RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 KLK11Q9UBX7 282 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 CDV3Q9UKY7 258 aaKnown RBP9.07□□□□□ -0.96
VPS53-220ENST00000576149 ASXL3Q9C0F0 2248 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 MYO15AQ9UKN7 3530 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 FER1L5A0AVI2 2057 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 NAP1L6A6NFF2 107 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 K7ESF4 209 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 ZNF354AO60765 605 aaPredicted RBP9.07□□□□□ -0.96
VPS53-220ENST00000576149 ANXA3P12429 323 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 CXCL3P19876 107 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 CFPP27918 469 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 ETFDHQ16134 617 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 ODF4Q2M2E3 257 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 MAJINQ3KP22 176 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 TMEM255AQ5JRV8 349 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 C6orf183Q5T699 404 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 SFRP4Q6FHJ7 346 aaPredicted RBP9.07□□□□□ -0.96
VPS53-220ENST00000576149 SLC18B1Q6NT16 456 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 ANKRD37Q7Z713 158 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 C9orf62Q8N4C0 152 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 OR11G2Q8NGC1 345 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 THRSPQ92748 146 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 MESP1Q9BRJ9 268 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 STEAP1Q9UHE8 339 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 ING4Q9UNL4 249 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 HSPB11Q9Y547 144 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 ADAMTS20P59510 1910 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 RP1P56715 2156 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 UNC13CQ8NB66 2214 aa9.07□□□□□ -0.96
VPS53-220ENST00000576149 ANKRD20A5PA0PJZ0 165 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 ANKUB1A6NFN9 424 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 ACOT7O00154 380 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 SPARCP09486 303 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 PSMB1P20618 241 aaKnown RBP9.06□□□□□ -0.96
VPS53-220ENST00000576149 CXCL12P48061 93 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 FBXW4P57775 412 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 TAS2R20P59543 309 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 SNRPD2P62316 118 aaKnown RBP9.06□□□□□ -0.96
VPS53-220ENST00000576149 C17orf67Q0P5P2 114 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 ELFN2Q5R3F8 820 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 OR5M10Q6IEU7 315 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 DNM1P46Q6ZS02 220 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 CREB3L2Q70SY1 520 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 FGD2Q7Z6J4 655 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 ZNF227Q86WZ6 799 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 OR6S1Q8NH40 331 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 OR8K3Q8NH51 312 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 ST8SIA1Q92185 356 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 MS4A3Q96HJ5 214 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 RANBP3Q9H6Z4 567 aaPredicted RBP9.06□□□□□ -0.96
VPS53-220ENST00000576149 ZFP64Q9NPA5 681 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 EMC3Q9P0I2 261 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 SUSD2Q9UGT4 822 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 ZNF222Q9UK12 451 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 ATXN7L1Q9ULK2 861 aaPredicted RBP9.06□□□□□ -0.96
VPS53-220ENST00000576149 TP53BP1Q12888 1972 aaPredicted RBP9.06□□□□□ -0.96
VPS53-220ENST00000576149 ANKRD34BA5PLL1 514 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 C2orf72A6NCS6 295 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 H3BSH0 61 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 KHDRBS3O75525 346 aaKnown RBP9.06□□□□□ -0.96
VPS53-220ENST00000576149 GLSO94925 669 aaPredicted RBP9.06□□□□□ -0.96
VPS53-220ENST00000576149 PNPP00491 289 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 HEXBP07686 556 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 SULT1A3P0DMM9 295 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 SULT1A4P0DMN0 295 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 TMIGD3P0DMS9 266 aaPredicted RBP9.06□□□□□ -0.96
VPS53-220ENST00000576149 HLA-DOBP13765 273 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 SDHBP21912 280 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 CRABP1P29762 137 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 ARRB1P49407 418 aaPredicted RBP9.06□□□□□ -0.96
VPS53-220ENST00000576149 ADAM8P78325 824 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 GALK2Q01415 458 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 ACY1Q03154 408 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 ZP4Q12836 540 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 SQSTM1Q13501 440 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 MELKQ14680 651 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 ANGPT1Q15389 498 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 NKAIN1Q4KMZ8 207 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 OLFML2AQ68BL7 652 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 PTCRAQ6ISU1 281 aaPredicted RBP9.06□□□□□ -0.96
VPS53-220ENST00000576149 KCTD18Q6PI47 426 aaPredicted RBP9.06□□□□□ -0.96
VPS53-220ENST00000576149 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.06□□□□□ -0.96
VPS53-220ENST00000576149 BEST4Q8NFU0 473 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 NUBPLQ8TB37 319 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 TSEN15Q8WW01 171 aaKnown RBP9.06□□□□□ -0.96
VPS53-220ENST00000576149 NXPE2Q96DL1 559 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 NPAS1Q99742 590 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 ABHD6Q9BV23 337 aa9.06□□□□□ -0.96
VPS53-220ENST00000576149 PPIEQ9UNP9 301 aaKnown RBP9.06□□□□□ -0.96
VPS53-220ENST00000576149 PCNX3Q9H6A9 2034 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 TMEM265A0A087WTH1 108 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 CCDC85CA6NKD9 419 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 MS4A18H0YCH9 400 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 SOX1O00570 391 aaPredicted RBP9.05□□□□□ -0.96
VPS53-220ENST00000576149 XRCC3O43542 346 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 ALOX12BO75342 701 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 TIAF1O95411 115 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 SYPP08247 313 aa9.05□□□□□ -0.96
VPS53-220ENST00000576149 PTHLHP12272 177 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms