENST00000635750 NPTNQ9Y639 398 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 MEIKINA0A087WXM9 373 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 FAM183AA6NL82 134 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 RAB7AP51149 207 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 ELLP55199 621 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-209ENST00000635750 HFEQ30201 348 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 ZDHHC24Q6UX98 284 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 PARS2Q7L3T8 475 aaKnown RBP5.11□□□□□ -1.59
SCN1A-209ENST00000635750 KHSRPQ92945 711 aaKnown RBP eCLIP5.11□□□□□ -1.592e-6■■■□□ 17.2
SCN1A-209ENST00000635750 NOL4LQ96MY1 436 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-209ENST00000635750 ZNF300Q96RE9 604 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-209ENST00000635750 HDAC8Q9BY41 377 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 WRAP73Q9P2S5 460 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-209ENST00000635750 TIMM10BQ9Y5J6 103 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 NWD2Q9ULI1 1742 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 OTOFQ9HC10 1997 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 LOC100289279A0A1B0GTE1 492 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 GABRA5P31644 462 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 HLCSP50747 726 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 MAP2K6P52564 334 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 ZNF140P52738 457 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-209ENST00000635750 CSNK1G2P78368 415 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 ETFRF1Q6IPR1 90 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 TDHQ8IZJ6 230 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 DEFB108BQ8NET1 73 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 GPR150Q8NGU9 434 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 DYNLRB2Q8TF09 96 aa5.11□□□□□ -1.59
SCN1A-209ENST00000635750 EDARADDQ8WWZ3 215 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms