RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 VWA1Q6PCB0 445 aa14.23□□□□□ -0.13
SS18-211ENST00000578954 ZNF773Q6PK81 442 aa14.23□□□□□ -0.13
SS18-211ENST00000578954 LYPD4Q6UWN0 246 aa14.23□□□□□ -0.13
SS18-211ENST00000578954 ZNF627Q7L945 461 aa14.23□□□□□ -0.13
SS18-211ENST00000578954 PRSS48Q7RTY5 328 aa14.23□□□□□ -0.13
SS18-211ENST00000578954 ZNF100Q8IYN0 542 aa14.23□□□□□ -0.13
SS18-211ENST00000578954 ZNF511Q8NB15 262 aa14.23□□□□□ -0.13
SS18-211ENST00000578954 OR51G2Q8NGK0 314 aa14.23□□□□□ -0.13
SS18-211ENST00000578954 NSMAFQ92636 917 aa14.23□□□□□ -0.13
SS18-211ENST00000578954 MYDGFQ969H8 173 aa14.23□□□□□ -0.13
SS18-211ENST00000578954 CNN2Q99439 309 aaKnown RBP14.23□□□□□ -0.13
SS18-211ENST00000578954 CRLF2Q9HC73 371 aa14.23□□□□□ -0.13
SS18-211ENST00000578954 PLSCR4Q9NRQ2 329 aa14.23□□□□□ -0.13
SS18-211ENST00000578954 PCDHGB1Q9Y5G3 927 aa14.23□□□□□ -0.13
SS18-211ENST00000578954 COMMD3-BMI1R4GMX3 469 aa14.23□□□□□ -0.13
SS18-211ENST00000578954 INTS1Q8N201 2190 aaKnown RBP14.23□□□□□ -0.13
SS18-211ENST00000578954 PTGES3LE9PB15 166 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 RGS10O43665 173 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 RAB36O95755 333 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 TFP02787 698 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 RPSAP08865 295 aaKnown RBP14.22□□□□□ -0.13
SS18-211ENST00000578954 SMIM18P0DKX4 95 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 CD8BP10966 210 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 CTSSP25774 331 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 ZNF84P51523 738 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 CASP6P55212 293 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 SIRPAP78324 504 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 MRPS34P82930 218 aaKnown RBP14.22□□□□□ -0.13
SS18-211ENST00000578954 ROR2Q01974 943 aaKnown RBP14.22□□□□□ -0.13
SS18-211ENST00000578954 IRF3Q14653 427 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 TMEM211Q6ICI0 200 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 C3P1Q6ZMU1 363 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 SLC16A9Q7RTY1 509 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.22□□□□□ -0.13
SS18-211ENST00000578954 ABHD12BQ7Z5M8 362 aaPredicted RBP14.22□□□□□ -0.13
SS18-211ENST00000578954 OR4F15Q8NGB8 312 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 NABP1Q96AH0 204 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 STARD4Q96DR4 205 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 ZNF837Q96EG3 531 aaPredicted RBP14.22□□□□□ -0.13
SS18-211ENST00000578954 TMEM80Q96HE8 168 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 INTS14Q96SY0 518 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 MNTQ99583 582 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 ZNF649Q9BS31 505 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 CDCA4Q9BXL8 241 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 RERGLQ9H628 205 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 C12orf49Q9H741 205 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 POLE4Q9NR33 117 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 INPP5EQ9NRR6 644 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 ERVK-18Q9QC07 812 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 PRSS50Q9UI38 385 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 KCNG2Q9UJ96 466 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 MEMO1Q9Y316 297 aa14.22□□□□□ -0.13
SS18-211ENST00000578954 TVP23AA6NH52 213 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 HSPB2A8KAH6 182 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 ZNF587BE7ETH6 402 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 SELENOFO60613 162 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 GPANK1O95872 356 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 C21orf33P30042 268 aaPredicted RBP14.21□□□□□ -0.13
SS18-211ENST00000578954 CDH15P55291 814 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 ACTC1P68032 377 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 ACTA1P68133 377 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 TUBA4AP68366 448 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 MVKQ03426 396 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 HSPB2Q16082 182 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 CEACAM16Q2WEN9 425 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 BTLAQ7Z6A9 289 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 STX19Q8N4C7 294 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 CNEP1R1Q8N9A8 125 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 GALNT11Q8NCW6 608 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 TSPAN14Q8NG11 270 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 C11orf40Q8WZ69 217 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 YIPF3Q9GZM5 350 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 NELFAQ9H3P2 528 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 TMEM38BQ9NVV0 291 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 ZFYVE26Q68DK2 2539 aa14.21□□□□□ -0.13
SS18-211ENST00000578954 A0A087WXM4 84 aa14.2□□□□□ -0.14
SS18-211ENST00000578954 TRGV8A0A0C4DH27 118 aa14.2□□□□□ -0.14
SS18-211ENST00000578954 A0A0G2JNJ9 132 aa14.2□□□□□ -0.14
SS18-211ENST00000578954 A0A1W2PPL8 197 aa14.2□□□□□ -0.14
SS18-211ENST00000578954 ZNF99A8MXY4 864 aaPredicted RBP14.2□□□□□ -0.14
SS18-211ENST00000578954 APOL3O95236 402 aa14.2□□□□□ -0.14
SS18-211ENST00000578954 IGHV3-9P01782 118 aa14.2□□□□□ -0.14
SS18-211ENST00000578954 MT-ND2P03891 347 aa14.2□□□□□ -0.14
SS18-211ENST00000578954 SCG5P05408 212 aa14.2□□□□□ -0.14
SS18-211ENST00000578954 MRPL3P09001 348 aaKnown RBP14.2□□□□□ -0.14
SS18-211ENST00000578954 OR2T7P0C7T2 308 aa14.2□□□□□ -0.14
SS18-211ENST00000578954 NPR2P20594 1047 aa14.2□□□□□ -0.14
SS18-211ENST00000578954 MSR1P21757 451 aa14.2□□□□□ -0.14
SS18-211ENST00000578954 EEF1B2P24534 225 aaKnown RBP14.2□□□□□ -0.14
SS18-211ENST00000578954 NAA10P41227 235 aaPredicted RBP14.2□□□□□ -0.14
SS18-211ENST00000578954 ENTPD1P49961 510 aa14.2□□□□□ -0.14
SS18-211ENST00000578954 SH3BGRP55822 239 aaPredicted RBP14.2□□□□□ -0.14
SS18-211ENST00000578954 LSM6P62312 80 aaKnown RBP14.2□□□□□ -0.14
SS18-211ENST00000578954 PIGFQ07326 219 aa14.2□□□□□ -0.14
SS18-211ENST00000578954 PMPCAQ10713 525 aa14.2□□□□□ -0.14
SS18-211ENST00000578954 Q6ZT83 130 aa14.2□□□□□ -0.14
SS18-211ENST00000578954 SHFQ7M4L6 423 aa14.2□□□□□ -0.14
SS18-211ENST00000578954 CDC20BQ86Y33 519 aa14.2□□□□□ -0.14
SS18-211ENST00000578954 ERI1Q8IV48 349 aaKnown RBP14.2□□□□□ -0.14
SS18-211ENST00000578954 SLC35F2Q8IXU6 374 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms