RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	ZSCAN4	Q8NAM6	433 aa	Predicted RBP	4.07	□□□□□ -1.76
SS18-223	ENST00000583595	TFB1M	Q8WVM0	346 aa	Known RBP	4.07	□□□□□ -1.76
SS18-223	ENST00000583595	DEDD2	Q8WXF8	326 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	ELMO1	Q92556	727 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	4.07	□□□□□ -1.76
SS18-223	ENST00000583595	ISG20	Q96AZ6	181 aa	Known RBP	4.07	□□□□□ -1.76
SS18-223	ENST00000583595	PPWD1	Q96BP3	646 aa	Known RBP	4.07	□□□□□ -1.76
SS18-223	ENST00000583595	ZHX1-C8orf76	Q96EF9	292 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	MOCOS	Q96EN8	888 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	SGTB	Q96EQ0	304 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	SDSL	Q96GA7	329 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	MSANTD3	Q96H12	275 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	C9orf72	Q96LT7	481 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	QKI	Q96PU8	341 aa	Known RBP eCLIP	4.07	□□□□□ -1.76
SS18-223	ENST00000583595	KCTD14	Q9BQ13	255 aa	Predicted RBP	4.07	□□□□□ -1.76
SS18-223	ENST00000583595	FEM1A	Q9BSK4	669 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	BCL2L14	Q9BZR8	327 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	RACGAP1	Q9H0H5	632 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	DSN1	Q9H410	356 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	SAV1	Q9H4B6	383 aa	Predicted RBP	4.07	□□□□□ -1.76
SS18-223	ENST00000583595	GLIPR2	Q9H4G4	154 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	AUNIP	Q9H7T9	357 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	MTHFD2L	Q9H903	347 aa	Predicted RBP	4.07	□□□□□ -1.76
SS18-223	ENST00000583595	LY9	Q9HBG7	655 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	ABCB10	Q9NRK6	738 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	PLSCR3	Q9NRY6	295 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	CYTH4	Q9UIA0	394 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	PPP1R3C	Q9UQK1	317 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	EXOG	Q9Y2C4	368 aa	Known RBP	4.07	□□□□□ -1.76
SS18-223	ENST00000583595	HSPE1-MOB4	S4R3N1	261 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	ZNFX1	Q9P2E3	1918 aa	Known RBP	4.07	□□□□□ -1.76
SS18-223	ENST00000583595	ATAD5	Q96QE3	1844 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	KIF13B	Q9NQT8	1826 aa		4.07	□□□□□ -1.76
SS18-223	ENST00000583595	RGPD8	O14715	1765 aa	Predicted RBP	4.07	□□□□□ -1.76
SS18-223	ENST00000583595	TOPAZ1	Q8N9V7	1692 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	COL5A2	P05997	1499 aa	Predicted RBP	4.06	□□□□□ -1.76
SS18-223	ENST00000583595	ZNF840P	A6NDX5	716 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	C15orf61	A6NNL5	157 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595		C9JVG2	144 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595		G3V2L1	256 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	TAPBP	O15533	448 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	RS1	O15537	224 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	PSTPIP1	O43586	416 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	CEACAM4	O75871	244 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	SLC22A5	O76082	557 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	DIRAS1	O95057	198 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	GABARAP	O95166	117 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	LYPLA2	O95372	231 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	OTC	P00480	354 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	C1QB	P02746	253 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	IFNA4	P05014	189 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	H2BFM	P0C1H6	154 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	OR9G9	P0C7N8	305 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	TRIM49	P0CI25	452 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	TRIM49C	P0CI26	452 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	TNNI1	P19237	187 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	ZP3	P21754	424 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	ATP5A1	P25705	553 aa	Known RBP	4.06	□□□□□ -1.76
SS18-223	ENST00000583595	CALML3	P27482	149 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	CD1C	P29017	333 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	FCGR2C	P31995	323 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	BMI1	P35226	326 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	RPL13A	P40429	203 aa	Known RBP	4.06	□□□□□ -1.76
SS18-223	ENST00000583595	GYG1	P46976	350 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	EMD	P50402	254 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	RAB4B	P61018	213 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	PSMC5	P62195	406 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	YWHAE	P62258	255 aa	Known RBP	4.06	□□□□□ -1.76
SS18-223	ENST00000583595	FKBP3	Q00688	224 aa	Known RBP	4.06	□□□□□ -1.76
SS18-223	ENST00000583595	PRKCD	Q05655	676 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	AQP6	Q13520	282 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	CRMP1	Q14194	572 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	NCF4	Q15080	339 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	ANGPT1	Q15389	498 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	UBE2S	Q16763	222 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	IZUMO4	Q1ZYL8	232 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	HSD17B12	Q53GQ0	312 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595		Q5BKY6	102 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	PIGG	Q5H8A4	983 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	FAM120AOS	Q5T036	256 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	PDPK2P	Q6A1A2	396 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	NADSYN1	Q6IA69	706 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	SLC35E4	Q6ICL7	350 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	C5orf46	Q6UWT4	87 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	TFAP2E	Q6VUC0	442 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	GDPD4	Q6W3E5	623 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595		Q6ZRP5	223 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	UTS2B	Q765I0	119 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	GDPD3	Q7L5L3	318 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	H2BFWT	Q7Z2G1	175 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	COMMD7	Q86VX2	200 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	ERO1B	Q86YB8	467 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	PGAM4	Q8N0Y7	254 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	METTL4	Q8N3J2	472 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	KIR3DL3	Q8N743	410 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	DNAAF3	Q8N9W5	541 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	SUMF1	Q8NBK3	374 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	OR4M2	Q8NGB6	313 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	OR10A7	Q8NGE5	316 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	OR52B6	Q8NGF0	335 aa		4.06	□□□□□ -1.76

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