RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 TMEM176BQ3YBM2 270 aaPredicted RBP12.94□□□□□ -0.34
VRK3-217ENST00000599538 CORO6Q6QEF8 472 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 PPP1R32Q7Z5V6 425 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 AKAP14Q86UN6 197 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 RPS19BP1Q86WX3 136 aaKnown RBP12.94□□□□□ -0.34
VRK3-217ENST00000599538 RAB43Q86YS6 212 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 PHYHIPQ92561 330 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 ABRACLQ9P1F3 81 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 GTF2A1LQ9UNN4 478 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 B3GALT5Q9Y2C3 310 aa12.94□□□□□ -0.34
VRK3-217ENST00000599538 MRPS7Q9Y2R9 242 aaKnown RBP12.94□□□□□ -0.34
VRK3-217ENST00000599538 PHF3Q92576 2039 aaKnown RBP12.94□□□□□ -0.34
VRK3-217ENST00000599538 MEIOCA2RUB1 952 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 H0YC42 278 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 EEF1E1O43324 174 aaKnown RBP12.93□□□□□ -0.34
VRK3-217ENST00000599538 LYRM1O43325 122 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 CD59P13987 128 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 SRP9P49458 86 aaKnown RBP12.93□□□□□ -0.34
VRK3-217ENST00000599538 DAP3P51398 398 aaKnown RBP12.93□□□□□ -0.34
VRK3-217ENST00000599538 PLA2G2CQ5R387 149 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 B3GNTL1Q67FW5 361 aaPredicted RBP12.93□□□□□ -0.34
VRK3-217ENST00000599538 ZNF57Q68EA5 555 aaPredicted RBP12.93□□□□□ -0.34
VRK3-217ENST00000599538 MTFR2Q6P444 385 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 OPN5Q6U736 354 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 NDUFAF7Q7L592 441 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 RAB11FIP2Q7L804 512 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 KRT77Q7Z794 578 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 GPAT4Q86UL3 456 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 PLCZ1Q86YW0 608 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 ZNF671Q8TAW3 534 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 SLC39A7Q92504 469 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 TMEM106AQ96A25 262 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 THAP7Q9BT49 309 aaPredicted RBP12.93□□□□□ -0.34
VRK3-217ENST00000599538 HDHD2Q9H0R4 259 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 NLKQ9UBE8 527 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 TCFL5Q9UL49 500 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 PADI1Q9ULC6 663 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 SPATA2Q9UM82 520 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 LRP12Q9Y561 859 aa12.93□□□□□ -0.34
VRK3-217ENST00000599538 PCDHGA9Q9Y5G4 932 aaKnown RBP12.93□□□□□ -0.34
VRK3-217ENST00000599538 A6NIZ1 184 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 PHYHO14832 338 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 ZNF254O75437 659 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 MAS1P04201 325 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 SSR4P51571 173 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 RAP1BP61224 184 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 RAP1AP62834 184 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 ROM1Q03395 351 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 ZNF528Q3MIS6 628 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 TEX30Q5JUR7 227 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 ASPHD2Q6ICH7 369 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 PRSS45Q7RTY3 260 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 LRRTM1Q86UE6 522 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 CMTM4Q8IZR5 234 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 HAVCR2Q8TDQ0 301 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 RNF128Q8TEB7 428 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 CT55Q8WUE5 264 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 JSRP1Q96MG2 331 aaPredicted RBP12.92□□□□□ -0.34
VRK3-217ENST00000599538 NKX3-1Q99801 234 aaPredicted RBP12.92□□□□□ -0.34
VRK3-217ENST00000599538 SH2D2AQ9NP31 389 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 FANCFQ9NPI8 374 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 RBFOX1Q9NWB1 397 aaKnown RBP12.92□□□□□ -0.34
VRK3-217ENST00000599538 V9GY05 133 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 TRBV5-7A0A0A0MS05 114 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 A0A1W2PNV4 684 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 TMEM212A6NML5 194 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 AIPO00170 330 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 DPP4P27487 766 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 MAP2K6P52564 334 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 AGFG1P52594 562 aaKnown RBP12.92□□□□□ -0.34
VRK3-217ENST00000599538 MLF1P58340 268 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 MFAP5Q13361 173 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 CAMK2DQ13557 499 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 UTS2BQ765I0 119 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 FCRLAQ7L513 359 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 DCXRQ7Z4W1 244 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 SERPINA12Q8IW75 414 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 TMEM156Q8N614 296 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 OR52N5Q8NH56 324 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 ENKURQ8TC29 256 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 ST7LQ8TDW4 575 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 PAQR8Q8TEZ7 354 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 ASB17Q8WXJ9 295 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 GCDHQ92947 438 aaPredicted RBP12.92□□□□□ -0.34
VRK3-217ENST00000599538 ITPKCQ96DU7 683 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 SLC25A38Q96DW6 304 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 ZFP3Q96NJ6 502 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 ANGPTL4Q9BY76 406 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 MRPL13Q9BYD1 178 aaKnown RBP12.92□□□□□ -0.34
VRK3-217ENST00000599538 COMMD4Q9H0A8 199 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 PTGES2Q9H7Z7 377 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 LIN7BQ9HAP6 207 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 TCF7L1Q9HCS4 588 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 DOCK10Q96BY6 2186 aa12.92□□□□□ -0.34
VRK3-217ENST00000599538 NPIPB13A6NJU9 1138 aa12.91□□□□□ -0.34
VRK3-217ENST00000599538 A8MV72 311 aaPredicted RBP12.91□□□□□ -0.34
VRK3-217ENST00000599538 C9orf172C9J069 976 aa12.91□□□□□ -0.34
VRK3-217ENST00000599538 NPIPB4C9JG80 1138 aa12.91□□□□□ -0.34
VRK3-217ENST00000599538 TRAF3IP2O43734 574 aaPredicted RBP12.91□□□□□ -0.34
VRK3-217ENST00000599538 CD3GP09693 182 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms