RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 OR10H5Q8NGA6 315 aa20.63■□□□□ 0.89
SHMT1-206ENST00000579558 GRHPRQ9UBQ7 328 aa20.63■□□□□ 0.89
SHMT1-206ENST00000579558 FBXO9Q9UK97 447 aaPredicted RBP20.63■□□□□ 0.89
SHMT1-206ENST00000579558 AURKCQ9UQB9 309 aa20.63■□□□□ 0.89
SHMT1-206ENST00000579558 ADAM18Q9Y3Q7 739 aa20.63■□□□□ 0.89
SHMT1-206ENST00000579558 GPRIN2O60269 458 aa20.62■□□□□ 0.89
SHMT1-206ENST00000579558 GADD45GO95257 159 aa20.62■□□□□ 0.89
SHMT1-206ENST00000579558 F12P00748 615 aaPredicted RBP20.62■□□□□ 0.89
SHMT1-206ENST00000579558 FABP3P05413 133 aa20.62■□□□□ 0.89
SHMT1-206ENST00000579558 PPOXP50336 477 aa20.62■□□□□ 0.89
SHMT1-206ENST00000579558 PLP2Q04941 152 aa20.62■□□□□ 0.89
SHMT1-206ENST00000579558 SGCAQ16586 387 aa20.62■□□□□ 0.89
SHMT1-206ENST00000579558 FAM168AQ92567 244 aa20.62■□□□□ 0.89
SHMT1-206ENST00000579558 NABP1Q96AH0 204 aa20.62■□□□□ 0.89
SHMT1-206ENST00000579558 RSRC1Q96IZ7 334 aaKnown RBP20.62■□□□□ 0.89
SHMT1-206ENST00000579558 FUZQ9BT04 418 aa20.62■□□□□ 0.89
SHMT1-206ENST00000579558 C1orf198Q9H425 327 aa20.62■□□□□ 0.89
SHMT1-206ENST00000579558 CCNB1IP1Q9NPC3 277 aa20.62■□□□□ 0.89
SHMT1-206ENST00000579558 SLC7A8Q9UHI5 535 aa20.62■□□□□ 0.89
SHMT1-206ENST00000579558 SIGLEC7Q9Y286 467 aa20.62■□□□□ 0.89
SHMT1-206ENST00000579558 CR1P17927 2039 aa20.61■□□□□ 0.89
SHMT1-206ENST00000579558 IQCMA0A1B0GVH7 501 aa20.61■□□□□ 0.89
SHMT1-206ENST00000579558 SH3PXD2BA1X283 911 aa20.61■□□□□ 0.89
SHMT1-206ENST00000579558 H7C1C5 153 aa20.61■□□□□ 0.89
SHMT1-206ENST00000579558 NDUFB2O95178 105 aa20.61■□□□□ 0.89
SHMT1-206ENST00000579558 PTHP01270 115 aa20.61■□□□□ 0.89
SHMT1-206ENST00000579558 MMP7P09237 267 aaPredicted RBP20.61■□□□□ 0.89
SHMT1-206ENST00000579558 CSF3P09919 207 aa20.61■□□□□ 0.89
SHMT1-206ENST00000579558 CALB2P22676 271 aa20.61■□□□□ 0.89
SHMT1-206ENST00000579558 GLRXP35754 106 aa20.61■□□□□ 0.89
SHMT1-206ENST00000579558 RPS23P62266 143 aaKnown RBP20.61■□□□□ 0.89
SHMT1-206ENST00000579558 LCN6P62502 163 aa20.61■□□□□ 0.89
SHMT1-206ENST00000579558 Q96M85 177 aa20.61■□□□□ 0.89
SHMT1-206ENST00000579558 ZNF570Q96NI8 536 aa20.61■□□□□ 0.89
SHMT1-206ENST00000579558 DOK1Q99704 481 aa20.61■□□□□ 0.89
SHMT1-206ENST00000579558 CDH20Q9HBT6 801 aa20.61■□□□□ 0.89
SHMT1-206ENST00000579558 DYNLRB1Q9NP97 96 aa20.61■□□□□ 0.89
SHMT1-206ENST00000579558 TMEM129A0AVI4 362 aa20.6■□□□□ 0.89
SHMT1-206ENST00000579558 XKRYO14609 159 aa20.6■□□□□ 0.89
SHMT1-206ENST00000579558 PTP4A3O75365 173 aa20.6■□□□□ 0.89
SHMT1-206ENST00000579558 HOXB4P17483 251 aaPredicted RBP20.6■□□□□ 0.89
SHMT1-206ENST00000579558 HSF2Q03933 536 aa20.6■□□□□ 0.89
SHMT1-206ENST00000579558 TBC1D28Q2M2D7 210 aa20.6■□□□□ 0.89
SHMT1-206ENST00000579558 CYP2R1Q6VVX0 501 aa20.6■□□□□ 0.89
SHMT1-206ENST00000579558 ZDHHC21Q8IVQ6 265 aa20.6■□□□□ 0.89
SHMT1-206ENST00000579558 ARHGAP24Q8N264 748 aa20.6■□□□□ 0.89
SHMT1-206ENST00000579558 MRPL24Q96A35 216 aaKnown RBP20.6■□□□□ 0.89
SHMT1-206ENST00000579558 POM121Q96HA1 1249 aa20.6■□□□□ 0.89
SHMT1-206ENST00000579558 RAB1BQ9H0U4 201 aa20.6■□□□□ 0.89
SHMT1-206ENST00000579558 IL1RAPQ9NPH3 570 aa20.6■□□□□ 0.89
SHMT1-206ENST00000579558 ACTR3BQ9P1U1 418 aa20.6■□□□□ 0.89
SHMT1-206ENST00000579558 ZANQ9Y493 2812 aa20.6■□□□□ 0.89
SHMT1-206ENST00000579558 NAV3Q8IVL0 2385 aa20.59■□□□□ 0.89
SHMT1-206ENST00000579558 CSPG4Q6UVK1 2322 aa20.59■□□□□ 0.89
SHMT1-206ENST00000579558 A0A1W2PPL8 197 aa20.59■□□□□ 0.89
SHMT1-206ENST00000579558 UNC119BA6NIH7 251 aa20.59■□□□□ 0.89
SHMT1-206ENST00000579558 CCL2P13500 99 aa20.59■□□□□ 0.89
SHMT1-206ENST00000579558 ATP6V1B2P21281 511 aa20.59■□□□□ 0.89
SHMT1-206ENST00000579558 RRM2P31350 389 aa20.59■□□□□ 0.89
SHMT1-206ENST00000579558 GUCA1AP43080 201 aaPredicted RBP20.59■□□□□ 0.89
SHMT1-206ENST00000579558 MSMPQ1L6U9 139 aa20.59■□□□□ 0.89
SHMT1-206ENST00000579558 MESTQ5EB52 335 aa20.59■□□□□ 0.89
SHMT1-206ENST00000579558 RINLQ6ZS11 566 aa20.59■□□□□ 0.89
SHMT1-206ENST00000579558 FAM122BQ7Z309 247 aa20.59■□□□□ 0.89
SHMT1-206ENST00000579558 PAQR4Q8N4S7 273 aaPredicted RBP20.59■□□□□ 0.89
SHMT1-206ENST00000579558 OR1J2Q8NGS2 313 aa20.59■□□□□ 0.89
SHMT1-206ENST00000579558 C10orf105Q8TEF2 133 aa20.59■□□□□ 0.89
SHMT1-206ENST00000579558 MRPL37Q9BZE1 423 aaKnown RBP20.59■□□□□ 0.89
SHMT1-206ENST00000579558 FAM53CQ9NYF3 392 aa20.59■□□□□ 0.89
SHMT1-206ENST00000579558 IL20RAQ9UHF4 553 aa20.59■□□□□ 0.89
SHMT1-206ENST00000579558 ADAM21Q9UKJ8 722 aa20.59■□□□□ 0.89
SHMT1-206ENST00000579558 TEX13CA0A0J9YWL9 993 aa20.58■□□□□ 0.89
SHMT1-206ENST00000579558 SLC22A23A1A5C7 686 aa20.58■□□□□ 0.89
SHMT1-206ENST00000579558 ERCC1P07992 297 aaPredicted RBP20.58■□□□□ 0.89
SHMT1-206ENST00000579558 SLC25A16P16260 332 aa20.58■□□□□ 0.89
SHMT1-206ENST00000579558 ZNF32P17041 273 aa20.58■□□□□ 0.89
SHMT1-206ENST00000579558 APLNRP35414 380 aa20.58■□□□□ 0.89
SHMT1-206ENST00000579558 PDLIM4P50479 330 aa20.58■□□□□ 0.89
SHMT1-206ENST00000579558 KRR1Q13601 381 aaKnown RBP20.58■□□□□ 0.89
SHMT1-206ENST00000579558 PABPC1L2AQ5JQF8 200 aa20.58■□□□□ 0.89
SHMT1-206ENST00000579558 FAM27BQ5VT28 67 aa20.58■□□□□ 0.89
SHMT1-206ENST00000579558 THSD4Q6ZMP0 1018 aa20.58■□□□□ 0.89
SHMT1-206ENST00000579558 FOXL2NBQ6ZUU3 175 aa20.58■□□□□ 0.89
SHMT1-206ENST00000579558 RASD2Q96D21 266 aa20.58■□□□□ 0.89
SHMT1-206ENST00000579558 GPX7Q96SL4 187 aaPredicted RBP20.58■□□□□ 0.89
SHMT1-206ENST00000579558 GPA33Q99795 319 aa20.58■□□□□ 0.89
SHMT1-206ENST00000579558 SYT3Q9BQG1 590 aa20.58■□□□□ 0.89
SHMT1-206ENST00000579558 LRMDAQ9H2I8 198 aa20.58■□□□□ 0.89
SHMT1-206ENST00000579558 TLN2Q9Y4G6 2542 aa20.57■□□□□ 0.88
SHMT1-206ENST00000579558 FAM157BP0CG42 384 aa20.57■□□□□ 0.88
SHMT1-206ENST00000579558 T-ENOLP0DO92 83 aa20.57■□□□□ 0.88
SHMT1-206ENST00000579558 APEX1P27695 318 aaKnown RBP20.57■□□□□ 0.88
SHMT1-206ENST00000579558 LAP3P28838 519 aa20.57■□□□□ 0.88
SHMT1-206ENST00000579558 SDHAP31040 664 aa20.57■□□□□ 0.88
SHMT1-206ENST00000579558 EVX1P49640 407 aa20.57■□□□□ 0.88
SHMT1-206ENST00000579558 KRTAP1-1Q07627 177 aa20.57■□□□□ 0.88
SHMT1-206ENST00000579558 KRTAP21-3Q3LHN1 58 aa20.57■□□□□ 0.88
SHMT1-206ENST00000579558 MTX3Q5HYI7 312 aa20.57■□□□□ 0.88
SHMT1-206ENST00000579558 GPR139Q6DWJ6 353 aa20.57■□□□□ 0.88
SHMT1-206ENST00000579558 ZER1Q7Z7L7 766 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms